12/22/2016 |
Li, M., Pu, Y., Yoo, C.G., Gjersing, E., Decker, S.R., Doeppke, C., Shollenberger, T., Tschaplinski, T.J., Engle, N.L., Sykes, R.W., Davis, M.F., Baxter, H.L., Mazarei, M., Fu, C., Dixon, R.R., Wang, Z-Y., Stewart Jr., C.N., Ragauskas, A.J., "Study of traits and recalcitrance reduction of field-grown COMT down-regulated switchgrass", Biotechnology for Biofuels, 10:12, 2016. DOI: 10.1186/s13068-016-0695-7
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12/20/2016 |
Serba, D.D., Uppalapati, S.R., Krom, N., Mukherjee, S., Tang, Y., Mysore, K.S., Saha, M.C., "Transcriptome analysis in switchgrass discloses ecotype difference in photosynthetic efficiency", BMC Genomics, 17:1040, 2016. DOI: 10.1186/s12864-016-3377-8
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10/10/2016 |
Rao, X., Dixon, R.A., "The differences between NAD-ME and NADP-ME subtypes of C4 photosynthesis: more than decarboxylating enzymes", Frontiers in Plant Sciences, 7:1525, 2016. DOI: 10.3389/fpls.2016.01525
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08/25/2016 |
Bali, G., Khunsupat, R., Akinosho, H., Payyavula, R.S., Samuel, R., Tuskan, G.A., Kalluri, U.C., Ragauskas, A.J., "Characterization of cellulose structure of Populus plants modified in candidate cellulose biosynthesis genes", Biomass and Bioenergy, 94:146-154, 2016. DOI: 10.1016/j.biombioe.2016.08.013
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07/19/2016 |
Salazar, M.M., Grandis, A., Pattathil, S, Neto, J.L., Camargo, E.L.O., Alves, A., Rodrigues, J.C., Squina, F., Cairo, J.P.F., Buckeridge, M.S., Hahn, M.G., Pereira, G.A.G., "Eucalyptus cell wall architecture: clues for lignocellulosic biomass deconstruction", BioEnergy Research, 9(3):969-979, 2016. DOI: 10.1007/s12155-016-9770-y
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06/29/2016 |
Shi, J., Pattathil, S., Ramakrishnan, P., Anderson, N., Kim, J.I., Venkatachalam, Hahn, M.G., Chapple, C., Simmons, B., Singh, S., "Impact of engineered lignin composition on biomass recalcitrance and ionic liquid pretreatment efficiency", Green Chemistry, 2016 DOI: 10.1039/C6GC01193D
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06/24/2016 |
Pattathil, S., Ingwers, M.W., Victoriano, O.L., Kandemkavil, S., McGuire, M.A., Teskay, R.O., Aubrey, D.P., "Cell wall ultrastructure of stem wood, roots, and needles of a conifer varies in response to moisture availability", Frontiers in Plant Science, 7:882, 2016 DOI: 10.3389/fpls.2016.00882
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06/20/2016 |
Sun, Q., Khunsupat, R., Akato, K., Tao, J., Labbe, N., Gallego, N.C., Bozell, J.J., Rials, T.G., Tuskan, G.A., Tschaplinski, T.J., Naskar, A.F., Pu, Yunqiao; Ragauskas, A.J., "A study of poplar organosolv lignin after melt rheology treatment as carbon fiber precursors", Green Chemistry, 2016 DOI: 10.1037/c6gc000977h
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06/20/2016 |
Chai, M., Zhou, C., Molina, I., Fu, C., Nakashima, J., Li, G., Zhang, W., Park, J., Tang, Y., Jiang, Q., Wang, Z-Y, "A class II KNOX gene, KNOX4, controls seed physical dormancy", PNAS, 113(25):6997-7002, 2016. DOI: 10.1073/pnas.1601256113
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06/20/2016 |
Tolbert, A., Ma, T., Kalluri, U., Ragauskas, A.J., "Determing lignin S/G ration in the vessel and fiber cell walls of transgenic Populus plants", Energy & Fuels, 39(7):5716-5720, 2016. DOI: 10.1021/acs.energyfuels.6b00560
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06/20/2016 |
Ha, C.M., Escamilla-Trevino, L., Yarce, S., Kim, J.C., Ralph, H., Chen, F., Dixon, R.A., An essential role of caffeoyl shikimate esterase in monolignol biosynthesis in Medicago truncatula, Plant Journal, 86(5):363-375, 2016. DOI: 10.1111/tpj.13177
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06/11/2016 |
Li, Z., Hwang, S., Bar-Peled, M., "Discovery of a unique extracellular polysaccharide in members of the pathogenic bacillus that can co-form with spores", The Journal of Biological Chemistry, 291:19051-19067, 2016. DOI: 10.1074/jbc.M116.724708
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05/31/2016 |
Huang, Y., Wang, Y., Tan, L., Sun, L., Petrosino, J., Cui, M-Z., Hao, F., Zhang, M., "Nanospherical arabinogalactan proteins are a key component of the high-strength adhesive secreted by English Ivy," PNAS, 113(23):3193-3202, 2016. DOI: 10.1073/pnas.1600406113
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05/31/2016 |
Willis, J.D., Mazarei, M., Stewart Jr., C.N., "Transgenic Plant-produced hydrolytic enzymes and the potential of insect gut-derived hydrolases for biofuels", Frontiers in Plant Science, 7(675), 2016. DOI: 10.3389/fpls.2016.00675
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05/24/2016 |
Bhagia, S., Muchero, W., Kumar, R., Tuskan, G.A., Wyman, C.E., "Natural genetic variability reduces recalcitrance in poplar", Biotechnology for Biofuels, 9:106, 2016. DOI: 10.1186/s13068-016-0521-2
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05/09/2016 |
Barros, J., Serrani-Yarce, J.C., Chen, F., Baxter, D., Venables, B.J., Dixon, R.A., "Role of bifunctional ammonia-lyase in grass cell wall biosynthesis", Nature Plants, 2, 2016. DOI: 10.1038/nplants.2016.50
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04/28/2016 |
Wuddineh, W.A., Mazarei, M., Zhang, J., Turner, G.B., Decker, S.R., Sykes, R.W., Davis, M.F., Udvardi, M.K., Stewart, Jr., C.N., "Identification and overexpression of a Knotted1-like transcription factor in switchgrass (Panicum virgatum L.) for lignocellulosic feedstock improvement", Frontiers in Plant Science, 7(520), 2016. DOI: 10.3389/fpls.2016.00520
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04/26/2016 |
Pena, M.J., Kulkarni, A.R., Backe, J., Boyd, M., O'Neill, M.A., York, W.S., "Structural diversity of xylans in the cell walls of monocots", Planta, 244(3):589-606, 2016. DOI: 10.1007/s00425-016-2527-1
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04/26/2016 |
Serba, D.D., Sykes, R.W., Gjersing, E.L., Decker, S.R., Daverdin, G., Devos, K.M.; Brummer, E.C., Saha, M.C., "Cell wall composition and underlying QTL in an F1 Pseudo-testcross population of switchgrass", BioEnergy Research, 9(3):836-850, 2016. DOI: 10.1007/s12155-016-9733-3
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04/18/2016 |
Baxter, H.L., Mazarei, M., Fu, C., Cheng, Q., Turner, G.B., Sykes, R.W., Windham, M.T., Davis, M.F., Dixon, R.A., Wang, Z-Y., Stewart Jr., C.N., "Time course field analysis of COMT-downregulated switchgrass: Lignification, recalcitrance, and rust susceptibility", BioEnergy Research, 9(33):1-14, 2016. DOI: 10.1007/s12155-016-9751-1
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04/11/2016 |
Panday, S.K., Nookaraju, A., Fujino, T., Pattathil, S., Joshi, C.P., "Virus-induced gene silencing (VIGS)-mediated functional characterization of two genes involved in lignocellulosic secondary cell wall formation", Plant Cell Reports, 2016 DOI: 10.1007/s00299-016-2039-2
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03/21/2016 |
Bryan, A.C., Jawdy, S., Gunter, L., Gjersing, E., Sykes, R., Hinchee, M.A.W., Winkeler, K.A., Collins, C.M., Engle, N., Tschaplinski, T.J., Yang, X., Tuskan, G.A., Muchero, W., Chen, J-G., "Knockdown of a laccase in Populus deltoides confers altered cell wall chemistry and increased sugar release", Plant Biotechnology Journal, 1-11, 2016. DOI: 10.1111/pbi.12560
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03/03/2016 |
Yang, J., Worley, E., Ma, Q., Li, J., Torres-Jerez, I., Li, G., Zhao, P.X., Xu, Y., Tang, Y., Udvardi, M., "Nitrogen remobilization and conservation, and underlying senescence-associated gene expression in the perennial switchgrass Panicum virgatum", New Phytologist, 211(1):75-89, 2016. DOI: 10.1111/nph.13898
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02/19/2016 |
Rao, X., Lu, N., Li, G., Nakashima, J., Tang, Y., Dixon, R.A., "Comparative cell-specific transcriptomics revelas differentiation of C4 photosynthesis pathways in switchgrass and other C4 lineages", Journal of Experimental Botany, 67(6):1649-1662, 2016. DOI: 10.1093/jxb/erv553
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02/16/2016 |
Nar, M., Rizvi, H.R., Dixon, R.A., Chen, F., Kovalcik, A., D'Souza, N., "Superior plant-based carbon fibers from electronspum poly-(caffeyl alcohol)", Carbon, 103:372-383, 2016. DOI: 10.1016/j.carbon.2016.02.053
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01/01/2016 |
Vandavasi, V.G., Putnam, D.K., Zhang, Q., Petridis, L.; Heller, W.T., Nixon, B.T., Haigler, C.H., Kalluri, U., Coates, L., Langan, P., Smith, J.C., Meiler, J., O'Neill, H., "A structural study of CESA21 catalytic domain of arabidopsis cellulose synthesis complex: evidence for CESA trimers", Plant Physiology, 170(1):123-135 2015. DOI: 10.1104/pp.15.01356
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12/31/2015 |
Baxter, H.L., Alexander, L.W., Mazarei, M., Haynes, E., Turner, G.B., Sykes, R.W., Decker, S.R., Davis, M.F., Dixon, R.A., Wang, Z-Y., Stewart Jr., C.N., "Hybridization of downregulated-COMT transgenic switchgrass lines with field-selected switchgrass for improved biomass traits", Euphtica, 209:341-355, 2016. DOI: 10.1007/s10681-016-1632-3
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12/31/2015 |
Ziebell, A., Gjersing, E., Hinchee, M., Katahira, R., Sykes, R.W., Johnson, D.K., Davis, M.F., "Downregulation of p-Coumaroyl Quinate/Shikimate 3′-Hydroxylase (C3′H) or Cinnamate-4-hydrolylase (C4H) in Eucalyptus urophylla×Eucalyptus grandis Leads to Increased Extractability", Bioenergy Research, 8(128):1-9 2016 DOI: 10.1007/s12155-016-9713-7
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12/29/2015 |
Srivastava, A.C., Chen, F., Ray, T., Pattathil, S., Pena, M.J., Avci, U., Li, H., Huhman, D.V., Backe, J., Urbanowica, B., Miller, J.D., Bedair, M., Wyman, C.E., Sumner, L.W., York, W.S., Hahn, M.G., Dixon, R.A., Blancaflor, E.B., Tang, Y., Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis, Biotechnology for Biofuels, 8(224), 2015 DOI: 10.1186/s13068-015-0403-z
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12/26/2015 |
Ray, P., Craven, K.D., "Sebancina vermifera: a unique root symbiont with vast agronomic potential", World Journal of Microbiology and Biotechnology, 32(16), 2015. DOI: 10.1007/s11274-015-1970-7
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11/06/2015 |
Liu, W., Stewart Jr., C.N., "Plant synthetic promoters and transcription factors", Current Opinion in Biotechnology, 37:36-44, 2015. DOI: 10.1016/j.copbio.2015.10.001
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10/26/2015 |
Abraham, P.E., Wang, X., Ranjan, P., Nookaew, I., Zhang, B., Tuskan, G.A., Hettich, R.L., "Integrating mRNA and protein sequencing enables the detection and quantitative profiling of natural protein sequence variants of Populus trichocarpa," Journal of Proteome Research, 14(12):5318-5326 2015. DOI: 10.1021/acs.jproteome.5b00823
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10/19/2015 |
Sykes, V.R., Allen ,F.L., Mielenz, J.R., Stewart Jr., C.N., Windham, M.T., Hamilton, C.Y., Rodriguez Jr., M., Yee, K.L., "Reduction of ethanol yield from switchgrass infected with rust caused by puccinia emaculata", BioEnergy Research, 9(1):239-247 2015. DOI: 10.1007/s12155-015-9680-4
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10/05/2015 |
Joyce, B.L., Zheljazkov, V.D., Sykes, R., Cantrell, C.L., Hamilton, C., Mann, D.G.J., Rodriguez, M., Mielenz, J., Astatkie, T., Stewart Jr., C.N., "Ethanol and high-value terpene co-production from lignocellulosic biomass of cymbopogon flexuosus and cymbopogon martinii", PLOS ONE, 10(10):e0139195, 2015. DOI: 10.1371/journal.pone.0139195
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09/22/2015 |
Faraji, M., Fonseca, L.L., Escamilla-Trevino, L., Dixon, R.A., Voit, E.O., "Computational inference of the structure and regulation of the lignin pathway in Panicum virgatum", Biotechnology for Biofuels, 8(151), 2015. DOI: 10.1186/s13068-015-0334-8
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09/14/2015 |
Chen, X., Ma, Q., Rao, X., Tang, Y., Wang, Y., Li, G., Zhang, C., Mao, X., Dixon, Richard A., Xu, Y., "Genome-scale identification of cell-wall-related genes in switchgrass through comparative genomics and computational analyses of transcriptomic data", Bioenergy Research, 9(1):172-180 2015. DOI: 10.1007/s12155-015-9674-2
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08/30/2015 |
Hwang, S., Li, Z., Bar-Peled, Y., Aronov, A., Ericson, J., Bar-Peled, M., "The Biosynthesis of UDP-D-FucNAc-4N-(2)-oxoglutarate (UDP-Yelosamine) in Bacillus cereus ATCC 14579", The Journal of Biological Chemistry, 19(289):35620-35632, 2015. DOI: 10.1074/jbc.M114.614917
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08/27/2015 |
Sykes, R.W., Gjersing, E.L., Foutz, K., Rottmann, W.H., Kuhn, S.A., Foster, C.E., Ziebell, A., Turner, G.B., Decker, S.R., Hinchee, M.A.W., Davis, M.F., "Down-regulation of p-coumaroyl quinate/shikimate 3′-hydroxylase (C3′H) and cinnamate 4-hydroxylase (C4H) genes in the lignin biosynthetic pathway of Eucalyptus urophylla × E. grandis leads to improved sugar release", Biotechnology for Biofuels, 8(128), 2015. DOI: 10.1186/s13068-015-0316-x
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08/24/2015 |
Slater, S.C., Simmons, B.A., Rogers, T.S., Phillips, M.E., Nordahl, K., Davison, B.H., "The DOE Bioenergy Research Centers: history, operations and scientific output," Bioenergy Research, 8(3):881-896, 2015. DOI: 10.1007/s12155-015-9660-8
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08/11/2015 |
Yao, J., Guo, H., Chairprasongsuk, M., Zhao, N., Chen, F., Yang, Y., Guo, H., "Substrate-assisted catalysis in the reaction catalyzed by salicylic acid binding protein 2 (SABP2), a potential mechanism of substrate discrimination for some promiscuous enzymes", Biochemistry, 54(34):5366-5375, 2015. DOI: 10.1021/acs.biochem.5b00638
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07/20/2015 |
Wuddineh, W.A., Mazarei, M., Turner, G.B., Sykes, R.W., Decker, S.R., Davis, M.F., Stewart, Jr., C.N., "Identification and molecular characterization of the switchgrass AP2/ERF transcription factor superfamily, and overexpression of PvERF001 for improvement of biomass characteristics for biofuel", Frontiers in Bioengineering and Biotechnology, 3(101), 2015. DOI: 10.3389/fbioe.2015.00101
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07/09/2015 |
McLean, R., Hobbs, J.K., Suits, M.D., Tuomivaara, S.T., Jones, D., Boraston, A.B., Abbott, D.W., "Functional analyses of resurrected and contemporary enzymes illuminate an evolutionary path for the emergence of exolysis in polysaccharide lyase family two", The Journal of Biological Chemistry, 290(35):21231-21243 2015. DOI: 10.1074/jbs.M115.664847
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07/01/2015 |
Gallego-Giraldo, L., Shadle, G., Shen, H., Barros-Rios, J., Corrales, S. F., Wang, H., Dixon, R.A., "Combining enhanced biomass density with reduced lignin level for improved forage quality", Plant Biotechnology Journal, 14(3):895-904, 2015. DOI: 10.1111/pbi.12439
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06/22/2015 |
Ray, P., Ishiga, T., Decker, S.R., Turner, G.B., Craven, K. D., "A Novel Delivery System for the Root Symbiotic Fungus, Sebacina vermifera, and Consequent Biomass Enhancement of Low Lignin COMT Switchgrass Lines", Bioenergy Research, 8(3):922-933, 2015. DOI: 10.1007/s12155-015-9636-8
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05/14/2015 |
Davison, B.H., Brandt, C.C., Guss, A.M., Kaluri, U.C., Palumbo, A.V., Stouder, R.L., Webb, E.G., "The impact of biotechnological advances on the future of U.S. bioenergy", Biofuels, Bioproducts and Biorefining, 9(5):454-467, 2015. DOI: 10.1002/bbb.1549
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05/01/2015 |
Liu, W., Stewart, Jr., C.N., "Plant synthetic biology", Trends in Plant Science, 20:309-317, 2015. DOI: 10.1016/j.tplants.2015.02.004
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04/23/2015 |
De Souza, A.P., Kamel, C.L.A., Torres, A.F., Pattathil, S., Hahn, M.G., Trindade, L.M., Buckeridge, M.S., "How cell wall complexity influences saccharification efficiency in Miscanthus sinensis", Journal of Experimental Botany, 66(14):4351-4365, 2015. DOI: 10.1093/jxb/erv183
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03/01/2015 |
Biswal, A.K., Hao, Z., Pattathil, S., Yang, X., Winkeler, K., Collins, C., Mohanty, S.S., Richardson, E.A., Gelineo-Albersheim, I., Hunt, K., Ryno, D., Sykes, R.W., Turner, G.B., Ziebell, A., Gjersing, E., Lukowitz, W., Davis, M.F., Decker, S.R., Hahn, M.G., Mohnen, D., "Downregulation of GAUT12 in Populus deltoides by RNA silencing results in reduced recalcitrance, increased growth and reduced xylan and pectin in a woody biofuel feedstock", Biotechnology for Biofuels, 8(41), 2015. DOI: 10.1186/s13068-015-0204-4
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02/24/2015 |
Trumbo, J.L., Zhang, B., Stewart, Jr., C.N., "Manipulating microRNAs for improved biomass and biofuels from plant feedstocks", Plant Biotechnology Journal, 13(3):337-354, 2015. DOI: 10.1111/pbi.12319
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02/05/2015 |
Casler, M.D., Vermerris, W., Dixon, R.A., "Replication concepts for bioenergy research experiments", BioEnergy Research, 8(1):1-16, 2015. DOI: 10.1007/s12155-015-9580-7
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02/01/2015 |
Pattathil, S., Hahn, M.G., Dale, B.E., Chundawat, P.S., "Insights into plant cell wall structure, architecture and integrity using glycome profiling of native and AFEXtm pretreated biomass", Journal of Experimental Botany, 66(14):4279-4294, 2015. DOI: 10.1093/jxb/erv107
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01/30/2015 |
Muchero, W., Guo, J., DiFazio, S.P., Chen, J-G., Ranjan, P., Slavov, G.T., Gunter, L.E., Jawdy, S., Bryan, A.C., Sykes, R., Ziebell, A., Klapste, J., Porth, I., Skyba, O., Unda, F., El-Kassaby, Y.A., Douglas, C.J., Mansfield, S.D., Martin, J., Schackwitz, W., Evans, L.M., Czarnecki, O., Tuskan, G.A., "High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus", BMC Genomics, 16(24), 2015. DOI: 10.1186/s12864-015-1215-z
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01/20/2015 |
Serba, D.D., Uppalapati, S.R., Mukherjee, S., Krom, N., Tang, Y., Mysore, K.S., Saha, M.C., "Transcriptome profiling of rust resistance in switchgrass using RNA-Seq analysis", The Plant Genome, 8(2), 2015 DOI: 10.3835/plantgenome2014.10.0075
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01/07/2015 |
Baxter, H.L., Poovaiah, C.R., Yee, K., Mazarei, M., Rodriguez Jr., M., Thompson, O.A., Shen, H., Turner, G.B., Decker, S.R., Sykes, R.W., Chen, F., Davis, M.F., Mielenz, J.R., Davison, B.H., Dixon, R.A., Stewart Jr., C.N., "Field evaluation of transgenic switchgrass plants overexpressing PvMYB4 for reduced biomass recalcitrance", BioEnergy Research, 8(3):910-921, 2015. DOI: 10.1007/s12155-014-9570-1
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12/29/2014 |
Yang, J., Worley, E., Udvardi, M., "A NAP-AA03 regulatory module promotes chlorophyll degradation via ABA biosynthesis in Arabidopsis leaves", The Plant Cell, 26(12):4862-4874, 2014. DOI: 10.1105/tpc.114.133769
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12/16/2014 |
Yang, J., Worley, E., Torres-Jerez, I., Miller, R., Wang, M., Fu, C., Wang, Z-Y., Tang, Y., Udvardi, M., "PvNAC1 and PvNAC2 are associated with leaf senescence and nirtrogen use efficiency in switchgrass", Bioenergy Research, 8(2):868-880, 2014. DOI: 10.1007/s12155-014-9566-x
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12/02/2014 |
Brunner, A.M., Evans, L.M., Hsu, C-Y, Sheng, X., "Vernalization and the chilling requirement to exit bud dormancy: shared or separate regulation?", Frontiers in Plant Science, 5(732), 2014. DOI: 10.3389/fpls.2014.00732
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11/25/2014 |
Li, Z., Hwang, S., Ericson, J., Bowler, K., Bar-Peled, Maor, "Pen and Pal are nucleotide-sugar-dehydratases that convert UDP-GlcNAc to UDP-6-deoxy-D-GlcNAc-5,6-ene and then to UDP-4-keto-6-deoxy-L-AltNAc for CMP-pseudaminic acid synthesis in Bacillus thuringiensis", The Journal of Biological Chemistry, 290(2):691-704, 2014. DOI: 10.1074/jbc.M114.612747
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11/11/2014 |
Kalluri, U.C., Yin, H., Davison, B.H., "Systems and synthetic biology approaches to alter plant cell walls and reduce biomass recalcitrance, Plant Biotechnology Journal", 12(9):1207-1216, 2014. DOI: 10.1111/pbi.12283
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11/02/2014 |
Wuddineh, W.A., Mazarei, M., Poovaiah, C.R., Mann, D.G.J., Ziebell, A., Sykes, R.W., Davis, M.F., Udvardi, M.K., Stewart Jr., C.N., "Identification and overexpress of gibberellin 2-oxidase (GA2ox) in switchgrass (Panicum virgatum L.) for improved plant architecture and reduced biomass recalcitrance", Plant Biotechnology Journal, 13(5):636-647) 2014. DOI: 10.1111/pbi.12287
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10/30/2014 |
Zhou, C., Han, L., Li, G., Chai, M., Fu, C., Cheng, X., Wen, J., Tang, Y., Wang, Z-Y., "STM/BP-Like KNOXI Is Uncoupled fromARP in the Regulation of Compound Leaf Development in Medicago truncatula", The Plant Cell, 26(4):1464-1479 2014. DOI: 10.1105/tpc.114.123885
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10/07/2014 |
Payyavula, R.S., Tschaplinski, T.J., Jawdy, S.S., Sykes, R.W., Tuskan, G.A., Kalluri, U.C., "Metabolic profiling reveals altered sugar and secondary metabolism in response to UGPase overexpression in Populus", BMC Plant Biology, 14(265), 2014 DOI: 10.1186/s12870-014-0265-8
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10/01/2014 |
Chung, D., Pattathil, S., Biswal, A.K., Hahn, M.G., Mohnen, D., Westpheling, J., "Deletion of a Gene Cluster Encoding Pectin Degrading Enzymes in Caldicellulosiruptor bescii Reveals an Important Role for Pectin in Plant Biomass Recalcitrance", Biotechnology for Biofuels, 7(147) 2014 DOI: 10.1186/s13068-014-0147-1
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09/14/2014 |
Urbanowicz, B.R., Pena, M.J., Moniz, H.A., Moremen, K.W., York, W.S., "Two Arabidopsis Proteins Synthesize Acetylated Xylan in Vitro", The Plant Journal, 80(2):197-206, 2014. DOI: 10.1111/tpj.12643
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09/02/2014 |
Socha, A.M., Parthasarathi, J., Shi, R., Pattathil, S., Whyte, D., Bergerson, M., Venkatachalam, S., Hahn, M.G., Simmons, B.A., Singh, S., "Efficient biomass pretreatment using ionic liquids derived from lignin and hemicellulose", 111(35):3587-95, 2014. DOI: 10.1073/pnas.1405685111
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08/30/2014 |
Serba, D.D., Daverdin, G., Bouton, J.H., Devos, K.M., Brummer, C.E., Saha, M.C., "Quantitative trait loci (QTL) underlying biomass yield and plant height in switchgrass", Bioenergy Research, 8(1):307-324, 2014. DOI: 10.1007/s12155-014-9523-8
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08/28/2014 |
Hao, Z., Avci, U., Tan, L., Zhu, X., Glushka, J., Pattathil, S., Eberhard, S., Scholes, T., Rothstein, Lukowitz, W., Orlando, R., Hahn, M.G., Mohnen, D., "Loss of Arabidopsis GAUT12/IRX8 causes anther indehiscence and leads to reduced G lignin associated with altered matrix polysaccharide deposition", Frontiers in Plant Science, 5:357, 2014. DOI: 10.3389/fpls.2014.00357
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08/24/2014 |
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07/26/2014 |
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07/22/2014 |
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07/07/2014 |
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06/19/2014 |
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Liu, W., Yuan, J.S., Stewart J., C.N., "Advanced genetic tools for plant biotechnology", Nature Reviews, 14(11):781-793, 2013. DOI: 10.1038/nrg3583
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11/01/2013 |
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Ratnaparkhe, S., Venkatachalam, S., Hahn, M.G., Pattathil, S., Analyses using Cell Wall Glycan-directed Monoclonal Antibodies Reveal Xylan-degradation by Two Microbial Glycosyl Hydrolases in Cell Walls from Poplar and Switchgrass Biomass, Journal of Bioremediation & Biodegradation, S4(004), 2013.
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Zhao, N., Yao, J., Chaiprasongsuk, M., Li, G., Guan, J., Tschaplinski, T.J., Guo, H., Chen, F., Molecular and biochemical characterization of the jasmonic acid methyltransferase gene from black cottonwood (Populus trichocarpa), Phytochemistry, 94:74-81, 2014. DOI: 10.1016/j.phytochem.2013.06.014
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Cha, M., Wang, H., Chung, D., Bennetzen, J.L., Westpheling, J., Isolation and bioinformatic analysis of a novel transposable element, ISCbe4, from the hyperthermophilic bacterium, caldicellulosiruptor bescii, Journal of Industrial Microbiology and Biotechnology, 40(12):1443-8, 2013. DOI: 10.1007/s10295-013-1345-8
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Nageswara-Rao, M., Soneji, J.R., Kwit, C., Stewart Jr., C.N., Advances in biotechnology and genomics of switchgrass, Biotechnology for Biofuels, 6(77), 2013. DOI: 10.1186/1754-6834-6-77
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04/09/2013 |
Saha, P., Ray, T., Tang, Y., Dutta, I., Evangelous, N.R., Kieliszewski, M.J., Chen, Y., Cannon, M.C., Self-rescue of an EXTENSIN mutant reveals alternative gene expression programs and candidate proteins for new cell wall assembly in Arabidopsis, The Plant Journal, 75(1):104-16, 2013. DOI: 10.1111/tpj.12204
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Shen, H., Pooviah, C.R., Ziebell, A., Tschaplinski, T.J., Pattathil, S., Gjersing, E., Engle, N.L., Katahira, R., Pu, Y., Sykes, R., Chen, F., Ragauskas, A.J., Mielenz, J.R., Hahn, M.G., Davis, M., Stewart, Jr., N., Dixon, R.A., Enhanced characteristics of genetically modified switchgrass (Panicum virgatum L.) for high biofuel production, Biotechnology for Biofuels, 6(71), 2013. DOI: 10.1186/1754-6834-6-71
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03/24/2013 |
Serba, D., Wu, L., Daverdin, G., Bahri, B.A., Wang, X., Kilian, A., Bouton, J.H., Brummer, E.C., Saha, M.C., Devos, K.M., Linkage maps of lowland and upland tetraploid switchgrass ecotypes, Bioenergy Research, 6(3):953-965, 2013. DOI: 10.1007/s12155-013-9315-6
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Muchero, W., Sewell, M.M., Ranjan P., Gunter, L.E., Tschaplinski, T.J., Yin, T., Tuskan, G.A., Genome anchored QTLs for biomass productivity in hybrid populus grown under contrasting environments, PLOS ONE, 8(1):e54468, 2013. DOI: 10.1371/journal.pone.0014021
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01/17/2013 |
Hardin, C.F., Fu, C., Hisano, H., Xiao, X., Shen, H., Stewart Jr. C.N., Parrott, W., Dixon, R.A., Wang, Z-Y., Standardization of switchgrass sample collection for cell wall and biomass trait analysis, Bioenergy Research, 6(2):755-762, 2013. DOI: 10.1007/s12155-012-9292-1
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Ramanna, H., Ding, X.S., Nelson, R.S., Rationale for developing new virus vectors to analyze gene function in grasses through virus-induced gene silencing, Methods in Molecular Biology, 975:15-32, 2013. DOI: 10.1007/978-1-62703-278-0_2
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Lee, Y., Escamilla-Trevino, L., Dixon, R.A., Voit, E.O., Functional Analysis of Metabolic Channeling and Regulation in Lignin Biosynthesis: A Computational Approach, PLOS Computational Biology, 8(11):e1002769, 2012. DOI: 10.1371/journal.pcbi.1002769
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11/06/2012 |
de Souza, A.P., Leite, D.C.C., Pattathil, S., Hahn, M.G., Buckeridge, M.S., Composition and structure of sugarcane cell wall polysaccharides: implications for second-generation bioethanol production, BioEnergy Research, 6(2):564-579, 2012. DOI: 10.1007/s12155-012-9268-1
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Czamecki, O., Glaber, C., Chen, J.G., Mayer, K.F.X., Grimm, Evidence for a contribution of ALA synthesis to plastid-to-nucleus signaling, Frontiers in Plant Science, 3(236), 2012. DOI: 10.3389/fpls.2012.00236
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10/25/2012 |
Wullschleger, S.D., Weston, D.J., DiFazio, S.P., Tuskan, G.A., Revisiting the sequencing of the first tree genome: Populus trichocarpa, Tree Physiology, 33(4):357-64, 2012. DOI: 10.1093/treephys/tps081
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10/16/2012 |
Abraham, P., Giannone, R.J., Adams, R.M., Kalluri, U., Tuskan, G.A., Hettich, R.L.,"Putting the pieces together: high-performance LC-MS/MS provides network-, pathway-, and protein-level perspectives in Populus", Molecular and Cellular Proteomics, 12(1):106-19 2013. DOI: 10.1074/mcp.M112.022996
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10/14/2012 |
Uppalapati, S.R., Serba, D.D., Ishiga, Y., Szabo, L.J., Mittal, S., Bhandari, H.S., Bouton, J.H., Mysore, K.S., Saha, M.C., Characterization of the Rust Fungus, Puccinia emaculata, and Evaluation of Genetic Variability for Rust Resistance in Switchgrass Populations, Bioenergy Research, 6(2):458-468, 2012. DOI: 10.1007/s12155-012-9263-6
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09/28/2012 |
Tschaplinski, et. al, Down-regulation of the caffeic acid O-methyltransferase gene in switchgrass reveals a novel monolignol analog, Biotechnology for Biofuels, 5(71), 2012. DOI: 10.1186/1754-6834-5-71
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Jung, S., Foston,k M., Kalluri, U., Tuskan, G.A., Ragauskas, A.J., 3D Image using TOF-SIMS Revealing the Biopolymer Component Spatial and Lateral Distribution in Biomass,m Angewandte Chemiek. 51(48):12005-8, 2012. DOI: 10.1002/anie.201205243
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09/07/2012 |
Chen, F., Tobimatsu, Y., Jackson, L., Ralph, J., Dixon, R.A., Novel seed coat lignins in the Cactaceae: structure, districution and implications for the evolution of lignin diversity, The Plant Journal, 73(2):201-211, 2012. DOI: 10.1111/tpj.12012
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Nageswara-Rao, M., Stewart Jr., C.N., Kwit, C., Genetic diversity and structure of natural and agronomic switchgrass (Panicum virgatum L.) populations, Genetic Resources and Crop Evolution, 60(3):1057-1068, 2012. DOI: 10.1007/s10722-012-9903-x
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Zhou, C., Han, L., Fu, C., Chai, M., Zheng, W., Li, G., Tang, Y., Wang, Z., Identification and characterization of petiolule-like pulvinus mutants with abolished nyctinastic leaf movement in the model legume Medicago truncatula, New Phytologist, 196(1):92-100, 2012. DOI: 10.1111/j.1469-8137.2012.04268.x
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08/01/2012 |
Kulkarni, A.R., Pattathil, S., Hahn, M.G., York, W.S., O'Neill, M.A., Comparison of Arabinoxylan Structure in Bioenergy and Model Grasses, Industrial Biotechnology, 8(4):222-229, 2012. DOI: 10.1089/ind.2012.0014
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Pattathil, S., Saffold, T., Gallego-Giraldo, L., O'Neill, M., York, W.S., Dixon, R.A., Hahn, M.G., Changes in Cell Wall Carbohydrate Extractability Are Correlated with Reduced Recalcitrance of HCT Downregulated Alfalfa Biomass, Industrial Biotechnology, 8(4), 2012. DOI: 10.1089/ind.2012.0013
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Pena, Maria J., Tuomivaara, S.T., Urbanowicz, B.R., O'Neill, M.A., York, W.S., Methods for Structural Characterization of the Products of Cellulose - and Xyloglucan-hydrolyzing Enzymes, Methods in Enzymology, 510:121-139, 2012. DOI: 10.1016/B978-0-12-415931-0.00007-0
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05/11/2012 |
Bar-Peled, M., Urbanowicz, B.R., O'Neill, M.A., "The Synthesis and Origin of the Pectic Polysaccharide Rhamnogalacturonan II - Insights from Nucleotide Sugar Formation and Diversity", Frontiers in Plant Science, 3(92), 2012. DOI: 10.3389/fpls.2012.00092
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05/09/2012 |
Duceppe, M.O., Bertrand, A., Pattathil, S., Miller, J., Castonguay, Y., Hahn, M.G., Michaud, R., Dube, M.P., "Assessment of Genetic Variability of Cell Wall Degradability for the Selection of Alfalfa with Improved Saccharification Efficiency," BioEnergy Research, 5:904-914, 2012. DOI: 10.1007/s12155-012-9204-4
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04/24/2012 |
McKee, L.S., Pena, M.J., Rogowski, A., Jackson, A., Lewis, York, W.S., Krogh, K.B.R.M., Vikse-Nielsen, A., Skjot, M., Gilbert, H.J., Marles-Wright, J., Introducing endo-xylanase activity into an exo-acting arabinofuranosidase that targets side chains, PNAS, 109(17):6537-6542, 2012. DOI: 10.1073/pnas.1117686109
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04/03/2012 |
Mann, D.G.J., Abercrombie, L.L., Rudis, M.R., Milwood, R.J., Dunlap, J.R., Stewart, C.N., Very bright orange fluorescent plants: endoplasmic reticulum targeting of orange fluorescent proteins as visual reporters in transgenic plants, BMC Biotechnology, 12(17), 2012. DOI: 10.1186/1472-6750-12-17
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03/28/2012 |
Sun, G.L., Stewart, C.N., Xiao, P., Zhang, B.H., MicroRNA Expression Analysis in the Cellulosic Biofuel Crop Switchgrass (Panicum virgatum) under Abiotic Stress, PLOS ONE 7(3):e32017, 2012. DOI: 10.1371/journal.pone.0032017
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03/28/2012 |
Tuskan, G., DiFazio, S., Faivre-Rampant, R., Gaudet, M., Harfouche, A., Jorge, V., Labbe, J.L., Ranjan, P., Sabatti, M., Slavov, G., Street, N., Tschplinski, T.J., Yin, T.M., The obscure events contributing to the evolution of an incipient sex chromosome in Populus: a retrospective working hypothesis, Tree Genetics and Genomes, 8(3):559-571, 2012. DOI: 10.1007/s11295-012-0495-6
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03/08/2012 |
Iduri, B.R., Ellis, D.R., Slavov, G.T., Yin, T., Zhang, X., Muchero, W., Tuskan, G.A., DiFazio, S.P., Identification of quantitative trait loci and candidate genes for cadmium tolerance in Populus, Tree Physiology, 32(5):626-638, 2012. DOI: 10.1093/treephys/tps032
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02/28/2012 |
Wang, Z.-Y. and E. C. Brummer "Is genetic engineering ever going to take off in forage, turf and bioenergy crop breeding?" Annals of Botany, 110(6):1317-1325, 2012. DOI: 10.1093/aob/mcs027
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02/09/2012 |
Nag, A., T. V. Karpinets, Chang, C.H., Bar-Peled, M., "Enhancing a Pathway-Genome Database (PGDB) to capture subcellular localization of metabolites and enzymes: the nucleotide-sugar biosynthetic pathways of Populus trichocarpa." Database-The Journal of Biological Databases and Curation, bas013, 2012. DOI: 10.1093/database/bas013
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02/08/2012 |
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01/17/2012 |
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01/12/2012 |
Fu, C., R. Sunkar, et al. "Overexpression of miR156 in switchgrass (Panicum virgatum L.) results in various morphological alterations and leads to improved biomass production." Plant Biotechnology Journal, 10(4):443-452, 2012. DOI: 10.1111/j.1467-7652.2011.00677.x
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01/06/2012 |
Martinez, V., Ingwers, M., Smith, J., Glushka, J., Yang, T., Bar-Peled, M., Biosynthesis of UDP-4-keto-6-deoxyglucose and UDP-rhamnose in Pathogenic Fungi Magnaporthe grisea and Botryotinia fuckeliana, The Journal of Biological Chemistry, 287(2):879-892, 2012. DOI: 10.1074/jbc.M111.287367
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01/01/2012 |
Kwit, C., Stewart, C. N. , Gene flow matters in switchgrass (Panicum virgatum L.), a potential widespread biofuel feedstock, Ecological Applications, 22(1):3-7, 2012. DOI: 10.1890/11-1516.1
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12/22/2011 |
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12/20/2011 |
Yang, T., Y. Bar-Peled, et al. (2012). "In-microbe formation of nucleotide sugars in engineered Escherichia coli." Analytical Biochemistry 421(2): 691-698. DOI: 10.1016/j.ab.2011.12.028
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11/21/2011 |
Atmodjo, M.A., Sakuragi, Y., Zhu, X., Burrell, A.J., Mohanty, S.S., Atwood III, J.A., Orlando, R., Scheller, H.V., Mohnen, D., "Galacturonosyltransferase (GAUT)1 and GAUT7 are the core of a plant cell wall pectin biosynthetic homogalacturonan–galacturonosyltransferase complex", PNAS, 108(50):20225-20230, 2011. DOI: 10.1073/pnas.1112816108
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11/18/2011 |
Yin, Y., Huang, J., Gu, X., Bar-Peled, M., Xu, Y. (2011) "Evolution of Plant Nucleotide-Sugar Interconversion Enzymes." PLOS ONE, 6(11), 2011 DOI: 10.1371/journal.pone.0027995
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11/02/2011 |
Kulkarni, A., M. J. Peña, et al. , "The ability of land plants to synthesize glucuronoxylans predates the evolution of tracheophytes." Glycobiology 22(3):439-451, 2012. DOI: 10.1093/glycob/cwr117
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11/01/2011 |
Abraham, P., Adams, R., Giannone, R.J., Kalluri, U., Ranjan, P., Erickson, B., Shah, M., Tuskan, G.A., Hettich, R.L. "Defining the Boundaries and Characterizing the Landscape of Functional Genome Expression in Vascular Tissues of Populus using Shotgun Proteomics," Journal of Proteome Research 11:449–460 2013. DOI: 10.1021/pr200851y
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11/01/2011 |
Alahuhta, M., Chandrayan, P., Kataeva, I., Adams, M. W. W., Himmel, M. E. and Lunin, V. V. , “A 1.5 Å resolution X-ray structure of the catalytic module of Caldicellulosiruptor bescii family 3 pectate lyase.” Acta Crystallographica Section F, 67(12), 1498-1500, 2011. DOI: 10.1107/S1744309111038449
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11/01/2011 |
Casler, M.D., Tobias, C.M., Kaeppler, S.M., Buell, C.R., Wang, Z.Y., Cao, P., Schmutz, J., Ronald, Pa., The Switchgrass Genome: Tools and Strategies, The Plant Genome. 4(3): 273-282, 2011. DOI: 10.3835/plantgenome2011.10.0026
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11/01/2011 |
Broach, B., Gu, X., Bar-Peled, M., Biosynthesis of UDP-glucuronic acid and UDP-galacturonic acid in Bacillus cereus subsp. Cytotoxis NVH 391-98, The FEBS Journal, 279(1):100-112, 2012. DOI: 10.1111/j.1742-4658.2011.08402.x
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10/20/2011 |
Foston, M., Hubbell, C.A., Samuel, R., Jung, S., Fan, H., Ding, S.Y., Zeng, Y., Jawdy, S., Davis, M., Sykes, R., Gjersing, E., Tuskan, G.A., Kalluri, U., Ragauskas, A.J., Chemical, ultrastructural and supra molecular analysis of tension wood in Populus tremula x alba as a model substrate for reduced recalcitrance, Energy and Environmental Science, 4:4962-4971, 2011. DOI: 10.1039/c1ee02073k
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10/14/2011 |
Escamilla-Trevino, L., "Potential of Plants from the Genus Agave as Bioenergy Crops." Bioenergy Research, 5(1):1-9, 2012. DOI: 10.1007/s12155-011-9159-x
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10/11/2011 |
Shen, H., He, X., Poovaiah, C.R., Wuddineh, W.A., Ma, J., Mann, D.G.J., Abercrombie, L.A., Wang, H., Jackson, L., Tang, Y., Stewart, C.N. Jr., Chen, F. and Dixon, R.A, Functional characterization of the switchgrass (Panicum virgatum) R2R3-MYB transcription factor PvMYB4 for improvement of lignocellulosic feedstocks, New Phytologist, 193(1):121-36, 2012. DOI: 10.1111/j.1469-8137.2011.03922.x
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10/05/2011 |
Rodgers-Melnick, E., Mane, S.P., Dharmawardhana, P., Slavov, G.T., Crasta, O.R., Strauss, S.H., Brunner, A.M., DiFazio, S.P. "Contrasting Patterns of Evolution Following Whole Genome versus Tandem Duplication Events in Populus," Genome Research, 22(1):95-105, 2011. DOI: 10.1101/gr.125146.111
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09/28/2011 |
Mann, G.J., LaFayette, P.R., Abercrombie, L.L., King, Z.R., Mazarei, M., Halter, M.C., Poovaiah, C.R., Baxter, H., Shen, H., Dixon, R.A., Parrott, W.A., Stewart Jr., C.N. "Gateway-compatible vectors for high-throughput gene functional analysis in switchgrass (Panicum virgatum L.)." Plant Biotechnology Journal 10(2):226–236, 2012. DOI: 10.1111/j.1467-7652.2011.00658.x
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09/12/2011 |
Ye, Xia., Busov, V., Zhao, N., Meilan, R., McDonnell, L.M., Coleman, H.D., Mansfield, S.D., Chen, F., Li, Y., Cheng, Z.M., Transgenic Populus Trees for Forest Products, Bioenergy, and Functional Genomics, Critical Reviews in Plant Science, 30:415-434, 2011. DOI: 10.1080/07352689.2011.605737
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09/11/2011 |
Gallego-Giraldo, L., Escamilla-Trevino, L., Jackson, L.A., Dixon, R.A. "Salicylic acid mediates the reduced growth of lignin down-regulated plant." PNAS, 108(31):20814-20819, 2011. DOI: 10.1073/pnas.1117873108
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09/06/2011 |
DeMartini, J.D., Pattathil, S., Uvci, U., Szekalski, K., Mazumder, K., Hahn, M.G., Wyman, C.E., Application of monoclonal antibodies to investigate plant cell wall deconstruction for biofuels production, Energy and Environmental Science, 4(10):4332-4339, 2011. DOI: 10.1039/C1EE02112E
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09/05/2011 |
Stewart Jr., C. N., Liu, G.S., Bioenergy plants in the United States and China, Plant Science, 181(6):621-622, 2011. DOI: 10.1016/j.plantsci.2011.09.001
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09/01/2011 |
Yuan, J.A., Qu, Y., Li, S., Stewart Jr., C.N., US-China collaborative biofuel research: towards a global solution for petroleum replacement, Biofuels, 2(5):487-789, 2011. DOI: 10.4155/BFS.11.130
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09/01/2011 |
Yuan, J.S., Wang, X., Stewart Jr., C.N., Biomass feedstock: diversity as a solution, Biofuels, 2(5):491-493, 2011. DOI: 10.4155/BFS.11.135
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09/01/2011 |
Pu, Y., Kosa, M., Kalluri, U.C., Tuskan, G.A., Ragauskas, A.J., Challenges of the utilization of wood polymers: how can they be overcome?, Applied Microbiology and Biotechnology, 91(6):1525-1536, 2011. DOI: 10.1007/s00253-011-3350-z
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08/18/2011 |
Ye, X., Yuan, S., Guo, H., Chen, F., Tuskan, G.A., Cheng, Z.M. "Evolution and divergence in the coding and promoter regions of the Populus gene family encoding exyloglucan endotransglycosylase/ hydrolases." Tree Genetics and Genomes 8:177–194, 2012. DOI: 10.1007/s11295-011-0431-1
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08/12/2011 |
Joyce, B.L., Stewart Jr., C.N., Designing the perfect plant feedstock for biofuel production: Using the whole buffalo to diversify fuels and products, Biotechnology Advance, 30(5):1011-1022, 2012. DOI: 10.1016/j.biotechadv.2011.08.006
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08/12/2011 |
Zhang, Y., Zalapa, J.E., Jakubowski, A.R., Price, D.L., Acharya, A., Wei, Y., Brummer, E.C., Kaeppler, S.M., Casler, M.D, Natural Hybrids and Gene Flow between Upland and Lowland Switchgrass, Crop Science, 51, 2011. DOI: 10.2135/cropsci2011.02.0104
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08/12/2011 |
Ghimire, S.R., Craven, K.D.,The Ectomycorrhizal Fungus Sebacina vermifera, Enhances Biomass Production of Switchgrass (Panicum virgatum L.) Under Drought Conditions, Applied Microbiology and Biotechnology, 77(19):7063-7067, 2011 DOI: 10.1128/AEM.05225-11
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08/11/2011 |
Ge, Y., Fu, C., Bhandari, H., Bouton, J., Brummer, E.C., Wang, Z.Y., Pollen Viability and Longevity of Switchgrass (Panicum virgatum L.), Crop Science, 51(6):2698-2705, 2011. DOI: 10.2135/cropsci2011.01.0057
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07/25/2011 |
Xu, B., Escamilla-Trevino, L.L., Sathitsuksanoh, N., Shen, Z., Shen, H., Zhang, Y.H.P, Dixon, R.A., Zhao, B., Silencing of 4-coumarate:coenzyme A ligase in switchgrass leads to reduced lignin content and improved fermentable sugar yields for biofuel production, New Phytologist, 192(3):611-625, 2011. DOI: 10.1111/j.1469-8137.2011.03830.x
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07/23/2011 |
Zhang, Y., Zalapa, J.E., Jakubowski, A.R., Price, D.L., Acharya, A., Wei, Y., Brummer, E.C., Kaeppler, S.M., Casler, M.D., Post-glacial evolution of Panicum virgatum: centers of diversity and gene pools revealed by SSR markers and cpDNA sequences, Genetica, 139:933-948, 2011. DOI: 10.1007/s10709-011-9597-6
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07/11/2011 |
Mann, D.G., King, Z.R., Liu, W., Joyce, B.L., Percifield, R.J., Hawkins, J.S., LaFayette, Peter R., Artelt, B.J., Burris, J.N., Mazarei, M., Bennetzen, J.L., Parrott, W.A., Stewart Jr., C. Neal, Switchgrass (Panicum virgatum L.) ubiquitin gene (PvUbi1 and PvUbi2) promoters for use in plant transformation, BMC Biotechnology, 11(74), 2011. DOI: 10.1186/1472-6750-11-74
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07/05/2011 |
Xiaohan Yang, Ting Li, David Weston, Abhijit Karve, Jessy L. Labbe, Lee E. Gunter, Poornima Sukumar, Anne Borland, Jin-Gui Chen, Stan D. Wullschleger, Timothy J. Tschaplinski and Gerald A. Tuskan. Innovative Biological Solutions to Challenges in Sustainable Biofuels Production. In book "Biofuel Production-Recent Developments and Prospects", ( ed. Marco Aurélio dos Santos Bernardes), InTech, 15:375-414, 2011. ISBN: 978-953-307-478-8
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06/17/2011 |
Mohnen, D., Tierney, Mary L., Plants Get Hyp to O-Glycosylation, Science, 332(6036):1393-1394, 2011. DOI: 10.1126/science.1208641
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06/01/2011 |
Zhou, Chuanen, Han, Lu, Hou, Chunyan, Metelli, Allessandra, Qi, Liying, Tadege, Million, Mysore, Kirankumar S., Wang, Zeng-Yu, Developmental Analysis of a Medicago truncatula smooth leaf margin1 Mutant Reveals Context-Dependent Effects on Compound Leaf development, The Plant Cell, 23(6):2106-2124, 2011. DOI: 10.1105/tpc.111.085464
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05/20/2011 |
Correia, Marcia A., Mazumder, K., Bras, J.L., Firbank, S.J., Zhu, Y., Lewis, R.J., York, W.S., Fontes, C.M., Gilbert, H.J., The structure and function of an arabinoxylan-specific xylanase, Journal of Biological Chemistry, 286:22510-22520, 2011. DOI: 10.1074/jbc.M110.217315
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05/16/2011 |
Lee, Y., Chen, F., Gallego-Giraldo, L., Dixon, Richard A., Voit, E.O.,Integrative analysis of transgenic alfalfa (Medicago sativa L.) suggests new metabolic control mechanisms for monolignol biosynthesis, PLoS Computational Biology, 7(5):e1002047, 2011. DOI: 10.1371/journal.pcbi.1002047
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05/01/2011 |
Deshpande, A., Pontaroli, A.C., Chaluvadi, S.R., Lu, F., Bennetzen, J.L., Plant Genetics for Study of the Roles of Root Exudates and Microbes in the Soil, Root Genomics, 4:99-111, 2011. DOI: 10.1007/978-3-540-85546-0_4
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05/01/2011 |
Srivastava, A.C., Palanichelvam, K., Ma, J.Y., Steele, J., Blancaflor, E.B., Tang, Y.H., Collection and Analysis of Expressed Sequence Tags Derived from Laser Capture Microdissected Switchgrass (Panicum virgatum L. Alamo) Vascular Tissues, BioEnergy Research, 3(3):278-294, 2010. DOI: 10.1007/s12155-010-9080-8
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05/01/2011 |
Ye, Chu-Yu, Li, Ting, Tuskan, Gerald A., Tschaplinski, Timothy J., Yang, Xiaohan, Comparative analysis of GT14/GT14-like gene family in Arabidopsis, Oryza, Populus, Sorghum and Vitis, Plant Science, 181(6):688-695, 2011. DOI: 10.1016/j.plantsci.2011.01.021
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05/01/2011 |
Mazarei, Mitra, Al-Ahmad, Hani, Rudis, Mary R., Joyce, Blake J., Stewart Jr., C. Neal, Switchgrass (Panicum virgatum L.) cell suspension cultures: Establishment, characterization, and application, Plant Science, 18(6): 712-715, 2011. DOI: 10.1016/j.plantsci.2010.12.010
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05/01/2011 |
DiFazio S.P., G.T. Slavov, and C.S. Joshi, Populus: A premier pioneer system for plant genomics, In Joshi, C.P., and S.P. DiFazio (eds). Poplar. Science Publishers, Enfield, New Hampshire, 1:1-28, 2011. DOI: 10.1201/b10819-2
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03/18/2011 |
Cai, Bin, Yang, Xiaohan, Yang, Tuskan, Gerald A., Cheng, Zong-Ming, MicroSyn: A user friendly tool for detection of microsynteny in a gene family, BMC Bioinformatics, 12(79), 2011. DOI: 10.1186/1471-2105-12-79
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03/02/2011 |
Yang, Xiaohan, Tschaplinski, Timothy J., Hurst, Gregory B., Jawdy, Sara, Abraham, Paul E., Lankford, Patricia K., Adams, Rachel M., Shah, Manesh B., Hettich, Robert L., Lindquist, Erika, Kalluri, Udaya C., Gunter, Lee E., Pennacchio, Christa, Tuskan, Gerald A., Discovery and annotation of small proteins using genomics, proteomics, and computational approaches, Genome Research, 21(4):634-641, 2011. DOI: 10.1101/gr.109280.110
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03/01/2011 |
Studer, Michael E., DeMartini, Jaclyn D., Davis, Mark F., Sykes, Robert W., Davison, Brian H., Keller, Martin, Tuskan, Gerald A., Wyman, Charles E., Lignin content in natural Populus variants affects sugar release, PNAS, 108(15):6300-6305, 2011. DOI: 10.1073/pnas.1009252108
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03/01/2011 |
Bar-Peled, Maor, O'Neill, Malcolm A., "Plant Nucleotide Sugar Formation, Interconversion, and Salvage by Sugar Recycling", Annual Review of Plant Biology, 62:127-155, 2011. DOI: 10.1146/annurev-arplant-042110-103918
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03/01/2011 |
Fu, Chunxiang, Mielenz, Jonathan R., Xiao, Xirong, Ge, Yaxin, Hamilton, Choo Y., Rodriguez, Jr., Miguel, Chen, Fang, Foston, Marcus, Ragauskas, Arthur, Bouton, Joseph, Dixon, Richard A., Wang, Zeng-Yu, Genetic manipulation of lignin reduces recalcitrance and improves ethanol production from switchgrass, PNAS, 108(9):3803-3808, 2011. DOI: 10.1073/pnas.1100310108
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03/01/2011 |
Tsai, C.J., Ranjan, P., DiFazio, S.P., Tuskan, G.A., Johnson, V.E., Poplar Genome Microarrays, Genetics, Genomics and Breeding of Popular, 5:112-127, 2011. DOI: 10.1201/b10819-6
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03/01/2011 |
Srivastava, Avinach C., Tang, Yuhong, Diaz de la Garza, Rocio I., Blancaflor, Elison B., The plastidial folylpolyglutamate synthetase and root apical meristem maintenance, Plant Signaling and Behavior, 155(3):1237-1251, 2011. DOI: 10.1104/pp.110.168278
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02/17/2011 |
Yang, Xiaohan, Ye, Chu-Yu, Bisaria, Anjali, Tuskan, Gerald A., Kalluri, Udaya C., Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics, Plant Science, 181(6):675-687, 2011. DOI: 10.1016/J.plantsci.2011.01.020
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02/16/2011 |
Cartmell, A., McKee, Lauren S., Pena, Maria J., Larsbring, Johan, Brumer, Harry, Kaneko, Satoshi, Ichinose, Hitomi, Lewis, Richard J., Vikso-Nielson, Anders, Gilbert, Harry J., Marles-Wright, Jon, The Structure and Function of an Arabinan-specific α-1,2-Arabinofuranosidase Identified from Screening the Activities of Bacterial GH43 Glycoside Hydrolases , The Journal of Biological Chemistry, 286:15483-15495, 2011. DOI: 10.1074/jbc.M110.215962
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01/13/2011 |
Srivastava, Avinash C., Ramos-Parra, Perla A., Bedair, Mohamed, Robledo-Hernández, Ana L., Tang, Yuhong, Sumner, Lloyd W., Díaz de la Garza, Rocío I., Blancaflor, Elison B., The Folylpolyglutamate Synthetase Plastidial Isoform is Required for Postembryonic Root Development in Arabidopsis, Plant Physiology, Plant Physiology 155 (3):1237-1251, 2011. DOI: 10.1104/pp.110.168278
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01/07/2011 |
Chunxiang Fu, Xirong Xiao, Yajun Xi, Yaxin Ge, Fang Chen, Joseph Bouton, Richard A. Dixon and Zeng-Yu Wang Downregulation of Cinnamyl Alcohol Dehydrogenase (CAD) Leads to Improved Saccharification Efficiency in Switchgrass, Bioenergy Research, 4(3):153-164, 2011. DOI: 10.1007/s12155-010-9109-z
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01/01/2011 |
Mann, D.G.J, P.R. LaFayette, L.G Abercrombie, W.A. Parrott, C.N. Stewart, Jr. , pANIC: A versatile set of Gateway-compatible vectors for gene overexpression and RNAi-mediated down-regulation in monocots, Plant Trnasformation Technologies, Journal, 10(2):226-236, 2012. ISBN: 978-0-8138-2195-5
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01/01/2011 |
Chen, F., Tholl, D., Bohlmann, J., Pichersky, E., The family of terpene synthases in plants: a mid-size family of genes for specialized metabolism that is highly diversified throughout the kingdom, The Plant Journal, 66:212-229, 2011. DOI: 10.1111/j.1365-313X.2011.04520.x
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12/22/2010 |
Yin, Y., Mohnen, D., Gelineo-Albersheim, I., Xu, Y. and Hahn, M. G., Glycosyltransferases of the GT8 Family, in Annual Plant Reviews: Plant Polysaccharides, Biosynthesis and Bioengineering, Volume 41 (ed P. Ulvskov), Wiley-Blackwell, Oxford, UK, 2010. DOI: 10.1002/9781444391015.ch6
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12/17/2010 |
Yao, Jianzhuang, Xu, Qin, Chen, Feng, Guo, Hong, QM/MM Free Energy Simulations of Salicylic Acid Methyltransferase: Effects of Stabilization of TS-like Structures on Substrate Specificity, The Journal of Physical Chemistry B, 115:389-396, 2011. DOI: 10.1021/jp1086812
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11/22/2010 |
Yin, T., Zhang, X., Gunter, L., Priya, R., Sykes, R., Davis, M., Wullschleger, S.D., Tuskan, G.A.,Differential Detection of Genetic Loci Underlying Stem and Root Lignin Content in Populus, PLOS ONE, 5(11):e14021, 2010. DOI: 10.1371/journal.pone.0014021
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11/01/2010 |
Ghimire, S.R., Charlton, N.D., Bell, J.D., Krishnamurthy, Y.L. Craven, K.D., Biodiversity of fungal endophyte communities inhabiting switchgrass (Panicum virgatum L.) growing in the native tallgrass prairie of northern Oklahoma, Fungal Diversity, 47(1):19-27, 2010. DOI: 10.1007/s13225-010-0085-6
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10/25/2010 |
Tyler, Ludmila, Bragg, Jennifer N., Wu, Hiajie, Yang, Xiaohan, Guskan, Gerald A., Vogel, John P., Annotation and comparative analysis of the glycoside hydrolase genes in Brachypodium
distachyon, BMC Genomics, 11(600), 2010. DOI: 10.1186/1471-2164-11-600
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10/04/2010 |
Ziebell, A., Gracom, K., Katahira, R., Chen, F., Pu, Y. Q., Ragauskas, A., Dixon, R. A., Davis, M., Increase in 4-coumaryl alcohol units during lignification in alfalfa (Medicago sativa) alters the extractability and molecular weight of lignin, The Journal of Biological Chemistry, 285(50):38961-38968, 2010. DOI: 10.1074/jbc.M110.137315
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10/01/2010 |
Wang, H. Z., Avci, U., Nakashima, J., Hahn, M. G., Chen, F., Dixon, R. A., Mutation of WRKY transcription factors initiates pith secondary wall formation and increases stem biomass in dicotyledonous plants, PNAS, 107(51):22338-22343, 2010. DOI: 10.1073/pnas.1016436107
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10/01/2010 |
Jiang, Yingnan, McKinnon, Tyler, Varatharajan, Janani, Glushka, John, Prestegard, James H., Sornborger, Andrew T., Schuttler, Heiza-Berd, Bar-Peled, Maor, Time-Resolved NMR: Extracting the Topology of Complex Enzyme Networks, Biophysical Journal, 99(7):2318-26, 2010. DOI: 10.1016/j.bpj.2010.08.014
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09/30/2010 |
DiFazio, S., "The Populus Genome Initiative," in Principles and Practies of Plant Genomics, Volume 3:Advanced Genomics, ed. Kole, C., Abbott, A.G., (Science Publishers, 2010) 8:243-274. ISBN: 978-1-57808-683-2
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09/16/2010 |
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08/31/2010 |
Yang, Xiaohan, Ye, Chu-Yu, Cheng, Zong-Ming, Tschaplinski, Timothy J., Wullschleger, Stan D., Yin, Weilun, Xia, Xinli, Tuskan, Gerald A., Genomic aspects of research involving polyploid plants, Plant Cell Tissue and Organ Culture, 104(3):387-397, 2011. DOI: 10.1007/s11240-010-9826-1
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Zhou, C., Yin, Y.B., Dam, P., Xu, Y., Identification of Novel Proteins Involved in Plant Cell-Wall Synthesis Based on Protein-Protein Interaction Data, Journal of Proteome Research, 9(10):5025-5037, 2010. DOI: 10.1021/pr100249c
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Kausch, A.P., J. Hague, M. Oliver, L . S . Watrud, C. Mallory-Smith, V. Meier, A. Snow, and C. N. Stewart, Jr. 2010. Gene flow in genetically engineered perennial grasses: lessons for modification of dedicated bioenergy crops. Pp. 285-298, In: Widholm, J. and T. Nagata (Eds) Biotechnology in Agriculture and Forestry; P.N Maschia, J. Scheffran, and J. Widholm (Eds), 66. Plant Biotechnology for Sustainable Production of Energy and Co-products. Springer Verlag, Heidelberg DOI: 10.1007/978-3-642-13440-1_10
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08/01/2010 |
Kausch A.P., J. Hague, M. Oliver, Y. Li, H. Daniell, P.Mascia, C.N. Stewart, Jr. 2010. Genetic modification in dedicated bioenergy crops and strategies for gene confinement. Pp. 299-315. In: Widholm, J. and T. Nagata (Eds) Biotechnology in Agriculture and Forestry; P.N Maschia, J. Scheffran, and J. Widholm (Eds), 66. Plant Biotechnology for Sustainable Production of Energy and Co-products. Springer Verlag, Heidelberg. DOI: 10.1007/978-3-642-13440-1_11
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07/01/2010 |
Voelker, SL; Lachenbruch, B; Meinzer, FC; Jourdes, M; Ki, CY; Patten, AM; Davin, LB; Lewis, NG; Tuskan, GA; Gunter, L; Decker, SR; Selig, MJ; Sykes, R; Himmel, ME; Kitin, P; Shevchenko, O; Strauss, S.H., Antisense Down‐Regulation of 4CL Expression Alters Lignification, Tree Growth, and Saccharification Potential of Field‐Grown Populas, Plant Physiology, 154(2):874‐ 886, 2010. DOI: 10.1104/pp.110.159269
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Zhao, Q. A., Wang, H. Z., Yin, Y. B., Xu, Y., Chen, F., Dixon, R. A., Syringyl lignin biosynthesis is directly regulated by a secondary cell wall master switch, PNAS, 107(32):14496-14501, 2010. DOI: 10.1073/pnas.1009170107
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Mazumder, K., York, W.S., Structural analysis of arabinoxylans isolated from ball-milled switchgrass biomass, Carbohydrate Research, 345(15):2183-2193, 2010. DOI: 10.1016/j.carres.2010.07.034
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06/17/2010 |
Yang T, Echols M, Martin A, Bar-Peled M. (2010) Identification and characterization of a strict and a promiscuous N-acetylglucosamine-1-P uridylyltransferase in Arabidopsis. Biochem J. 430(2):275-84. DOI: 10.1042/BJ20100315
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06/11/2010 |
Kalluri U.C and Keller M, “Bioenergy Research: A new paradigm in multidisciplinary research”, Journal of the Royal Society Interface. 7(5):1391‐1401, 2010. DOI: 10.1098/rsif.2009.0564
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06/07/2010 |
Gu X, Glushka J, Lee SG, Bar-Peled M., Biosynthesis of a new UDP-sugar, UDP-2-acetamido-2-deoxyxylose, in the human pathogen Bacillus cereus subspecies cytotoxis NVH 391-98, Journal of Biological Chemistry, 285(32):24825-33, 2010. DOI: 10.1074/jbc.M110.125872
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06/01/2010 |
Yang T, Bar-Peled M., "Identification of a novel UDP-sugar pyrophosphorylase with a broad substrate specificity in Trypanosoma cruzi". Biochemical Journal, 429(3):533-543 2010 DOI: 10.1042/BJ20100238
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Tetard, L., Passian, A., Rarahi, R.H., Kalluri, U.C., Davison, B.H., Thundat, T., Atomic force microscopy of silica nanoparticles and carbon nanohorns in macrophages and red blood cells, Ultramicroscopy, 110(6):586-591, 2010. DOI: 10.1016/j.ultramic.2010.02.035
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05/29/2010 |
Moon, H.S., Abercrombie, J.M., Kausch, A.P., Stewart, C. Neal, Jr., Sustainable Use of Biotechnology for Bioenergy Feedstocks, Environmental Management, 46(4):531-538, 2010. DOI: 10.1007/s00267-010-9503-5
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Slavov, G.T., Leonardi, S., Adams, W.T., Strauss, S.H., DiFazio, S.P., Population substructure in continuous and fragmented stands of Populus trichocarpa, Heredity, 105(4):348-57, 2010. DOI: 10.1038/hdy.2010.73
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Hu, Z., R. Sykes, M.F. Davis, E.C. Brummer, and A.J. Ragauskas, Chemical profiles of switchgrass. Bioresource Technology, 101(9):3253-3257, 2010. DOI: 10.1016/j.biortech.2009.12.033
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Chen, X., Equi, R., Baxter, H., Berk, K., Han, J., Agarwal, S., Zale, J., "A High - Throughput Transient Gene Expression System for Switchgrass (Panicum virgatum L.) Seedlings," Biotechnology for Biofuels, 3(9) 2010. DOI: 10.1186/1754-6834-3-9
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04/11/2010 |
Kang, B.G., Xia, Y., Osburn, L.D., Stewart Jr., C.N., Cheng, Z.M., Transgenic hybrid aspen overexpressing the Atwbc19 gene encoding an ATP-binding cassette transporter confers resistance to four aminoglycoside antibiotics, Plant Cell Reports, 29(6):643-650, 2010. DOI: 10.1007/s00299-010-0850-8
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Yin, Y.B., Zhang, H., Olman, V., Xu, Y., Genomic arrangement of bacterial operons is constrained by biological pathways encoded in the genome, PNAS, 107(14):6310-5, 2010. DOI: 10.1073/pnas.0911237107
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03/19/2010 |
Gu X, Glushka J, Yin Y, Xu Y, Denny T, Smith J, Jiang Y, Bar-Peled M., Identification of a bifunctional UDP-4-keto-pentose/UDP-xylose synthase in the plant pathogenic bacterium Ralstonia solanacearum strain GMI1000, a distinct member of the 4,6-dehydratase and decarboxylase family, Journal of Biological Chemistry, 285(12):9030-9040, 2010. DOI: 10.1074/jbc.M109.066803
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Zhao Q, Gallego‐Giraldo L, Wang H, Zeng Y, Ding SY, Chen F, Dixon RA. An NAC transcription factor orchestrates multiple features of cell wall development in Medicago truncatula. Plant J. 63(1):100‐14, 2010. DOI: 10.1111/j.1365-313X.2010.04223.x
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Yin, Y.B., Chen, H.L., Hahn, M.G., Mohnen, D., Xu, Y., Evolution and Function of the Plant Cell Wall Synthesis-Related Glycosyltransferase Family 8, Plant Physiology, 153(4), 2010. DOI: 10.1104/pp.110.154229
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Sannigrahi, P., Ragauskas, A.J., Tuskan, G.A., Poplar as a feedstock for biofuels: A review of compositional characteristics, Biofuels Bioproducts and Biorefining-Biofpr, 4(2):209-226, 2010. DOI: 10.1002/bbb.206
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Zeng Y, Saar BG, Friedrich MG, Chen F, Liu Y, Dixon RA, Himmel ME, Xie XS and Ding S, Imaging Lignin‐Downregulated Alfalfa Using Coherent Anti‐Stokes Raman Scattering Microscopy, Bioenerg. Res. 3:272–277, 2010. DOI: 10.1007/s12155-010-9079-1
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Xie, Zhihong, Ulrich, Luke E., Zhulin, Igor B., Alexandre, Gladys, PAS domain containing chemoreceptor couples dynamic changes in metabolism with chemotaxis, PNAS, 107(5):2235-2240, 2010. DOI: 10.1073/pnas.0910055107
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Stewart, C. Neal, Jr., Shugart, Lee, Liu, Gong-She, Zhuang, Jie, Ma Yongqing, Tuskan, Gerald A., Meilan, Richard, Gentry, Randall W., Sayler, Gary S., China-U.S. Workshop on Biotechnology of bioenergy plants, Exotoxicology, 19(1):1-3, 2010. DOI: 10.1007/s10646-009-0448-5
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Kausch, A.P., J. Hague, M. Oliver, Y. Li, H. Daniell, P. Maschia, L.S. Watrud, and C.N.Stewart, Jr., Transgenic perennial biofuel feedstocks and strategies for bioconfinement, Biofuels, 1(1):163-176, 2010. DOI: 10.4155/BFS.09.11
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Escamilla-Treviño Luis L., Hui Shen, Srinivasa Rao Uppalapati, Tui Ray, Yuhong Tang, Timothy Hernandez, Yanbin Yin, Ying Xu, and Richard A. Dixon, Switchgrass (Panicum virgatum L.) possesses a divergent family of cinnamoyl CoA reductases with distinct biochemical properties, New Phytologist, 185(1):143-155, 2009. DOI: 10.1111/j.1469-8137.2009.03018.x
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12/01/2009 |
David G.J. Mann, Nicole Labbé, Robert W. Sykes, Kristen Gracom, Lindsey Kline, Isabella M. Swamidoss, Jason N. Burris, Mark Davis, C. Neal Stewart, Jr., Rapid assessment of lignin content and structure in switchgrass (Panicum virgatum L.) grown under different environmental conditions, Bioenergy Research, 2(4):246-256, 2009. DOI: 10.1007/s12155-009-9054-x
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Dixon, Richard, DOE BioEnergy Center Special Issue, The BioEnergy Sciences Center (BESC), Bioenergy Research, 2(4), 2009 DOI: 10.1007/s12155-009-9059-5
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Yunqiao Pu, Fang Chen, Angela Ziebell, Brian H. Davison and Arthur J. Ragauskas, NMR Characterization of C3H and HCT Down-regulated Alfalfa Lignin, Bioenergy Research, 2(4):198-208, 2009. DOI: 10.1007/s12155-009-9056-8
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Kang, B.G., Osburn, Lori, Kopsell, Dean, Tuskan, G.A., Cheng, Z.M., Micropropagation of Populus trichocarpa 'Nisqually-1': The genotype deriving the Populus reference genome, Journal of Plant Biotechnology, 99(3):251-257, 2009. DOI: 10.1007/s11240-009-9596-9
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Ranjan P, Yin T, Zhang X, Kalluri U.C, Yang X, Jawdy S, Tuskan G A, Bioinformatics‐based identification of candidate genes from QTLs associated with cell wall traits in Populus, BioEnergy Research, 3(2):172-182, 2009. DOI: 10.1007/s12155-009-9060-z
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Kalluri, U, Hurst G, Lankford P, Ranjan P and Pelletier D, Shotgun proteome profile of Populus developing xylem, Proteomics, 9(21):4871-4880, 2009. DOI: 10.1002/pmic.200800854
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10/20/2009 |
Shen, H., Fu, C., Xiao, X., Development control of lignification in stems of lowland switchgrass variety Alamo and the effects on saccharification efficiency, BioEnergy Research, 2(4):233-245, 2009. DOI: 10.1007/s12155-009-9058-6
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Shen, H., Yin, Y., Fang, C., A bioinformatic analysis of NAC genes for plant cell wall development in realation to lignocellulosic bioenergy production, BioEnergy Research, 2(4):217-232, 2009. DOI: 10.1007/s12155-009-9047-9
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10/14/2009 |
Yang, J., Worley, E., Wang, ., Lahner, B., Salt, D.E., Saha, M., Udvardi, M., "Natural variation for nutrient use and remobilization efficiencies in switchgrass", BioEnergy Research, 2:257-266, 2009 DOI: 10.1007/s12155-009-9055-9
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10/09/2009 |
Xu, Zhanyou, Zhang, Dandan, Hu, Jun, Zhou, Xin, Ye, Xia, Reichel, Kristen L., Stewart, Nathan R., Syrenne, Ryan D., Yang, Xiaohan, Gao, Peng, Shi, Weibing, Doeppke, Crissa, Sykes, Robert W., Burris, Jason N., Bozell, Joseph J., Cheng, Max Zong-Ming, Hayes, Douglas G., Labbe, Nicole, Davis, Mark, Stewart, C. Neal, Jr., Yuan, Joshua S., Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom, BMC Bioinformatics, 11(S3), 2009 DOI: 10.1186/1471-2105-10-S11-S3
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09/28/2009 |
Caffall KH, Mohnen D., The structure, function, and biosynthesis of plant cell wall pectic polysaccharides., Carbohydrate Research, 344(14):1879-1900, 2009. DOI: 10.1016/j.carres.2009.05.021
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Caffall, Kerry H., Pattathil, Sivakumar, Phillips, Sarah E., Hahn, Michael G., Mohnen, Debra, Arabidopsis thaliana T-DNA Mutants Implicate GAUT Genes in the Biosynthesis of Pectin and Xylan in Cell Walls and Seed Testa, Molecular Plant, 2(5):1000-1014, 2009. DOI: 10.1093/mp/ssp062
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09/05/2009 |
Cheng, Z.M., Tuskan, G.A., "Populus community mega-genomics: coming of age," Critical Reviews in Plant Sciences. 28(5):282-284, 2009. DOI: 10.1080/07352680903240933
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09/01/2009 |
Yingzhen Konga, Gongke Zhoua, Utku Avcia, Xiaogang Gua, Chelsea Jonesa, Yanbin Yin, Ying Xu, and M. G. Hahn, Two Poplar Glycosyltransferase Genes, PdGATL1.1 and PdGATL1.2, Are Functional Orthologs to PARVUS/AtGATL1 in Arabidopsis, Molecular Plant, 2(5):1040–1050, 2009. DOI: 10.1093/mp/ssp068
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Chen, F., Liu, C.J., Tschaplinski, T.J., Zhao, N., "Genomics of Secondary Metabolism in Populus: Interactions with Biotic and Abiotic Environments," Critical Reviews in Plant Sciences, 28:375-392, 2009. DOI: 10.1080/07352680903241279
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08/07/2009 |
Yang T, Bar-Peled L, Gebhart L, Lee SG, Bar-Peled M.G., " Identification of Galacturonic Acid-1-phosphate Kinase, a New Member of the GHMP Kinase Superfamily in Plants, and Comparison with Galactose-1-phosphate Kinase", Journal of Biological Chemistry, 284(32):21526-21535, 2009. DOI: 10.1074/jbc.M109.014761
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06/15/2009 |
Gu X, Wages CJ, Davis KE, Guyett PJ, Bar-Peled M., Enzymatic characterization and comparison of various poaceae UDP-GlcA 4-epimerase isoforms, Journal of Biochemistry, 146(4):527-34, 2009. DOI: 10.1093/jb/mvp099
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Ye, X., B-g Kang, L. D. Osburn, and Z.-M. Cheng. 2009 Identification of the Flavin-dependent Monooxygenase-encoding YUCCA Gene Family in Populus trichocarpa and Their Expression in Vegetative Tissues and in Response to Hormone and Environmental Stresses. PCTOC: J. of Plant Biotechnology 97:271–283, 2009. DOI: 10.1007/s11240-009-9526-x
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Drost, D., Novaes, E., Boaventura-Novaes, C., Benedict, C., Brown, R., Yin, T., Tuskan, G., A "Microarray-Based Genotyping and Genetic Mapping Approach for Highly Heterozygous Outcrossing Species Localizes a large fraction of the unassembles populus trichocarpa, genome sequence," Plant Journal, 58:1054-1067 2009. DOI: 10.1111/j.1365-313X.2009.03828.x
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Ghimire, S. R, Charlton, N., and Craven, K. D., "The mycorrhizal fungus, Sebacina vermifera, enhances seed germination and biomass production in switchgrass (Panicum virgatum L)", Bioenergy Research, 2(1-2):51-58, 2009. DOI: 10.1007/s12155-009-9033-2
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03/27/2009 |
Guyett P, Glushka J, Gu X, Bar-Peled M., Real-time NMR monitoring of intermediates and labile products of the bifunctional enzyme UDP-apiose/UDP-xylose synthase, Carbohydrate Research, 344(9):1072-8, 2009. PMID: 19375693
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03/13/2009 |
Hisano, H., Nandakumar, R., Wang, Z.Y., Genetic modification of lignin biosynthesis for improved biofuel production, Journal of In Vitro Cellular and Developmental Biology - Plant, 344(9):1072-1078, 2009. DOI: 10.1007/s11627-009-9219-5
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Zhou, F., Xu, Ying, RepPop: a database for repetitive elements in Populus trichocarpa, BMC Genomics, 10(14), 2009 DOI: 10.1186/1471-2164-10-14
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Yang XH, Kalluri UC, DiFazio SP, Wullschleger SD, Tschaplinski TJ, Cheng ZM, Tuskan GA. Poplar Genomics: State of the Science. Critical Reviews in Plant Sciences, 28(5):285-308, 2009 DOI: 10.1080/07352680903241014
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Mazarei, Mitra, Al-Ahmad, Hani, Rudis, Mary R., Stewart, Jr., C. Neal, Protoplast isolation and transient gene expression in switchgrass, Panicum virgatum L., Biotechnology Journal, 3:354-359, 2008. DOI: 10.1002/biot.200700189
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Zhao, N., Guan, J., Forouhar, F., Tschaplinski, T.J., Cheng, C‐M., Tong L., and Chen, F. Two poplar methyl salicylate esterases display comparable biochemical properties but divergent expression patterns. Phytochemistry 70:37‐44, 2009. DOI: 10.1016/j.phytochem.2008.11.014
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Yin, T. M., Zhang, X. Y. Gunter, L. E., Li, S. X., Wullschleger, S. D., Huang, M. R., Tuskan, G., A. Microsatellite primer resource for Populus developed from the mapped sequence scaffolds of the Nisqually-1 genome, New Phytologist, 181(2):498-503, 2009 DOI: 10.1111/j.1469-8137.2008.02663.x
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Burris, Jason N., Mann, David G.J., Joyce, Blake, Stewart, C. Neal, 2009, BioEnergy Research, An improved tissue culture system for embryogenic callus production and plant regeneration in switchgrass, 2(4):267-274, 2009. DOI: 10.1007/s12155-009-9048-8
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Slavov, G.T., Leonardi, S., Burczyk, J., Adams, W.T., Strauss, S.H., Difazio, S.P., Extensive pollen flow in two ecologically contrasting populations of Populus trichocarpa, Molecular Ecology, 18(2):357-373, 2009. DOI: 10.1111/j.1365-294X.2008.04016.x
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12/01/2008 |
Sykes, R., Kodrzycki, B., Tuskan, G., Foutz, K., Davis, M., Within tree variability of lignin composition in Populus, Wood Science and Technology, 42(8):649-661, 2008. DOI: 10.1007/s00226-008-0199-0
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York WS, O'Neill MA. 2008. Biochemical control of xylan biosynthesis - which end is up? Current Opinion in Plant Biology 11(3):258-265. DOI: 10.1016/j.pbi.2008.02.007
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Mohnen, D., Pectin structure and biosysthesis, Current Opinion in Plant Biology, 11(3):266-277, 2008. DOI: 10.1016/j.pbi.2008.03.006
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Xi, Y. J., Fu, C. X., Ge, Y. X., Nandakumar, R., Hisano, H., Bouton, J., Wang, Z. Y., Agrobacterium-Mediated Transformation of Switchgrass and Inheritance of the Transgenes, Bioenergy Research, 2(4):275-283, 2009 DOI: 10.1007/s12155-009-9049-7
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Mohnen, Debra, Maor Bar-Peled, and Chris Somerville , Cell wall polysaccharide synthesis, Biomass Recalcitrance, Ed. Michael Himmel, 5:94-187, Oxford: Blackwell Publishing, 2008. DOI: 10.1002/9781444305418.ch5
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Kalluri, U.C., Payyavula, R., Labbe, J.L., Engle, N., Bali, G., Jawdy, S.S., Sykes, R., Davis, M., Ragauskas, A., Tuskan, G., Tschaplinski, T., "Down-regulation of KORRIGAN-like endo-B-1, 4-glucanase genes impacts carbon partitioning, mycorrhizal colonization and biomass production in Populus", Frontiers in Plant Science, 2016 DOI: 10.3389/fpls.2016.01455
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DeBruyn, J.M., Bevard, D.A., Essington, M.E., McKnight, J.Y., Schaeffer, S.M., Baxter, H.L., Mazarei, M., Mann, D.G.J., Dixon, R.A., Chen, F., Zhuo, C., Wang, Z-Y., Stewart, C.N., "Field grown transgenic switchgrass (Panicum virgatum L.) with altered lignin does not affect soil chemistry, microbiology and carbon storage potential", Global Change Biology, 2016 DOI: 10.1111/gcbb.12407
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Dumitrache, AA., Natzke, J., Rodriguez, M., Yee, K., Thompson, O., Poovaiah, C., Shen, H., Mazarei, M., Baxter, H., Fu, C., Wang, Z-Y., Biswal, A., Li, G., Srivastavai, A. C., Tang, Y., Stewart, N., Dixon, R., Nelson, R., Mohnen, D., Mielenz, J., Brown, S., Davison, B., "Transgenic switchgrass (Panicum virgatum L.) targeted for reduced recalcitrance to bioconversion: a two-year comparative analysis of field-grown lines modified for target gene or gentic element expression", Plant Biotechnology Journal, 2016
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Meng, X., Pu, Y., Yoo, C.G., Li, M., Bali, G., Park, D-Y., Gjersing, E., Davis, M., Wellington, M., Tuskan, G., Tschaplinski, T., Ragauskas, A.J., "An in-depth understanding of biomass recalcitrance using natural poplar variants as the feedstock", ChemSusChem, 2016 DOI: 10.1002/cssc.201601303
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Li, M., Williams, D.L., Heckwolf, M., de Leon, N., Kaeppler, S., Sykes, R.W., Hodge, D., "Prediction of cell wall properties and response to deconstruction using alkaline pretreatment in diverse maize genotypes using py-MBMS and NIR", BioEnergy Research, 2016
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