Denise Harrington: Joining the Longline Crew, September 17, 2016

 

NOAA Teacher at Sea

Denise Harrington

Aboard NOAA Ship Oregon II

September 16-30, 2016

Mission: Longline Survey

Geographic Area: Gulf of Mexico

Date: Saturday, September 17, 2016

Location: 29 2.113’ N  93o 24.5’ W

Weather from the Bridge: 28.9C (dry bulb), Wind 6 knots @ 250o, overcast, 2-3′ SE swell.

Science Log

The muggy afternoon air did not dampen my excitement as we left Galveston, Texas, aboard the National Oceanic and Atmospheric Administration (NOAA) Ship Oregon II.  I am a NOAA Teacher at Sea, participating in a  longline survey in the Gulf of Mexico, surveying sharks and bony fish.

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Fellow volunteers Leah Rucker and Evan Pettis and I bid farewell to Galveston. Evidence of human influence, such as development, oil rigs, barges, and ships, is not hard to spot. Photo: Matt Ellis, NOAA

When I tell people about the Teacher at Sea program, they assume I teach high school or college, not second grade in rural Tillamook, Oregon.  Yet spend a few moments with any seven or eight year old and you will find they demonstrate significant potential as scientists through their questions, observations, and predictions. Listen to them in action, documented by Oregon Public Broadcasting, at their annual Day at the Bay field trip.

Just as with language acquisition, exposing the young mind to the process of scientific inquiry ensures we will have a greater pool of scientists to manage our natural resources as we age.  By inviting elementary teachers to participate in the Teacher at Sea program, NOAA makes it clear that the earlier we get kids out in the field, the better.

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Each year, my students develop a science or engineering project based upon their interests.  Here, South Prairie Elementary students survey invertebrates along a line transect as part of a watershed program with partners at Sam Case Elementary School in Newport, Oregon.

The NOAA Teacher at Sea program will connect my students with scientists Dr. Trey Driggers, Paul Felts, Dr. Eric Hoffmayer, Adam Pollock, Kevin Rademacher, and Chrissy Stepongzi, as they catch sharks, snapper, and other fish that inhabit the Gulf of Mexico. The data they collect is part of the Red Snapper/Shark Bottom Longline Survey that began in 1995. The survey, broken into four legs or parts each year, provides life cycle and population information about many marine species over a greater geographic distance and longer period of time than any other study of its kind.

Leg IV is the last leg of the survey.  After a long season of data collection, scientists, sailors, and fishermen will be able to return to their families.

My twelve hour shift begins tomorrow, September 17, at noon, and will continue each day from noon until midnight until the most eastern station near Panama City, Florida, is surveyed.  Imagine working 12 hour shifts, daily, for two weeks straight!  The crew is working through the day and night, sleeping when they can, so shutting the heavy metal doors gently and refraining from talking in the passageways is essential.  I got lucky on the day shift:  my hours are closer to those of a teacher and the transition back to the classroom will be smoother than if I were on the night shift.

Approximately 200 stations, or geographic points, are surveyed in four legs. Assume we divide the stations equally among the legs, and the first three legs met their goal. Leg IV is twelve days in duration. How many stations do we need to survey each day (on average) to complete the data collection process?  This math problem might be a bit challenging for my second graders, but it is on my mind.

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Mulling over the enormity of our task, Skilled Fisherman Chuck Godwin and I discuss which 49 year old fisherman will end up with more wrinkles at the end of the survey. Currently, I am in the lead, but I bet he’s hiding some behind those shades. Photo: Mike Conway

I wonder what kind of sharks we will catch.  Looking back at the results of the 2015 cruise report, I learned that there was one big winner.  More than half of the sharks caught were Atlantic sharpnose (Rhizoprionodon terraenovae) sharks. Other significant populations of sharks were the blacktip (Carcharhinus limbatus) shark, the sandbar (Carcharhinus plumbeus) shark, and the blacknose (Carcharhinus acronotus) shark.

My fellow Teacher at Sea, Barney Peterson, participated in Leg II of the 2016 survey, and by reading her blog I learned that the shark they caught the most was the sandbar shark.

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In this sample data sheet from the end of Leg III, all but one of the sharks caught were the blacknose sharks.  Notice the condition of two of the fish caught: “heads only.”  Imagine what happened to them!

 

 

Personal Log

My first memory of a shark was when my brother, an avid lifetime fisherman, took several buses across the San Francisco Bay area to go fishing.  That afternoon, he came home on the bus with a huge shark he’d caught.  I was mesmerized. We were poor at the time and food was hard to come by, but mom or dad insisted sharks were not edible, and Greg was told to bury the shark in the yard.  Our dog, Pumpkin, would not comply, and dug that shark up for days after, the overpowering smell reminding us of our poor choice. I don’t have many regrets, but looking back on that day, I wish we had done something differently with the shark.

Since then, I’ve learned that shark is a popular source of protein in the diets of people around the world, and is growing in popularity in the United States.  In our survey area, Fisheries Biologist Eric Hoffmayer tells me that blacktip and sandbar sharks are the two most commercially important species. Our survey is a multispecies survey, with benefits beyond these two species and far beyond our imagination. As demand increases, so too does the need for careful management to keep fisheries sustainable. I am honored to be part of a crew working to ensure that we understand, value, and respect our one world ocean and the animals that inhabit it.

Barney Peterson: Who Works on NOAA Ship OREGON II? Part 3

NOAA Teacher a Sea

Barney Peterson

Aboard NOAA Ship Oregon II

August 13 – 28, 2016

Mission: Long Line Survey

Geographic Area: Gulf of Mexico

Date: Sunday, August 28, 2016

Weather Data is not available for this post because I am writing from the Biloxi/Gulfport Airport.

DECK CREW

Tim Martin, Chief Boatswain, aboard the OREGON II, left his home near the Missouri River in Missouri for a life at sea and has never looked back.  Like many young people from the Central United States, he joined the Navy as a way to travel and see the rest of the world.  He was stationed on Whidbey Island in Washington State and when he left the Navy he became a commercial fisherman working out of Seattle to fish the in Bering Sea from Dutch Harbor, Alaska.

Tim left the west coast and the world of commercial fishing to join NOAA and worked for several years on ships out of NOAA Woods Hole Station in Massachusetts.   Eventually, through connections he made on the job, he was able to transfer to the Southeastern Fisheries group.  He has worked on several ships, but has been on the OREGON II for 12 years.  Tim likes his job for the variety and activity it provides, as well as opportunities to apply his mind to ways to make things work better or more smoothly.  He attributes much of the good working atmosphere on the ship to the stability of many crew members who have worked together for years.   As a long-time civilian mariner with NOAA he appreciates the importance of believing in what you are doing and being committed to being successful.

But, Tim Martin is not so one dimensional that you can know him as just a mariner.  Talking with him I learned that he is a voracious reader with very eclectic tastes in literature.  He devours everything from travel accounts to true adventure, biographies, and historical accounts of exploration and settlement of the world.  He has traveled broadly and uses his reading time to continue to learn about the places he has visited.  He is a licensed diver and enjoys the underwater world as much as sailing on the surface of the sea.   I was fascinated to learn that he has dived to authentic pirate wrecks…quite a change from his underwater beginnings in the dark and brackish Pascagoula River.  Tim is a great example of someone who recognizes that his only limits are the ones he sets for himself.  That is a great legacy to leave for his family.

Chris Nichols, Lead Fisherman, got into marine work for the adventures.  Growing up he read classics like “Captains Courageous” and “20,000 Leagues Under the Sea.” His years as a Boy Scout helped empower him with a can-do attitude that kept him from quitting when things got difficult.  After a mediocre high school career and his childhood years in West Palm Beach, Florida, hanging around the docks and fishing, his quest for travel and adventure led him first to commercial fishing and then to join the Navy.

After six years in the service, including training in water rescue, Chris left the Navy and started classes for work in the merchant marine industry.  As he worked toward earning his 100 ton master rating he discovered that using math, which had seemed unimportant and boring in high school, was critical for navigation.  Applying the things he was studying to real world problems made learning important.  The life-style structure of his military years helped him move fairly seamlessly into the shift work that became his routine aboard merchant ships.  The travel fed his sense of exploration and adventure.

Now, after 20 years working either on NOAA ships or for companies that contracted with NOAA, Chris still loves his job and his life style.  His experience in the merchant marine gave him the background to understand working on ships from the viewpoint of the wheel house and the deck.  He patiently explained to me that the job titles of people working on the deck crew are just positions for which eligible Able Bodied Seamen were hired.  They are not classification by skill or experience; they are job descriptions.  Each survey watch requires 3 crew members on deck to work equipment and support the scientists in deployment and retrieval of lines. Cooperation and communication are the most critical skills needed by everyone on the ship for success in carrying out their mission.

“NOAA has recently been experiencing a lack of interested, qualified applicants,” Chris told me.  “I think many young people lack the sense of adventure that makes life at sea attractive.”  He certainly demonstrates that desire for adventure: his eyes light up and an infectious grin spreads across his face as he talks about the places he’s been and the places he still wants to go.

The whole deck crew, including Chris Rawley, Mike Conway, Chuck Godwin, and James Rhue, are a lively, hard-working bunch.  They do their jobs, they have some fun doing them sometimes, and they like what they are doing.  Every time I was around them I could hear John Fogarty’s song “Rambunctious Boy” playing in my head and I ended up smiling and humming along!

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The Deck Crew – Chris Nichols, Mike Conway, Tim Martin, James Rhue, and Chris Rawley

ENGINEERS

Thirty-six years ago Rich Brooks took the advice of his high school math and history teachers and enrolled at the Massachusetts Maritime Academy.  The strict structure of the Academy helped him develop his study habits and learn the discipline needed to raise from a low C student a B+ student who took pride in his work.  He graduated with a degree in Marine Engineering, but spent time as a substitute teacher while deciding where he wanted to go with his career.  Currently he holds 3 chief engineer licenses: steam, motor and gasoline and is qualified to operate any watercraft.

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Richard Brooks

Eventually he started working on ships, spending a number of years in the Merchant Marine.   He worked on merchant transport ships contracted to our government to support Operation Desert Storm and Operation Iraqi Freedom in the Persian Gulf. For 10 years he worked on independent oil tankers on the West Coast, transporting oil and gasoline to and from various ports. He has been a 1st Engineer for NOAA for 2 years.

Rich enjoys the travel and adventure that are part of his career.  He likes visiting different cities and has been through both the Suez and Panama Canals in his travels.  It has been a long journey around the world from his childhood home in Haverhill, Massachusetts to Mobile, Alabama where he made his home base for the last 25 years.  He is proud that his work as an engineer has influenced his son to pursue a career in engineering, following his father’s example of hard work and sacrifice as the way to get ahead in life. Rich hopes to see more young people turn to careers in engineering, knowing as he does that the average age of marine engineers in this country is 58 years which means there will be openings for young people as they complete their training.  As for him, when he retires several years in the future he looks forward to moving closer to his father in Florida, going fishing and playing golf.

 

THE PEOPLE I MISSED INTERVIEWING:

My roommate, Chrissy Stepongzi, is a marine biologist and the person of whom I saw the least on this cruise.  She knows her job and was always eager to answer questions.  We just did not see each other often to talk because of being on opposite shifts and sharing the room.  She slept while I worked and visa-versa.  I appreciated her quick smile and well-developed sense of humor and wish we had been able to get better acquainted.

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The Night Crew before a shift change – Trey, Chrissy, Lydia, and Toni

Fisherman Mike Conway has been working on ships for a long time.  He loves the ocean and loves the travel.  His willingness to make sure I learned and got opportunity to see things was really helpful and made me feel welcome.  Mike was always willing to grab my iPad and take pictures so I could be in them and he was the one that made sure I got to see the sky at night and appreciate the beauty of being on the ocean in one more way.

Fisherman Chris Rawley, quick to grin, but slow to talk, took some effort to get to know.  Chris was a fisherman on our shift and helped with everything from running the crane to pulling lines to wrestling sharks.  He was “born under a wandering star,” and loves to travel.  He’s a gypsy at heart.

James Rhue is another fisherman working on the deck crew.  He too was with the night shift so we didn’t cross paths often.  When we did talk he could always answer my questions and made me feel welcome.

Mike, Chris, and James are pictured in the Deck Crew photo above.

Mary Stratford was filling in on the deck crew this cruise.  She lives in Puerto Rico where she is a ceramic artist, but much of her life has been spent working in jobs that allow her to see the world.  Mary was helpful and friendly and always interesting to talk to.

2nd Engineer Darnell Doe, the quiet, friendly guy I ate breakfast with most mornings.  We shared a little conversation and watch the news over a quick bite to eat and a cup of coffee.  I never turned out into a formal interview and didn’t take notes on our casual conversations.

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2nd Engineer Darnell Doe

3rd Engineer Sam Bessey was filling in a temporary vacancy.  He is a recent graduate of an academy in Maine and worked the opposite shift of mine so we had a few chances to talk a little, but not enough to call an interview.  I do know he wants to head for Hawaii and try to find work there after this cruise, but will head home to Maine to see family first.  Good luck in your new career Sam.

Roy Tolliver was our tech person.  I most often saw him walking from place to place on the decks, checking on electronic equipment and trying to troubleshoot computer problems when they arose.  Roy has worked on ships for many years and has been many places around the world.

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Roy Tolliver and Sam Bessey on the flying bridge as we moved into the harbor at Gulfport

O C Hill, Listed on the staff roster as a “wiper” was another one of the people who kept the ship running.  Our interactions were limited to friendly smiles and greetings.  When folks work in the engine room it is hard to find a time to talk with them, especially if shifts don’t match.

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Otha (O.C.) Hill

Valerie McCaskill, our cook and one of the most important people on the ship.  I know she has a daughter she was eager to get home to see.  I know she had very little warning that the previous cook would not be on this voyage so she had to step in in a hurry.  I know that she has a beautiful smile and makes legendary macaroni and cheese!  She kept us very happy!

Chuck Godwin would normally be working on this ship as a skilled fisherman on the deck crew, but he worked in the kitchen with Valerie this trip to fill an important empty spot and keep us all well-fed.  His irrepressible sense of fun and lively conversation kept us all hopping.  His career has spanned time in the Coast Guard as well as years with NOAA.  His is a proud new grandpa.

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Valerie McCaskill and Chuck Godwin in the galley of NOAA Ship OREGON II

That I did not get to know everyone on the ship is my loss.  Everyone that I met was friendly and helpful.  It was a true pleasure to meet and work with these great people.

Lynn Kurth: Solstice at Sea!, June 8, 2016

NOAA Teacher at Sea

Lynn M. Kurth

Assigned to:  NOAA Ship Rainier

June 20th-July 1st, 2016

Personal Log: 

My name is Lynn Kurth and I teach at Prairie River Middle School located in Merrill, WI.  I am honored to have the opportunity to work aboard NOAA Ship Rainier as a Teacher at Sea during the summer solstice.  Over the past twenty years of my teaching career I have had some amazing experiences, such as scuba diving in beautiful coral reefs, working aboard research vessels on Lake Superior and the Atlantic, and whitewater canoeing rivers in the United States and abroad.  The one thing that all of these experiences have in common is water and because of this I have come to appreciate what a truly important natural resource water is.

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Me aboard the Oregon II for a Long Line Shark and Red Snapper Survey in 2014

Because my students are the next generation of caretakers of this important natural resource, I recognize how vital it is to bring water issues into the classroom:  Most recently I worked with my 7th and 8th grade middle school students to improve local water quality by installing a school rain garden.  During the project students learned about the importance of diverting rain water out of the storm sewer when possible and how to do it in an effective and attractive way.  Other projects included the restoration of our riverbank last year and using a Hydrolab to monitor the water quality of the Prairie River, which runs adjacent to our school.  So, sailing aboard NOAA Ship Rainier to learn more about hydrography (the science of surveying and charting bodies of water) seems like a most natural and logical way to move forward.

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Eighth grade science students jumping for joy during the fall testing of the Prairie River with the Hydrolab. Notice the fellow in waders holding the Hydrolab with great care!

I will be sailing aboard NOAA Ship Rainier from Homer, Alaska, on June 20th.  Until then I have a school year to wrap up, a new puppy to train, a project with Wisconsin Sea Grant to work on and packing to get done.  There are days I’m a bit nervous about getting everything done but when NOAA Ship Rainier casts off from the pier in Homer I will be 100 percent focused on gathering the knowledge and skills that will enhance my role as an educator of students who are part of the next generation charged with the stewardship of this planet.

IMG_1564Newest addition to our family: Paavo a Finnish Lapphund Photo Credit: Lynn Drumm, Yutori Finnish Lapphunds

 

Kathleen Gibson, Preparing to Leave for the Mississippi Coast, July 10, 2015

NOAA Teacher at Sea
Kathleen Gibson
Aboard NOAA Ship Oregon II
July 25 – August 8, 2015

Mission: Fisheries – Conduct longline surveys to monitor interannual variability of shark populations of the Atlantic coast and the Gulf of Mexico.
Geographical Area of Cruise: Gulf of Mexico and Atlantic Ocean off the Florida coast.
Date: July 10, 2015

Introduction

Town of Trumbull, Fairfield County , CT

Town of Trumbull, CT

My name is Kathleen Gibson and I bring you greetings from Trumbull, CT where live and teach. In two weeks I will travel to Pascagoula, MS, located on the Gulf of Mexico, to join NOAA Corps members, research scientists, and the crew aboard NOAA Ship Oregon II, as a  2015 NOAA Teacher at Sea.

I work at Trumbull High School and currently teach Biology to sophomores and two elective courses for seniors–Marine Science and AP Environmental Science.  I’m passionate about environmental education and am always looking for opportunities to engage students in the world outside of the classroom.  Trumbull has a large amount of protected green space, wetlands, streams and a river, and while we aren’t on the coast, we are only a few miles from Long Island Sound.  The woods and the shoreline have become our laboratory.

Pequonnock River, Trumbull, CT

Pequonnock River, Trumbull, CT

I’m open to adventures and new experiences that help me grow both personally and professionally.  I’m fortunate to have an awesome family, terrific colleagues and open-minded students who are willing to go along with my ideas; whether it be be hiking around volcanoes and rift zones, looking for puffins, or wading in nearby streams looking for life below.

About NOAA and Teacher at Sea

NOAA Ship Oregon II Photo Credit: NOAA.gov

NOAA Ship Oregon II
Photo Credit: NOAA.gov

The National Oceanic and Atmospheric Administration (NOAA) is an agency within the United States Department of Commerce that seeks to enrich life through science.  While NOAA is somewhat familiar to many of us– thanks to the abundance of weather data that is collected and disseminated to the public–that’s not all that is happening  there. NOAA is working to increase our understanding of climate, weather and marine ecosystems, and to use this knowledge to better manage and protect these crucial ecosystems.  In addition to the abundant educational resources available to all teachers, NOAA provides unique opportunities for teachers and students.  The Teacher at Sea Program  brings classroom teachers into the field to work with world-renowned NOAA scientists.

The Mission

The Mission of the cruise I will be a part of is to monitor Shark and Red Snapper populations in the Gulf of Mexico in the Atlantic Ocean off the Florida coast. Data collected will be compared to findings from previous years, as a part of the ongoing research studying inter-annual variability of these populations. We are scheduled to embark on July 25, 2015 and plan to sail from Pascagoula, MS, down the west coast of Florida and up the Atlantic Coast as far as Mayport, FL.

I am honored to have been selected to be a Teacher at Sea for the 2015 Season  and look forward to a number of “firsts”. I’ve never been to Mississippi nor have I been at sea for more than 24 hours. Also, I’ve only experienced sharks as preserved specimens or through aquarium glass.  I’m also looking forward to meeting my shipmates and learning about career opportunities and the paths that led them to be a part of this Oregon II cruise. I’ll share as much as I can through future posts. I’m excited to bring my students and others along with me on this journey.

Trumbull to Pascagoula.  Longline survey area is marked in blue.

Trumbull to Pascagoula. Longline survey area is marked in blue.

Next Up?

My next post to you should be coming later this month from off the Mississippi coast.  However, the first rule of being on board is FLEXIBILITY, so things may change.  Either way, I’ll keep you posted. In the meantime, please check out some of the TAS 2015 blogs written by my fellow NOAA Teachers at Sea, and spread the word. There is so much to learn.

Did You Know?

  • While some sharks release eggs into the water where they will later hatch, as many as 75% of shark species give birth to live young.
  • Shark babies are called pups.

David Walker: Florida, Speciation, and Learning All Over Again (Days 13-15), July 8, 2015

NOAA Teacher at Sea
David Walker
Aboard NOAA Ship Oregon II
June 24 – July 9, 2015

Mission: SEAMAP Bottomfish Survey
Geographical Area of Cruise: Gulf of Mexico
Date: July 8, 2015

Weather Data from the Bridge

Weather Log 7/7/15

NOAA Ship Oregon II Weather Log 7/7/15

The seas have remained incredibly calm, again with waves normally no higher than 1 ft.  July 7, 2015 was a beautiful day, with few (FEW, 1-2 oktas) clouds in the sky (see above weather log from the bridge).  Visibility from the bridge was 10 nautical miles (nm) throughout the day.

Science and Technology Log

After a run of around 16 hours, we finally arrived on the west coast of Florida to continue the survey.

Wow!  The organisms caught on the west coast of Florida were entirely different from those caught west of the Mississippi.  In our first trawl catch, I almost didn’t recognize a single species.

Fisheries biologist Kevin Rademacher shared with me an article, “Evidence of multiple vicariance in a marine suture-zone in the Gulf of Mexico” (Portnoy and Gold, 2012), that offers a potential explanation  for the many differences observed.  The paper is based on what are called “suture-zones.”  A suture-zone, as defined previously in the literature, is “a band of geographic overlap between major biotic assemblages, including pairs of species or semispecies which hybridize in the zone” (Remington, 1968).  In other words, it is a barrier zone of some kind, allowing for allopatric speciation, yet also containing overlap for species hybridization.  As noted by Hobbes, et al. (2009), such suture-zones are more difficult to detect in marine environments, and accordingly, have received less attention in the literature.  Such zones, however, have been discovered and described in the northern Gulf of Mexico, between Texas and Florida (Dahlberg, 1970; McClure and McEachran, 1992).

Portnoy and Gold note that “at least 15 pairs of fishes and invertebrates described as ‘sister taxa’ (species, subspecies, or genetically distinct populations) meet in this region, with evidence of hybridization occurring between several of the taxa” (Portnoy and Gold, 2012).  The below table delineates these sister taxa.  On this table, I have highlighted species that we have found on this survey.

Sister Taxa

Sister taxa found in the northern Gulf of Mexico. Highlighted are species we have encountered on this survey (Portnoy and Gold, 2012).

The figure below geographically illustrates distribution patterns of two pairs of sister species within the northern Gulf of Mexico.  We have seen all four of these species on this survey, and our observations have been consistent with these distribution patterns.

Distributions of sister taxa within the northern Gulf of Mexico

Distributions of “sister taxa” within the northern Gulf of Mexico (Portnoy and Gold, 2012)

Prior to Portnoy and Gold, hypothesized reasons for the suture-zone and allopatric speciation in the northern Gulf included “(1) a physical barrier, similar to the Florida peninsula, that arose c. 2.5 million years ago (Ma) during the Pliocene (Ginsburg, 1952), (2) an ecological barrier, perhaps a river that drained the Tennessee River basin directly into the Gulf, that existed approximately 2.4 Ma (Simpson, 1900; Ginsburg, 1952), (3) a strong current that flowed from the Gulf to the Atlantic through the Suwanee Straits approximately 1.75 Ma (Bert, 1986), and (4) extended cooling during early Pleistocene glaciations occurring c. 700–135 thousand years ago (ka) (Dahlberg, 1970)” (Portnoy and Gold, 2012).  Another explanation has been offered by Hewitt (1996), involving marine species being forced into different areas of refuge during the glacial events of the Pleistocene, allowing for allopatric speciation.  Following the retreat of the glaciers, according to this hypothesis, these species would have been allowed to come into contact again, allowing for hybridization.

Portnoy and Gold used mitochondrial and microsatellite DNA sequence data from Karlsson et al. (2009) to “determine if estimated divergence times in lane snapper were consistent with the timing of [the above] hypothesized variance events in the suture-zone area, in order to distinguish whether the Gulf suture-zone is characterized by a single or multiple vicariance event(s)” (Portnoy and Gold, 2012).

Their results suggest that the divergence of lane snapper in the northern Gulf occurred much more recently than the hypothesized events described by Ginsberg (1952), Bert (1970), and Dahlberg (1970).  These results also suggest that the explanation offered by Hewitt (1996) is an unlikely explanation for the divergence of lane snapper, for even though the time of multiple glaciations is consistent with the time of lane snapper divergence, water temperatures across the Gulf are estimated to have been within the thermal tolerance of lane snapper during these glaciations.  Evidence also suggests that a shallow shelf existed during these glaciations, representing a habitat in which lane snapper could have lived.

The explanation that Portnoy and Gold favor, in terms of explaining lane snapper divergence, is one suggested by Kennett and Shackleton (1975), as well as by Aharon (2003).  This explanation involves “large pulses of freshwater from the Mississippi River caused by a recession of the Laurentide Ice Sheet between 16 and 9 ka” (Portnoy and Gold, 2012).  This explanation would have also allowed for potential sympatric or parapatric speciation, because it contains multiple lane snapper habitat types (carbonate sediment, as well as mud and silt bottom).

Notably, the fact that the above explanation is favored by Portnoy and Gold for lane snapper divergence does not discount the explanations of Ginsberg (1952), Bert (1970), Dahlberg (1970), and Hewitt (1996), in terms of explaining the many other examples of species divergence exhibited within the northern Gulf.  It is most probable that many geological and ecological causes worked, sometimes in confluence, to create the divergences and hybridizations in species observed today.  A geographical depiction of many of the hypothesized explanations described by Portnoy and Gold is below.

Geographic Depiction

Geographical depiction of hypothesized triggers of species divergence in the northern Gulf of Mexico (Portnoy and Gold, 2012)

In addition to the species divergence observed in our survey, another interesting difference noted in our catches along the western coast of Florida was the emergence of lionfish.  These invasive species are native to the Indian Ocean and southwest Pacific Ocean, and they were most likely introduced by humans into the waters surrounding Florida.  There are two lionfish species that are invasive in Florida, P. miles and P. volitans (Morris, Jr. et al., 2008), and the earliest records of their introduction into Florida’s waters are from 1992 (Morris, Jr. et al., 2008).  Many characteristics have allowed these species to be successful alien invaders in these waters – (1) they are formidable, with venomous spines and an intimidating appearance, (2) they reproduce incredibly quickly, breed year-round, and mature at a young age, (3) they outcompete native predators for food and habitat, (4) they are indiscriminate feeders with voracious appetites, and (5) they take advantage of a sea that is over-fished, in which many of their predators are regularly being eliminated by humans (Witherington, 2012).

Life cycle of the lionfish

Life cycle of the lionfish

This invasion mechanism hauntingly reminds me of that of the Cane Toad, a very famous alien invader which has decimated the flora and fauna of Australia.  One of the main worrisome effects of lionfish around Florida is on coral reefs.  Lionfish “can reduce populations of juvenile and small fish on coral reefs by up to 90 percent…[and] may indirectly affect corals by overconsuming grazing parrotfishes, which normally prevent algae from growing over corals” (Witherington, 2012).

One of the ways in which Floridians are trying to eliminate this problem is through lionfish hunting tournaments.  CJ Duffie, a volunteer on this survey from Florida, has participated in these tournaments and also participates in lionfish research directed by the Florida Fish and Wildlife Commission.  CJ harvested the gonads of the lionfish we caught on Day 13 to take back to the lab for further analysis.  Floridians also actively promote the lionfish as a delicacy, in an attempt to encourage more people to eat the invasive species.  CJ described the fish as the best he has ever tried, so I was very easily intrigued.  A fillet was prepared from the large lionfish caught on Day 13 fish, and Second Cook (2C) Lydell Reed was able to cook it on the spot.  I agree with CJ – white, flakey, slightly sweet, this is the best fish I have ever tasted.

Personal Log

The survey is nearly over, and this will be my last post.  We are in transit back to Pascagoula, Mississippi, the ship’s home port.  I leave by plane from Mobile, Alabama for Austin on Friday, July 10, 2015.  I am eagerly anticipating walking on land, as I’ve heard it’s strange at first after being on a boat for awhile.  Apparently this weird feeling has a semi-formal name — “dock rock”.

This experience has truly been one of the best of my life, especially in terms of the raw amount I have learned every day.  Coming in, the sole knowledge of fish life I had derived from my stints fly fishing with my father, and most of this knowledge concerns freshwater fish.  I now feel as though I have a much more comprehensive knowledge of the biodiversity that exists in the Gulf of Mexico and a much greater appreciation for the diversity of life as a whole.  I have taken over 200 photos to document this biodiversity, accumulated a diverse collection of preserved specimens, and collected a wide variety of resources (textbooks, scientific papers, etc.) on marine life in the Gulf of Mexico.  These resources will surely make the preparation of a project-based activity for my students focused on this research a much easier feat.

Sharksucker (Echeneis naucrates)

Having fun with a sharksucker (Echeneis naucrates) during analysis of the last trawl catch

I have also learned how a large portion of marine field research is conducted.  We have surveyed dissolved oxygen levels in the water, plankton biodiversity, and bottomfish biodiversity throughout the northern Gulf, using established (and quite popular) research methods.  The knowledge I have gained here can be applied to the biodiversity project portion of my geobiology class, in which students conduct biodiversity surveys in local Austin-area parks and preserves.  I anxiously await the comprehensive results of this summer’s NOAA survey – the complete dissolved oxygen contour map, the biodiversity indexes for different regions of the Gulf, and plankton biodiversity data from Poland.  These data will definitely help me come to even more conclusions about the marine life in the Gulf and the factors affecting it.

Through this experience, I have also gained much appreciation for the diversity of careers that exist on board a NOAA research vessel.  I have learned about the great work of the NOAA Corps, a Commissioned Service of the United States.  I have learned from the fisherman, engineers, stewards, and other personnel on the boat, all required for a successful research survey.

First and foremost, I have to thank the science team on the night watch – fisheries biologists Kevin Rademacher and Alonzo Hamilton, FMES Warren Brown, and volunteer CJ Duffie.  These individuals were instrumental in helping me identify organisms, label my photos, and craft my blog posts and photo captions.  Kevin Rademacher provided me with most of the papers which I have referenced in this blog, and with no internet connectivity on the boat for around half of the trip, his library of information was essential.  For the “Notable Species Seen” section of this blog, Kevin also individually went through all of my species photos with me to help me add common and scientific names in the photo captions.  This took a great deal of his time, almost every day, and I am incredibly appreciative.

Night Watch

The rest of the night watch. From left to right — FMES Warren Brown and NOAA Fisheries Biologists Kevin Rademacher and Alonzo Hamilton

I also definitely need to thank Lead Fisherman Chris Nichols and Skilled Fisherman Chuck Godwin for their mentorship with CTD data collection and plankton sampling.  In addition, many thanks to Field Party Chief Andre Debose and Lieutenant Commander Eric Johnson for proofreading my blog entries and ensuring that my experience on the ship was a good one.  I enjoy learning from people much more than I enjoy learning from books, and these have been some of best (and most patient) teachers I have ever had.

Lastly, thanks so much to the NOAA Teacher at Sea staff for your work on this great program.  It truly makes a difference for many teachers and many students.  I have had an amazing time, and I am positive my students will benefit from what I have learned.

Survey Plot

The ship’s path during the survey, thus far. I have been on the boat for Leg 2, drawn in black.

Did You Know?

Lionfish venom is not contained within the tips of the fish’s spines.  Rather, glandular venom-producing tissue is located in two grooves that run the length of  each spine.  When skin is punctured by a spine, this glandular tissue releases the venom (a neurotoxin), which travels up the spine and into the wound by means of the grooves (Witherington, 2012).

Venomous Spines

Anatomy of the lionfish spine

Notable Species Seen

David Walker: Crossing the Mississippi River Delta (Days 10-12), July 5, 2015

NOAA Teacher at Sea
David Walker
Aboard NOAA Ship Oregon II
June 24 – July 9, 2015

Mission: SEAMAP Bottomfish Survey
Geographical Area of Cruise: Gulf of Mexico
Date: July 5, 2015

Weather Data from the Bridge

Weather Log 7/5/15

NOAA Ship Oregon II Weather Log 7/5/15

This has been some of the smoothest water I’ve seen yet on the ocean.  At times, you can’t even see wave motion on the surface of the ocean, and it looks more like a lake.  On July 5, 2015, waves were estimated to be 1 ft. in height, at most (see above weather log from the bridge).  Sky condition on July 5 began as scattered (SCT, 3-4 oktas), moved to broken (BKN, 5-7 oktas) and overcast (OVC, 8 oktas) by the afternoon and evening, and then returned to FEW (1-2 oktas) by 11 PM.  There was rain observed in the vicinity (VC/RA) at 4 PM, and some lightning (LTG) was observed in the late evening.

Science and Technology Log

The survey is still progressing smoothly.  We have just crossed the Mississippi River delta, and I have observed a much greater human presence in the water — many ships, mostly commercial shrimping vessels, and even more oil rigs than usual.

Of particular interest to me, we have caught many new species over the past couple of days.  One notable new catch on Day 11 was a giant hermit crab (Petrochirus diogenes), the largest species in the Gulf of Mexico.  In most cases, hermit crabs need to be removed from their shells in order to be successfully identified.  This process was much more difficult than I had imagined, and I ended up having to use a hammer to crack the shell.  The crab contained within was indeed large – it amazed me that such a large species could occupy such a moderately-sized shell.  After analyzing the crab in the laboratory, we quickly returned it to the ocean, in the hope that it would find another shell in which to occupy and survive.

Another interesting catch on Day 11 was a seabiscuit (Brissopsis alta).  This organism was caught at a station overlying a sandy/muddy bottom, this type of seafloor environment providing a habitat for these unique creatures.  We were able to prep the seabiscuit with bleach in the same manner in which we prepped the sand dollars a couple of days ago.  The product was a purely white – a very delicate, yet quite beautiful specimen for my classroom.  Much thanks to fisheries biologist Kevin Rademacher for his help in preparing these organisms.

On Days 11 and 12, we caught some particularly large individuals, which made for great photo opportunities.  On Day 11, we caught the largest roundel skate (Raja texana) that we’ve seen yet, and on Day 12, we netted a large gulf smoothhound (Mustelus sinusmexicanus), a shark species that interestingly has no teeth.  The rest of the night shift was encouraging me to take a photo with my hand down the shark’s mouth, but I settled for the typical catch photo.  This shark was swiftly returned to the water (head first) after laboratory analysis was conducted, and it survived the catch.

As we have to open up fish in order to sex them, it is a natural investigative temptation to look at the other anatomy inside the fish.  A usual focal point is the stomach, as many times, fish stomachs are very disproportionately bloated.  Many times, enlargement of organisms such as the air bladder, stomach, and eyes of caught fish is due to barotrauma.  When a fish is quickly taken from deep waters to the surface, the pressure rapidly decreases, causing internal gases to expand.  In certain cases, we have discovered very recently eaten fish inside organisms’ stomachs.  One particularly interesting example was the stomach of a threadtail conger (Uroconger syringinus), in which we found a yellow conger (Rhynchoconger flavus) of equal size!

Uroconger Ate Rhyncoconger

We found the yellow conger on the right inside the stomach of the threadtail conger on the left! Photo credit to Kevin Rademacher.

I have started to realize the very subtle differences between some species.  One great example of such subtle variance is found in two similar sole species – the fringed sole (Gymnachirus texae) and the naked sole (Gymnachirus melas).  The naked sole contains a faint secondary stripe in between each of the bold stripes on its back; the fringed sole does not have this stripe.  During our initial sorting of species, I unwittingly threw both of these species into the same basket.  Fortunately, fisheries biologist Kevin Rademacher noticed what I was doing and identified the distinguishing phenotypic difference.  I have adjusted the brightness, contrast, and shadowing of the below photos to make the difference in striping more apparent.

Flatfish, such as the soles above, have a very interesting developmental pattern from juvenile to adult.  Fisheries biologists Kevin Rademacher and Alonzo Hamilton were able to nicely summarize it for me.  As juveniles, they start off with eyes on both sides of their heads and swim in the same manner as normal fish.  However, once they get large enough to swim out of the current, they “settle out” onto the seafloor.  At this time, a very interesting series of morphological changes takes place.  Notably, the eyes of the fish migrate such that they are both on one side of the fish’s body.  This morphological change has clearly been evolutionary favored over generations, as it allows the fish to see with both of its eyes while slithering along the seafloor.  The side of the fish on which the eyes end up depends on the particular species of fish.  Flatfish are accordingly categorically defined as “right-eyed” or “left-eyed,” based on the side of the fish containing the eyes.  The procedure is fairly simple to define a flatfish a right-eyed or left-eyed.

  1. Look down at the side of the fish containing both of the eyes.
  2. Orient the fish such that the eye that migrated from the opposite side is on top.
  3. If the head faces left, the flatfish is defined as left-eyed.
  4. Otherwise, it is defined as right-eyed.

On many occasions, we have been able to keep some of our catch to later eat.  I have had fresh white shrimp, brown shrimp, red snapper, lane snapper, vermillion snapper, hogfish, and even paper scallops.  I have obtained lots of practice heading shrimp and fileting fish, as well as shucking scallops.  It has been very interesting to visualize the entire process, from catch to table.  It is true what they say, incredibly fresh seafood tastes much better.  Most of the credit here goes to Chief Steward (CS) Mike Sapien and Second Cook (2C) Lydell Reed, the chefs on the ship.

Also after my shift, I was able to visit the ship’s bridge for the first time during the day.  The environment at night is quite different on the bridge, as the NOAA Corps Officers driving the ship need to keep their eyes adjusted to the dark.  Accordingly, the only lights used in the bridge at night are red, reminding me of the lights used by the scientists I observed on a recent night trip to the UT McDonald Observatory.  My trip to the bridge during the day allowed me to observe the operation of the ship and many instruments clearly for the first time.  It was honestly quite intimidating — so many instruments, controls, and dials, and I had no clue what any of them did.  I was very scared to touch anything – the only instrument with which I braved to interact was a very nice pair of binoculars.  The ship is always driven by NOAA Corps Commissioned Officers.  During the time of my observation, Ensign (ENS) Laura Dwyer, a Junior Officer, and Lieutenant Junior Grade (LTRG) Larry Thomas, the ship’s Operations Officer, were on the bridge.  The Captain (Commanding Officer) of the ship, Master David Nelson, entered and exited periodically.  ENS Dwyer was very kind to point out to me different instruments on the bridge and discuss the operating of the ship.  Interestingly, the NOAA Ship Oregon II operates on a system similar to that of a car with a manual transmission – while the ship has two engines instead of one, each engine has a clutch.  There is also a controllable pitch system that allows the operator of the ship to change the angle of the propeller.  There are two RADAR devices, as well multiple GPS navigational systems, on which the stations of the survey are plotted.  The are multiples of each of these important ship systems as a safety measure.  Despite the GPS systems, the ship still has a chart table on the bridge, and even a chart room, where routes are plotted out in more detail.  The helm, which controls the rudder, is still a large, prominent wheel, just as it was in the pirate stories I read as a child.  ENS Dwyer told me, however, that helms are much more abbreviated in appearance in more modern ships.  She indicated that many members of the NOAA Corps appreciate the “vintage” feel of the bridge of the NOAA Ship Oregon II — the ship will be 50 years old in 2017!

We have more or less finished the intended stations for Leg 2 of this survey, but as we still have time left before we are due back in port, we have received orders to proceed through to Leg 3 stations.  These stations are entirely across the Gulf of Mexico, along the western coast of Florida.  The traveling time there is over 14 hours by boat, and we will be traveling more or less as the crow flies.  I am really looking forward to these new stations, as I have heard the biodiversity is vastly different.

Survey Locations

Sections of the 2015 SEAMAP Bottomfish Survey

Personal Log

Ever since my shift on Day 11, in which I felt particularly fatigued and engorged, I have been completing cardio workouts daily.  There is quite a bit of workout equipment stored in various places throughout the ship, and I have finally found an enjoyable cardio workout.  I am using a rowing machine that I found on the top deck of the ship, and I set it up to face the direction of the ship’s movement.  In this way, when I row, I feel as though I am actually pushing the boat through the water.  The wave motion and periodic jostling of the ship makes the rowing machine feel even more like the real thing, and I am forced to recall my days rowing at the crack of dawn on Lake Dunmore near Middlebury, Vermont while in college.

Workout Setup

My workout setup on the top deck of the ship

The Fourth of July on the boat was free of any special pomp and circumstance.  It was, more than anything, just another work day.  Fortunately, all of the employees on the boat get paid overtime for working this day, as well as weekend days.  I definitely missed the Zilker fireworks celebration in Austin (TX), but it was meaningful to be on a boat with members of the NOAA Corps, a Commissioned Service of the United States, on this important day for America.

I have made significant progress in Tender is the Night and am almost finished.  I have also spent free time watching the FIFA Women’s World Cup and the Wimbledon Championships on the satellite television upstairs.

Regarding my sleep, I have finally stopped taking Dramamine®.  Lo and behold, I have had no more nightmares, this lending further support to my theory that Dramamine® was the cause.

The days are still very exciting, and I have yet to encounter a day without a great deal of fresh learning.  On to Florida!

Did You Know?

The Navy Motion Picture Service provides encrypted DVDs for use on deployed ships.  In the upstairs lounge, there are well over 700 DVDs, from classics to quite new releases, organized for anyone to watch in their free time.

DVD Binder

On of the many DVD binders on the ship, courtesy of the Navy Motion Picture Service

Notable Species Seen

David Walker: Equilibrium at Sea (Days 6-9), July 3, 2015

NOAA Teacher at Sea
David Walker
Aboard NOAA Ship Oregon II
June 24 – July 9, 2015

Mission: SEAMAP Bottomfish Survey
Geographical Area of Cruise: Gulf of Mexico
Date: July 3, 2015

Weather Data from the Bridge

Weather Log 7/2/15

NOAA Ship Oregon II Weather Log 7/2/15

Weather has fortunately continued to be calm.  The only main deviation from clear skies has been haziness (symbolized “HZ” on the above weather log from 7/2/15).  On 7/2/15, sky condition varied from FEW (3-4 octas) in the very early morning, to SCT (3-4 octas) and BKN (5-7 octas) at midday and afternoon, to SCT (3-4 octas) in the evening and night.  Swell waves have varied throughout the past couple of days, from less that 1 meter to around 3 meters in height.

Science and Technology Log

The past few days honestly blend completely together in my mind.  I feel as though I have reached an equilibrium of sorts on the boat.  The night shift has proceeded normally – station to station, trawl to trawl, CTD data collection at each station, plankton collected periodically throughout the shift.  Certain trawl catches have been exceptionally muddy, which poses a further task, as the organisms must first be separated from all of the mud and cleaned, before they can be identified.

In addition, on Day 6, the trawl net was damaged on a couple of occasions.  I’ve realized that a trawl rig is quite the complicated setup.  The trawling we are doing is formally called “otter trawling”.  Two boards are attached at the top of the rig to aid in spreading out the net underwater.  To allow the net to open underwater, one of the two lead lines of the net contains floats to elevate it in the water column.  A “tickler chain” precedes the lead lines to stir fish from the sea floor and into the net.  The fish collected by the net are funneled into the terminating portion of the net, called the “cod end”.  FMES Warren Brown is an expert when it comes to this entire rig, and he is in charge of fixing problems when they arise.  On Day 6, Warren had to fix breaks in the net twice.  With help from Lead Fisherman Chris Nichols and Skilled Fisherman Chuck Godwin, new brummel hooks were attached to the head rope for one of the door lifting lines, and a new tickler chain was installed.

I also learned a lot more of the specifics involved in the workup of the plankton catch.  The dual bongo contains two collection nets in parallel.  Plankton is removed from the cod ends of these nets, but not combined.  The plankton from the left bongo is transferred to a mixture of formaldehyde (10% v/v) and sea water for preservation.  The plankton from the right bongo is transferred to 95% ethanol.  The reason for this is that different solvent mixtures are needed to best preserve different parts of the plankton in the sample.  The formaldehyde solution is best for fixing tissue, yet it tends to dissolve hard parts (for example, otoliths, discussed below).  The ethanol solution is better for preserving hard parts (bones, cartilage, etc.).  This explains the need for two bongos.  Workup of collected plankton from the Neuston net is similar, except many non-plankton species are often collected, which have to be removed from the sample.  Highlight non-plankton species from the past couple days have been sailfin flyingfish (Parexocoetus brachypterus) and a juvenile billfish (Istiophoridae).  Neuston-collected plankton is transferred to 95% ethanol.  This solvent is the only one needed here, as only DNA analysis and stock assessment are conducted on Neuston-collected plankton.  All plankton is shipped to Poland, where a lab working in collaboration with NOAA will analyze it.  Samples are broken down according to a priority species list sent by NOAA.

The CTD survey is coming along nicely.  Progress through July 1 is shown on the below bottom dissolved oxygen contour.  Similar trends to those commented on in my last blog post continue to be observed, as a further area of hypoxia has been exposed near the coastline.  You can see that our survey is progressing east toward Mississippi (we will finish this leg in Pascagoula, MI, though the survey will continue on to the Florida coast during Leg 3).

A couple of other distinct memories stand out in my mind from the past couple of days:

  • Sexing “ripe” fish. Sometimes, certain species of fish are so fertile over the summer that certain individuals are deemed “ripe”.  Instead of cutting into these fish, they can be more easily sexed by applying pressure toward that anus and looking for the expression of semen or eggs.  One of the species for which this technique is most often applied this time of year is the Atlantic cutlassfish (Trichiurus lepturus).  One must be careful, however, for as I found out, the gametes sometimes emit from the anus with much force, shooting across the room.  It only takes wiping fish semen off of your face once to remember this forever.
  • Flying fish. I saw my first flyingfish (Exocoetidae) during a plankton collection with the neuston net.  The net would scatter the fish, and they would fly for cover, sometimes 10-15 meters in distance.  Amazing.
  • Preparing sand dollars. Interestingly, the sand dollars we caught (Clypeaster ravenelii) looked brown/green when they came out of the ocean.  Sand dollars are naturally brownish, and in the ocean, they are most often covered in algae.  We kept a couple of these organisms to prepare.  To prepare, we first placed the sand dollars in a dilute bleach solution for awhile.  We then removed them and shook out the sand and internal organs.  We then placed them back in the bleach for a little longer, until they looked white, with no blemishes.  The contrast between the sand dollar, as removed from the ocean, and this pure white is quite remarkable.
  • Otoliths.  Fisheries biologist Kevin Rademacher showed me a nifty way to remove the otoliths from fish.  Otoliths, “commonly known as ‘earstones,’ are hard calcium carbonate structures located behind the brain of bony fishes,” which “aid fish in balance and hearing” (Florida Fish and Wildlife Conservation Commission).  When viewed under microscope and refracted light, otoliths show a pattern of dark translucent zones (representing period of quick growth) and white opaque zone (representing periods of slower growth).  By counting the white opaque zones (called “annuli”), fisheries biologists can estimate the age of the fish.  Granted, this process differs for different fish, as different fish species have different otolith size.  Accordingly, a species standard is always prepared (usually a fish raised from spawn, from which the otoliths are taken at a known age) to estimate the growth time associated with one whole annulus for the particular species.  Sample otoliths are compared to the standard to estimate age.  Otolith analysis also allows scientists to estimate “growth rates,…age at maturity, and trends of future generations” (Florida Fish and Wildlife Conservation Commission).  On this survey, we only take otoliths from fish that are wanted for further laboratory analysis, but are too large to store in the freezer.  On some surveys, however, otoliths are removed from all fish caught.  I got to remove the otoliths from a large red snapper (Lutjanus campechanus).  The first step is to make an incision to separate the tongue and throat from the lower jaw.  The hand is then inserted into the hole created, and using a fair bit of force, the throat and gills are ripped away from the head to expose the vertebrae.  The gills are then cut from the base of the vertebrae, to expose the bony bulb containing the sagittal otoliths.  Diagonal cutters are then used to crack open the boney bulb containing the sagittal otoliths, and the otoliths are removed using forceps.

Personal Log

I am still feeling great on the boat.  The work is quite tiring, and I usually go straight to the shower and the bed after my shift ends.  Interestingly, I think I’m actually gaining quite a bit of weight.  The work is hard and the food is excellent, so I’ve been eating a bunch. I’ve been getting 7-8 hours of sleep a night, which is more than I normally get when I am at home, especially during the school year.  One thing I have been noticing ever since the trip started is that I have been having quite nightmarish dreams every night.  This is rare for me, as I usually either don’t have dreams or can’t remember the ones that occur.  I initially thought that this might be due to the rocking of the boat, or maybe to the slight change in my diet, but I think I’ve finally found the culprit – Dramamine®.  Research has indicated that this anti-motion sickness drug can cause “disturbing dreams” (Wood, et al., 1966), and I have been taking this medication since the trip started.  This hypothesis is consistent with the observation that my nightmares lessened when I reduced my daily Dramamine® dose from 2 pills to one. I finished Everything is Illuminated and have begun a new novel (Tender is the Night, by F. Scott Fitzgerald). I am now well into the second week of my trip!

Did You Know?

Earrings can be made from fish otoliths (ear stones).  These seem to be quite popular in many port cities.  Check out this article from the Juneau (Alaska) Empire Newspaper.

Notable Species Seen