HIV sequence database

Protein Feature Accent

Purpose: To view 3D structures of HIV proteins and to map a desired sequence (e.g., short functional domain or epitope) directly onto the interactive graphic.

Usage: Choose a structure or upload a structure file in PDB format. Uploading a sequence is not required; any sequences provided will be aligned with the structure sequence and displayed. For details, see Protein Feature Accent Explanation.

Select a protein structure:
[switch to full structure list]

HIV SIV

OR

upload a PDB file:

You may provide an amino acid sequence alignment (or a single unaligned sequence) below:

Paste your sequence(s) here
[Sample Input]

or upload a sequence file:

last modified: Mon Jul 18 15:16 2016

Index of all tools	Genome Browser	PrimerDesign-M
Alignment Slicer	Heatmap	Protein Feature Accent
AnalyzeAlign	Hepitope	Quality Control
AnnotateTree	Highlighter	QuickAlign
Branchlength	HIV BLAST	Rainbow Tree
CATNAP	HIVAlign	Recombinant HIV-1 Drawing Tool
Codon Alignment	Hypermut	RIP
CombiNAber	jpHMM at GOBICS	SeqPublish
Consensus Maker	Mosaic Vaccine Tool Suite	Sequence Locator
ELF	Motif Scan	SNAP
ElimDupes	N-Glycosite	SUDI Subtyping
Entropy	PCOORD	SynchAlign
Epigraph	PepMap	Translate
FindModel	PeptGen	TreeMaker
Format Converter	PhyloPlace	TreeRate
Gap Strip/Squeeze	PhyML	Variable Region Characteristics
GenBank Entry Generation	Pixel	VESPA
Gene Cutter	Poisson-Fitter	External Tools

Select a protein structure: [switch to full structure list] HIV SIV
	OR
upload a PDB file:
You may provide an amino acid sequence alignment (or a single unaligned sequence) below:
Paste your sequence(s) here [Sample Input]
or upload a sequence file: