HIV sequence database

Alignment Slicer

Purpose: This tool cuts slices from an input alignment. See Help Page for details.

The sample input extracts the A, G, and ambiguous regions of CRF02_AG from an alignment of HIV-1.

last modified: Thu Nov 21 09:55 2013

Questions or comments? Contact us at seq-info@lanl.gov.

Index of all tools	Genome Browser	PrimerDesign-M
Alignment Slicer	Heatmap	Protein Feature Accent
AnalyzeAlign	Hepitope	Quality Control
AnnotateTree	Highlighter	QuickAlign
Branchlength	HIV BLAST	Rainbow Tree
CATNAP	HIVAlign	Recombinant HIV-1 Drawing Tool
Codon Alignment	Hypermut	RIP
CombiNAber	jpHMM at GOBICS	SeqPublish
Consensus Maker	Mosaic Vaccine Tool Suite	Sequence Locator
ELF	Motif Scan	SNAP
ElimDupes	N-Glycosite	SUDI Subtyping
Entropy	PCOORD	SynchAlign
Epigraph	PepMap	Translate
FindModel	PeptGen	TreeMaker
Format Converter	PhyloPlace	TreeRate
Gap Strip/Squeeze	PhyML	Variable Region Characteristics
GenBank Entry Generation	Pixel	VESPA
Gene Cutter	Poisson-Fitter	External Tools

Upload your alignment
Or enter your alignment here [Sample Input]
Upload text file of breakpoints
Or enter breakpoints here

Breakpoints refer to:	Residues of 1st sequence Alignment columns
Alignment starts at residue number
Gap characters