In-depth Annotation Resources
HXB2 Genome Annotation
- HXB2 (.xls), the reference sequence for HIV-1 (last updated: Mon Jul 11 13:14 2016)
An Excel spreadsheet with base-by-base detail of the genome/proteome landmarks. Includes the complete nucleotide genome of the reference sequence, showing all gene/protein boundaries. Many DNA, RNA, and protein features of interest are marked, including drug resistance mutations and important regulatory and structural regions.
- Feature Search Interface provides a searchable database of HXB2 (K03455) and Mac239 (M33262) start/stop coordinates. Contains approximately the same information as the spreadsheet above, but in a form that is searchable and useful for computer applications.
- Genomic Region List is a short list of coordinates for genes and regions, as used for the main sequence interface.
Mac239 (SIV) Genome Annotation
- Mac239 (.xls), the reference sequence for HIV-2 and SIV (last updated: Mon Jul 15 11:40 2013)
An Excel spreadsheet with base-by-base detail of the genome/proteome landmarks. Includes the complete nucleotide genome of the reference sequence, showing all gene/protein boundaries. Many DNA, RNA, and protein features of interest are marked.
- Feature Search Interface provides a searchable database of HXB2 (K03455) and Mac239 (M33262) start/stop coordinates. Contains approximately the same information as the spreadsheet above, but in a form that is searchable and useful for computer applications.
HIV-1 Env-Antibody Interactions
last modified: Tue Jul 12 09:17 2016