| 01/10/2017 |
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| 01/04/2017 |
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| 01/03/2017 |
Kim, S.K., Chung, D., Himmel, M.E., Bomble, Y.J., Westpheling, J., "Engineering the N-terminal end of CelA results in improved performance and growth of Caldicellulosiruptor bescii on crystalline cellulose", Biotechnology and Bioengineering, 2016
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Zhou, J., Shao, X., Olson, D.G., Murphy, S.J-L., Tian, L., Lynd, L.R., "Determining the roles of the three alcohol dehydrogenases (AdhA, AdhB and AdhE) in Thermoanaerobacter ethanolicus during ethanol formation", Journal of Industrial Microbiology and Biotechnology, 2016
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| 12/22/2016 |
Wilson, C.M., Klingeman, D.M., Schlachter, C., Syed, M.F., Wu, C., Guss, A.M., Brown, S.D., " LacI transcriptional regulatory networks in Clostridium thermocellum DSM1313", Applied and Environmental Microbiology, 2016
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| 12/13/2016 |
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| 12/06/2016 |
Olson, D.G., Hori, M., Fuhrer, T., Cui, J., Zhou, J., Maloney, M.I., Amador-Noguez, D., Tian, L., Sauer, U., Lynd, L.R., "Glycolysis without pyruvate kinase in Clostridium Thermocellum", Metabolic Engineering, 2016
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| 11/29/2016 |
Zeng, Y., Yarbrough, J.M., Mittal, A., Tucker, M.P., Vinzant, T.B., Decker, S.R., Himmel, M.E., "In situ label-free imaging of hemicellulose in plant cell walls using stimulated Raman scattering microscopy", Biotechnology for Biofuels, 9:256, 2016.
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| 11/25/2016 |
Lynd, L.R., Guss, A.M., Himmel, M.E., Beri, D., Herring, C., Holwerda, E.K., Murphy, S.J., Olson, D.G., Paye, J., Rydzak, T., Shao, X., Tian, L., Worthen, R., "Advances in Consolidated bioprocessing using clostridium thermocellum and thermoanaerobacter saccharolyticum", Industrial Biotechnology: Microorganisms, 10, 2016
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| 11/01/2016 |
Lo, J., Olson, D.G., Murphy, S.J-L., Tian, L., Hon, S., Lanahan, A., Guss, A.M., Lynd, L.R., "Engineering electron metabolism to increase ethanol production in Clostridium thermocellum", Metabolic Engineering, 2016
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| 10/28/2016 |
Xiong, W., Lin, P.P., Magnusson, L., Warner, L., Liao, J.C., Maness, P-C., Chou, K.J., "CO2-fixing one-carbon metabolism in a cellulose-degrading bacterium Clostridium thermocellum", PNAS, 2016
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| 09/30/2016 |
Tian, L., Lo, J., Shao, X., Zheng, T., Olson, D.G., Lynd, L.R., "Ferredoxin:NAD Oxidoreductase of thermoanaerobacterium saccharolyticum and its role in ethanol formationl", Applied and Environmental Microbiology, 2016
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| 09/20/2016 |
Yang, S., Fei, Qiang/ Zhang, Yaoping; Conteras, L.M., Utturkar, S.M., Brown, S.D., Himmel, M.E., Zhang, M., "Zymomonas mobilis as a model system for production of biofuels and biochemicals", Microbial Biotechnology, 2016
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| 09/06/2016 |
Thompson, R.A., Dahal, S., Garcia, S., Nookaew, I., Trinh, C.T., "Exploring complex cellular phenotypes and model-guided strain design with a novel genome-scale metabolic model of Clostridium thermocellum DSM 1313 implementing an adjustable cellulosome", Biotechnology for Biofuels, 2016
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| 08/25/2016 |
Kim, S-K., Chung, D., Himmel, M.E., Bomble, Y.J., Westpheling, J., "Heterologous expression of family 10 xylanases from Acidthermus cellulolyticus enhances the exoproteome of Caldicellulosiruptor bescii and growth on xylan substrates", Biotechnology for Biofuels, 9:176, 2016.
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| 08/10/2016 |
Layton, D.S., Trinh, C.T., "Microbial synthesis of a branched-chain ester platform from organic waste carboxylates", Metabolic Engineering Communications, 3:245-251, 2016.
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| 08/02/2016 |
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Wilson, D.B., "Microbial Diversity and Cellulase Production, New and Future Developments in Microbial Biotechnology and Bioengineering, Chapter 5, 2016
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Herring, C.D., Kenealy, W., Shaw, J., Corvalla, S., Olson, D., Zhang, J., Sillers, R., Tsakraklides, V., Bardsley, J., Throne, P., Rogers, S., Johnson, J., Foster, A., Shikhare, I., Klingeman, D., Brown, S., Davison, B., Lynd, L., Hogsett, D., "Strain and bioprocess improvement of a thermophilic anaerobe for the production of ethanol from wood", Biotechnology for Biofuels, 9:125, 2016.
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| 06/07/2016 |
Tian, L., Papanek, B., Olson, D.G., Rydzak, T., Holwerda, E.K., Zheng, T., Zhou, J., Maloney, M., Jiang, N., Giannone, R.J., Hettich, R.L., Guss, A.M., Lynd, L.R., "Simultaneous achievement of high ethanol yield and titer in Clostridium thermocellum", Biotechnology for Biofuels, 9:116, 2016.
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| 05/10/2016 |
Shao, X., Zhou, J., Olson, D.G., Lynd, L.R., "A markerless gene deletion and integration system for Thermoanaerobacter ethanolicus", Biotechnology for Biofuels, 9(100), 2016.
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| 04/26/2016 |
Hon, S., Lanahan, A.A., Tian, L., Giannone, R.J., Hettich, R.L., Olson, D.G., Lynd, L.R., "Development of a plasmid-based expression system in Clostridium thermocellum and it use to screen heterologous expression of bifunctional alcohol dehydrogenases (adhEs)", Metabolic Engineering Communications, 3:120-129, 2016.
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Beri, D., Olson, D.G., Holwerda, E.K., Lynd, L.R., Nicotinamide cofactor ratios in engineered strains of Clostridium thermocellum and Thermoanaerobacterium saccharolyticum, FEMS Microbiology Letters, 363(11), 2016.
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| 03/30/2016 |
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| 03/11/2016 |
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| 02/05/2016 |
Xu, Q., Resch, M.G., Podkaminer, K., Yang, S-H., Baker, J.O., Donohoe, B.S., Wilson, C., Klingeman, D.M., Olson, D.G., Decker, S.R., Giannone, R.J., Hettich, R.L., Brown, S.D., Lynd, L.R., Bayer, E.A., Himmel, M.E., Bomble, Y.J., "Dramatic performance of Clostridium thermocellum explained by its wide range of cellulase modalities", Science Advances, 2(2), 2016.
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| 02/02/2016 |
Groom, J., Chung, D., Olson, D.G., Lynd, L.R., Guss, A.M., Westpheling, J., "Promiscuous plasmid replication in thermophiles: use of a novel hyperthermophilic replicon for genetic manipulation of clostridium thermocellum its optimum growth temperature", Metabolic Engineering Communications, 3:30-38, 2016.
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Trinh, C. T., ed. Biotechnology for Biofuel Production and Optimization. 1st ed. 2016. Print. ISBN 9780081000533
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| 12/26/2015 |
Herring, C.D., Thorne, P.G., Lynd, L.R., "Clostridium thermocellum releases coumaric acid during degradation of untreated grasses by the action of an unknown enzyme", Applied Microbiology and Biotechnology, 8(224):2907-15, 2016.
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| 12/22/2015 |
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| 11/24/2015 |
Chen, M., Bu, L., Alahuhta, M., Brunecky, R., Xu, Q., Lunin, V.V., Brady, J.W., Crowley, M.F., Himmel, M.E., Bomble, Y.J., "Strategies to reduce end-product inhibition in family 48 glycoside hydrolases", Proteins: Structure, Function, and Bioinformatics, 84(3):295-304, 2015.
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| 11/10/2015 |
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| 11/06/2015 |
Cha, M., Chung, D., Westpheling, J., "Deletion of a Gene Cluster for [Ni-Fe] Hydrogenase Maturation in the Anaerobic Hyperthermophilic Bacterium Caldicellulosiruptor bescii Identifies Its Role in Hydrogen Metabolism", Applied Microbiology and Biotechnology, 100(4):1823-1831 2016.
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| 11/05/2015 |
Zeldes, B.M., Keller, M.W., Loder, A.J., Straub, C.T., Adams, M.W.W., Kelly, R.M., "Exremely thermophilic microorganisms as metabolic engineering platforms for production of fuels and industrial chemicals", Frontiers in Microbiology, 6:1209, 2016.
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| 10/13/2015 |
Thompson, R.A., Layton, D.S., Guss, A.M., Olson, D.G., Lynd, L.R., Trinh, C.T., "Elucidating central metabolic redox obstacles hindering ethanol production in clostridium thermocellum", Metabolic Engineering, 32:207-219, 2015.
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| 10/06/2015 |
Chung, D., Cha, M., Elkins, J.G., Guss, A., Westpheling, J., "Cellulosic Ethanol Production via Consolidated Bioprocessing at 75 ̊ C by Engineered Caldicellulosiruptor bescii", Biotechnology for Biofuels, 8(163), 2015.
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| 09/28/2015 |
Dassa, B., Utturkar, S., Hurt, R.A., Klingeman, D.M., Keller, M., Xu, J., Reddy, H.K., Borovok, I., Rozman, I., Grinberg, R.L., Zhivin, O., Bayer, E.A., Brown, S.D., "Near-complete genome sequence of the cellulolytic bacterium", Genome Announcements, 3(5):e01022-15, 2015.
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| 09/21/2015 |
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| 09/21/2015 |
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| 09/18/2015 |
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| 09/15/2015 |
Decker, S.R., Sykes, R.W., Turner, G.B., Lupoi, J.S., Doepkke, C., Tucker, M.P., Schuster, L.A., Mazza, K., Himmel, M.E., Davis, M.F., Gjersing, E., "High-throughput screening of recalcitrance variations in lignocellulosic biomass: total lignin, lignin monomers, and enzymatic sugar release", Journal of Visualized Experiments, 103, 2015.
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| 09/01/2015 |
Papanek, B., Biswas, R., Rydzak, T., Guss, A.M., "Elimination of metabolic pathways to all traditional fermentation products increases ethanol yields in Clostridium thermocellum", Metabolic Engineering, 32:49-54, 2015.
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| 09/01/2015 |
Lin, P.P., Mi, L., Morioka, A.H., Yoshino, K.M., Konishi, S., Xu, S.C., Papanek, B.A., Riley, L.A., Guss, A.M., Liao, J.C., "Consolidated bioprocessing of cellulose to isobutanol using Clostridium thermocellum", Metabolic Engineering, 31:44-52, 2015
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| 08/29/2015 |
Sand, A., Holwerda, E.K., Ruppertsberger, N.M., Maloney, M.B., Olson, D.G., Nataf, Y., Borovok, I., Sonenshein, A.L., Bayer, E.A., Lamed, R., Lynd, L.R., Shoham, Y., "Three cellulosomal xylanase genes in C. thermocellum are regulated by both vegetative SigA (σA) and alternative SigI6 (σI6) factors", FEBS Letters, 589(20:B):3133-3140, 2015.
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| 08/27/2015 |
Zeng, Y., Zhao, S., Wei, H., Tucker, M.P., Himmel, M.E., Mosier, N.S., Meilan, R., Ding, S-Y., "In situ micro-spectroscopic investigation of lignin in poplar cell walls pretreated by maleic acid", Biotechnology for Biofuels, 8(126), 2015.
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| 08/24/2015 |
Slater, S.C., Simmons, B.A., Rogers, T.S., Phillips, M.E., Nordahl, K., Davison, B.H., "The DOE Bioenergy Research Centers: history, operations and scientific output," Bioenergy Research, 8(3):881-896, 2015.
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| 08/01/2015 |
Chung, D., Young, J., Cha, M., Brunecky, R., Bomble, Y.J., Himmel, M.E., Westpheling, J., "Expression of the Acidothermus cellulolyticus E1 endoglucanase in Caldicellulosiruptor bescii enhances its ability to deconstruct crystalline cellulose", Biotechnology for Biofuels, 8(113), 2015.
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| 08/01/2015 |
Rooney, et. al., "Draft genome sequence of the cellulolytic and xylanolytic thermophile Clostridum clariflavum Strain 4-2a", Genome Announcements, 3(4), 2015.
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| 08/01/2015 |
Wilson, D.B., Processive Cellulases, "Direct Microbial Conversion of Biomass to Advanced Biofuels", 5:91-110, 2015.
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| 08/01/2015 |
Kruer-Zerhusen, N., Wilson, D.B., "Bacterial AA10 Lytic Polysaccharide Monooxygenases Enhance the Hydrolytic Degradation of Recalcitrant Substrates", Direct Microbial Conversion of Biomass to Advanced Biofuels, 7:111-127, 2015.
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| 08/01/2015 |
Hobdey, S.E., Donohoe, B.S., Brunecky, R., Himmel, M., Bomble, Y.J., "New Insights into Microbial Strategies for Biomass Conversion", Direct Microbial Conversion of Biomass to Advanced Biofuels, 7:111-127, 2015.
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| 08/01/2015 |
Morais, S., Himmel, M.E., Bayer, E.A., "New Paradigms for Engineering Plant Cell Wall Degrading Enzymes", Direct Microbial Conversion of Biomass to Advanced Biofuels, 8:129-149, 2015.
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| 08/01/2015 |
Takasumi, J.L., Liao, J.C., "Outlook for the Production of Butanol from Cellulolytic Strains of Clostridia", Direct Microbial Conversion of Biomass to Advanced Biofuels, 14:291-306, 2015.
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| 08/01/2015 |
Yarbrough, J.M., Mittal, A., Bomble, Y.J., Olstad, J., Wolfrum, E.J., Hobdey, S.E., Himmel, M.E., Vinzant, T.B., "Influence of Particle Size on Direct Microbial Conversion of Hot Water Pretreated Poplar by Clostridium thermocellum", Direct Microbial Conversion of Biomass to Advanced Biofuels, 15:307-319, 2015.
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| 08/01/2015 |
Brown, S.D., Sander, K.B., Wu, C-W., Guss, A.M., "Clostridium thermocellum: Engineered for the Production of Bioethanol", Direct Microbial Conversion of Biomass to Advanced Biofuels, 16:321-333, 2015.
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| 08/01/2015 |
Chung, D., Verbeke, T.J., Cross, K.L., Westpheling, J., Elkins, J.G., "Expression of a heat-stable NADPH-dependent alcohol dehydrogenase in Caldicellulosiruptor bescii results in furan aldehyde detoxification", Biotechnology for Biofuels, 8(102), 2015.
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| 07/27/2015 |
Scott, I.M., Rubinstein, G.M., Lipscomb, G.L., Basen, M., Schut, G.J., Rhaesa, A.M., Lancaster, W.A., Poole II, F.L., Kelly, R.M., Adams, M.W.W., "A new class of tungsten-containing oxidoreductase in the genus of the plant biomass-degrading, thermophilic bacteria Caldicellulosiruptor", Applied Environmental Microbiology, 81(20):7339-7347, 2015.
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| 07/24/2015 |
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| 07/20/2015 |
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| 07/15/2015 |
Yu, M., Ji, L., Neumann, D.A., Chung, D-H., Groom, J., Westpheling, J., He, C., Schmitz, R.J., "Base-resolution detection of N4-methylcytosine in genomic DNA using 4mC-Tet-assisted-bisulfite-sequencing", Nucleic Acids Research, 43(21), 2015.
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| 07/15/2015 |
Rydzak, T., Lynd, L.R., Guss, A.M., "Elimination of formate production Clostridium thermocellum", Journal of Industrial Microbiology and Biotechnology, 42(9):1263-1272, 2015.
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| 06/29/2015 |
Lo, J., Zheng T., Olson, D.G., Ruppertsberger, N., Truipathi, S.A., Guss, A.M., Lynd, L.R., "Deletion of nfnAB in Thermoanaerobacterium saccharolyticum and its effect on metabolism", Journal of Bacteriology, 197(18):2920-2929, 2015.
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| 06/08/2015 |
Morrell-Falvey, J.L., Elkins, J.G., Wang, Z-W., "Determination of the cellulase activity distribution in Clostridium thermocellum and Caldicellulosiruptor obsidiansis cultures using fluorescent substrate", Journal of Environmental Sciences, 34:212-218, 2015.
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Moinuddin, Syed G.A., Jourdes, M., Laskas, D.D., Ki, C., Cardenas, C.L., Kim, K.W., Zhang, D., Davin, L. B., Lewis, N.G., Insights into lignin primary structure and deconstruction from Arabidopsis thaliana COMT (caffeic acid O-methyl transferase) mutant Atomt1 , Organic and Biomolecular Chemistry, 8(17):3928-3946, 2010.
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| 07/19/2010 |
Bomble, Yannick J., Crowley, Michael F., Xu, Q.I., Himmel, Michael E., Computational Modeling in Lignocellulosic Biofuel Production, Modeling the Cellulosome Using Multiscale Models, 4:75-98, 2010.
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| 07/10/2010 |
Muddiman, D., Andrews, G., Lewis, D., Notey, J., Kelly, "Part I: characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptr saccharolyticus by GeLC-MS2", Analytical and Bioanalytical Chemistry, 398:377-389, 2010.
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| 07/02/2010 |
Vuong, T.V., Wilson, D.B., Glycoside Hydrolases: Catalytic Base/Nucleophile Diversity , Biotechnology and Bioengineering, 107(2):195-205, 2010.
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| 07/01/2010 |
Voelker, SL; Lachenbruch, B; Meinzer, FC; Jourdes, M; Ki, CY; Patten, AM; Davin, LB; Lewis, NG; Tuskan, GA; Gunter, L; Decker, SR; Selig, MJ; Sykes, R; Himmel, ME; Kitin, P; Shevchenko, O; Strauss, S.H., Antisense Down‐Regulation of 4CL Expression Alters Lignification, Tree Growth, and Saccharification Potential of Field‐Grown Populas, Plant Physiology, 154(2):874‐ 886, 2010.
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| 07/01/2010 |
Muddiman, David, Andrews, Genna, Lewis, Derrick, Notey, Jaspreet, Kelly, Robert, "Part I: characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptor scccharolyticus by GeLC-MS2," Annuals of Bioanalytical Chemistry, 398:377–389, 2010.
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| 07/01/2010 |
Muddiman, David, Andrews, Genna, Lewis, Derrick, Notey, Jaspreet, Kelly, Robert, "Part II: defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting", Annuals of Bioanalytical Chemistry, 398(1):391-404, 2010.
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| 07/01/2010 |
Zhang, Y.H.P., Renewable carbohydrates are a potential high-density hydrogen carrier, International Journal of Hydrogen Energy, 35(19):10334-10342, 2010.
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| 07/01/2010 |
Alahuhta, M., Xu, Q., Bomble, Y.J., Brunecky, R., Adney, W.S., Ding, S-Y., Himmel, M.E, Lunin, V.V., "The Unique Binding Mode of Cellulosomal CBM4 from Clostridium thermocellum Cellobiohydrolase A", Journal of Microbiology, 402(2):374-87, 2010.
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| 07/01/2010 |
Alahuhta, Markus, Xu Qi, Brunecky, Roman, Adney, William S., Ding, Shi You, Himmel Michael E, Lunin, Vladimir V., "Structure of a fibronectin type III-like module from Clostridium thermocellum", Structural Biology and Crystallization Communications, 66(8):878-880, 2010.
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| 06/27/2010 |
Muddiman, D., Andrews, G., Lewis, D., Notey, J., Kelly, R., "Part II: defining and quantifying individual and cocultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting", Analytical and Bioanalytical Chemistry, 398:391-404, 2010.
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| 06/11/2010 |
Kalluri U.C and Keller M, “Bioenergy Research: A new paradigm in multidisciplinary research”, Journal of the Royal Society Interface. 7(5):1391‐1401, 2010.
DOI: 10.1098/rsif.2009.0564
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| 06/01/2010 |
Zhang, Y. H. P., Sun, J. B., Zhong, J. J., Biofuel production by in vitro synthetic enzymatic pathway biotransformation, Current Opinion in Biotechnology, 21(5):663-669, 2010.
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| 06/01/2010 |
Izquierdo, J. A., Sizova, M. V., Lynd, L. R., Diversity of Bacteria and Glycosyl Hydrolase Family 48 Genes in Cellulolytic Consortia Enriched from Thermophilic Biocompost, Applied and Environmental Microbiology, 76(11):3545-3553, 2010.
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| 06/01/2010 |
Elkins, J. G., Raman, B., Keller, M., Engineered microbial systems for enhanced conversion of lignocellulosic biomass, Current Opinion in Biotechnology, 21(5):657-662, 2010.
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| 06/01/2010 |
Liu, W.J., Zhang, X.A., Zhang, Z.M., Zhang, Y.H.P., Engineering of Clostridium phytofermentans Endoglucanase Cel5A for Improved Thermostability, Applied and Environmental Microbiology, 76(14):4914-4917, 2010.
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| 06/01/2010 |
Zhang, X.Z., Sathisuksanoh, N., Zhang, Y.H.P., Glycoside hydrolase family 9 processive endoglucanase from Clostridium phytofermentans: heterologous expression, purfication, and synergy with family 48 cellobiohydrolase, Bioresource Technology, 101(14):5534-5538, 2010
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| 05/01/2010 |
Shaw, A., Joe, Hogsett, David A., Lynd, Lee R., Natural Competence in Thermoanaerobacter and Thermoanaerobacterium Species, Applied and Environmental Microbiology, 76(14):4713-4719, July 2010.
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| 04/07/2010 |
Yang, S.H., Pelletier, D.A., Lu, T.Y.S, Brown, S.D., The Zymomonas mobilis regulator Hfq and related Saccharomyces cerevisiae proteins contribute to tolerance against multiple lignocellulosic pretreatment inhibitors, BMC Microbiology, 10(135), 2010.
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| 04/01/2010 |
Yang, S.H., Land, M.L., Klingeman, D.M., Pelletier, D.A., Lu, T.Y.S., Martin, S.L., Guo, H.B., Smith, J.C., Brown, S.D., Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae, PNAS, 107(23):10398-10400, 2012.
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| 04/01/2010 |
Li, Y., Irvin, D.C., Wilson, D.B., Increased Crystalline Cellulose Activity via Combinations of Amino Acid Changes in the Family 9 Catalytic Domain and Family 3c Cellulose Binding Module of Thermobifida fusca Cel9A, Applied and Environmental Microbiology, 76(8):2582-2588, 2010.
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| 04/01/2010 |
Selig, Michael J., Tucker, Melvin P., Sykes, R., Reichel, D., Brunecky, R., Himmel, M.E., Davis, M.F., Decker, S.R., Lignocellulose recalcitrance screening by integrated high- throughput hydrothermal pretreatment and enzymatic, Industrial Biotechnology, 6(2), 2010.
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| 04/01/2010 |
Myung, S., Wang, Y. R., Zhang, Y. H. P., Fructose-1,6-bisphosphatase from a hyper-thermophilic bacterium Thermotoga maritima: Characterization, metabolite stability, and its implications, Process Biochemistry, 45(12):1882-1887, 2010.
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| 03/01/2010 |
Abulencia, C. B., Wells, S. M., Gray, K. A., Keller, M., Kreps, J.A., Accessing microbial communities relevant to biofuels production. in: R. H.Baltz, J. E.Davies, A. L.Demain (Eds.), Industrial Microbiology and Biotechnology, 3rd Edn, ASM press, Washington DC 2010, pp. 565–576.
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| 03/01/2010 |
Chen, Y., Sarkanen, S., "Macromolecular replication during lignin biosynthesis," Phytochemistry, 71(4):453-462, 2010.
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Mielenz, J.R., Hogsett, D.A., Improving microbial robutsness using systems biology, Manual of Industrial Microbiology and Biotechnology, 3rd Edition, p. 605-620, 2010.
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| 03/01/2010 |
Himmel, Michael E., Xu, Qi, Luo, Yonghua, Ding, Shi-You, Lamed, Raphael, Bayer, Edward A., Microbial enzyme systems for biomass conversion: emerging paradigms, Biofuels, 1(2):323-341, 2010.
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| 03/01/2010 |
Ye, X., Rollin, J., Zhang, Y.H.P., Thermophilic α-glucan phosphorylase from Clostridium thermocellum: Cloning, characterization and enhanced thermostability, Journal of Molecular Catalysis B: Enzymatic, 65(1-4):110-116, 2010.
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| 03/01/2010 |
Zhang, Z.Z., Zhang, Z., Zhu, Z., Sathitsuksanoh, N., Yang, Y., Zhang, Y.H.P., The noncellulosomal family 48 cellobiohydrolase from Clostridium phytofermentans ISDg: heterologous expression, characterization, and processivity, Applied Microbiology Biotechnology, 86(2):525-533, 2010.
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| 02/25/2010 |
Zeng Y, Saar BG, Friedrich MG, Chen F, Liu Y, Dixon RA, Himmel ME, Xie XS and Ding S, Imaging Lignin‐Downregulated Alfalfa Using Coherent Anti‐Stokes Raman Scattering Microscopy, Bioenerg. Res. 3:272–277, 2010.
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| 01/01/2010 |
Stewart, C. Neal, Jr., Shugart, Lee, Liu, Gong-She, Zhuang, Jie, Ma Yongqing, Tuskan, Gerald A., Meilan, Richard, Gentry, Randall W., Sayler, Gary S., China-U.S. Workshop on Biotechnology of bioenergy plants, Exotoxicology, 19(1):1-3, 2010.
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| 12/18/2009 |
Hamilton-Brehm, S.D., Mosher, J.J., Vishnivetskaya, T., Podar, M., Carroll, S., Allman, S., Phelps, T.J., Keller, M., Elkins, J.G., Caldicellulosiruptor obsidiansis sp. nov., an anaerobic, extremely thermophilic, cellulolytic bacterium isolated from Obsidian Pool, Applied and Environmental Microbiology, 76:1014-1020, 2010.
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| 12/15/2009 |
Vanfossen Amy L, Verhaart Marcel R A, Kengen Serve M W, Kelly Robert M., Carbohydrate utilization patterns for the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus reveal broad growth substrate preferences, Applied and Environmental Microbiology 75(24):7718-24, 2009.
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| 12/11/2009 |
Bochner, Barry, Gomez, Vanessa, Ziman, Michael, Yang, Shihui, Brown, Steven D., Phenotype MicroArray Profiling of Zymomonas mobilis AM4, Applied Biochemistry and Biotechnology, 161(1-8):116-123, 2010.
DOI: 10.1007/s12010-009-8842-2
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| 12/01/2009 |
Jeremy C. Smith, Mark Nimlos, Mike Himmel, Mike Crowley, John Brady, Supercomputers Tackle BIOFUEL Production Problems, SciDAC, 2009.
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| 12/01/2009 |
Sung-Jae Yang, Irina Kataeva, Juergen Wiegel, Yanbin Yin, Phuongan Dam, Ying Xu, Janet Westpheling and Michael W. W. Adams, Classification of 'Anaerocellum thermophilum' strain DSM 6725 as Caldicellulosiruptor bescii sp. Nov., International Journal of Systematic and Evolutionary, Microbiology, 60(9):2011-2015, 2010.
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| 12/01/2009 |
Liu, Y. S., Luo, Y. H., Baker, J. O., Zeng, Y. N., Himmel, M. E., Smith, S., Ding, S. Y., A single molecule study of cellulase hydrolysis of crystalline cellulose, Spie-Int Soc Optical Engineering, 7571(757103), 2010
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| 12/01/2009 |
Mielenz, J.R., Bardsley, J.S., Wyman, C.E., Fermentation of soybean hulls to ethanol while preserving protein value, Bioresource Technology, 100(14):3532-9, 2009.
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| 12/01/2009 |
Decker, Stephen R., Brunecky, Roman, Tucker, Melvin, P., Himmel, Michael E., Selig, Michael J., "High-throughput screening techniques for biomass conversion," Bioenergy Research, 2(4):179-192, 2009.
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| 11/01/2009 |
Zhang YHP. Production of Biocommodities and Bioelectricity by Cell-Free Synthetic Enzymatic Pathway Biotransformations: Challenges and Opportunities. Biotechnology and Bioengineering 105(4):663-677, 2010.
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| 11/01/2009 |
Kalluri, U, Hurst G, Lankford P, Ranjan P and Pelletier D, Shotgun proteome profile of Populus developing xylem, Proteomics, 9(21):4871-4880, 2009.
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| 10/22/2009 |
Patten A.M., Jourdes, M., Cardenas, C.L., Laskas, D.D., Nakazawa, Y., Chung, B.Y., Franceschi, V.R., Davin, L.B., Lewis, N.G., Probing native lignin macromolecular configuration in Arabidopsis thaliana in specific cell wall types: Further insights into limited substrate degeneracy and assembly of the lignins of ref8, fah 1–2 and C4H::F5H lines, Molecular BioSystems, 6(3):425-604, 2010.
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| 10/01/2009 |
Podar, Mircea, Keller, Martin, Hugenholtz, Philip, 2009, Single Cell Whole Genome Amplification of Uncultivated Organisms, Microbial Monogr, Series; 10, 2009.
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| 10/01/2009 |
Yang, S.H., Pappas, K.M., Hauser, L.J., Land, M.L., Chen, G.L., Hurst, G.B., Pan, C.L., Kouvelis, V.N., Typas, M.A., Pelletier, D.A., Klingeman, D.M., Chang, Y.J., Samatova, N.F., Brown, S.D., Improved genome annotation for Zymomonas mobilis, Nature Biotechnology, 27(10):893-894, 2009.
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| 09/25/2009 |
Sathitsuksanoh N, Zhu ZG, Ho T-J, Bai M-D, Zhang Y-HP,Bamboo saccharification through cellulose solvent-based biomass pretreatment followed by enzymatic hydrolysis at ultra-low cellulase loadings 101(13):4926-4929, 2009.
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| 09/01/2009 |
Y.H. Percival Zhang, Jiong Hong, and Xinhao Ye, Cellulase Assays, Biofuels: Methods and Protocols, Methods in Molecular Biology, Jonathan R. Mielenz (ed.), 581(14) 2009
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| 09/01/2009 |
Liu W, Bevan DR, Zhang Y-HP,The family 1 glycoside hydrolase from Clostridium cellulolyticum H10 is a cellodextrin glucohydrolase, Applied Biochemistry and Biotechnology, 161:1-8, 2009.
DOI: 10.1007/s12010-009-8782-x
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| 08/24/2009 |
Samuel,R., Pu, Y., Babu, R., Ragauskas, A.J.Structural Characterizations and comparison of switchgrass ball-milled lignin before and after dilute acid pretreatment A. Applied Biochemistry and Biotechnology, 162(1):62-74, 2010.
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| 07/01/2009 |
Zhu, Z. G., Sathitsuksanoh, N., Vinzant, T., Schell, D. J., McMillan, J. D., Zhang, Y. H. P., Comparative Study of Corn Stover Pretreated by Dilute Acid and Cellulose Solvent-Based Lignocellulose Fractionation: Enzymatic Hydrolysis, Supramolecular Structure, and Substrate Accessibility, Biotechnology and Bioengineering, 103(4),715-724, 2009
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| 06/28/2009 |
Wang, Y. R., Zhang, Y. H. P., Cell-free protein synthesis energized by slowly-metabolized maltodextrin, BMC Biotechnology, 9(58), 2009.
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| 06/19/2009 |
Liu, Yu-San, Yining Zeng, Yonghua Luo, Qi Xu, Michael E. Himmel, Steve J. Smith, and Shi-You Ding, "Does the Cellulose-Binding Module Move on the Cellulose Surface?", Cellulose, 16(4):587-597, 2009.
DOI: 10.1007/s10570-009-9306-0
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| 06/04/2009 |
Wang, Y., Zhang, Y.H.P., Overexpression and simple purification of the Thermotoga maritima 6-phosphogluconate dehydrogenase in Escherichia coli and its application for NADPH regeneration, Microbial Cell Factories, 8(30), 2009.
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| 06/01/2009 |
Kataeva IA, Yang SJ, Dam P, Poole FL, Yin Y, Zhou F, Chou WC, Xu Y, Goodwin L, Sims DR, Detter JC, Hauser LJ, Westpheling J, Adams WW, "Genome Sequence of the Anaerobic, Thermophilic, and Cellulolytic Bacterium "Anaerocellum thermophilum" DSM 6725", Journal of Bacteriology, 191(11):(3760-3761, 2009.
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| 05/28/2009 |
Sathitsuksanoh, N., Zhu, Z. G., Templeton, N., Rollin, J. A., Harvey, S. P., Zhang, Y. H. P., Saccharification of a Potential Bioenergy Crop, Phragmites australis (Common Reed), by Lignocellulose Fractionation Followed by Enzymatic Hydrolysis at Decreased Cellulase Loadings, Industrial and Engineering Chemistry Research, 48(13):6441-6447, 2009.
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| 05/01/2009 |
Yang, S.J., Kataeva, I., Hamilton-Brehm, S., Engle, N.D., Tschaplinski, T.J., Doeppke, Cr., Davis, M., Westpheling, J., Adams, M.W.W., Efficient degradation of lignocellulosic plant biomass without pretreatment by the thermophilic anaerobe, Anaerocellum thermophilium DSM 6725, Applied and Environmental Microbiology, 75(14):4762-4769, 2009
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| 05/01/2009 |
Xu, J.C., Crowley, M.F., Smith, J.C., Building a Foundation for Structure-Based Cellulosome Design for Cellulosic Ethanol: Insight into Cohesin-Dockerin Complexation from Computer Simulation, Protein Science, 18(5):949-959, 2009
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| 04/22/2009 |
Raman, B., Pan, C., Hurst, G. B., Rodriguez, M., McKeown, C. K., Lankford, Samatova, N. F., Mielenz, J. R., Impact of Pretreated Switchgrass and Biomass Carbohydrates on Clostridium thermocellum ATCC 27405 Cellulosome Composition: A Quantitative Proteomic Analysis, PLOS ONE, 4(4):e5271, 2009.
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| 04/01/2009 |
Liu, W.J., Hong, J., Bevan, D.R., Zhang, Y.H.P., Fast Identification of Thermostable Beta-Blucosidase Mutants on Cellobiose by a Novel Combinatorial Selection/Screening Approach, Biotechnology and Bioengineering, 103(6):1087-1094, 2009.
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| 03/09/2009 |
Keller, Martin, Hettich, Robert, "Environmental Proteomics: a Paradigm Shift in Characterizing Microbial Activities at the Molecular Level", Microbiology and Molecular Biology Reviews, 73(1):62-70, 2009.
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| 02/26/2009 |
Karpinets, T., Pelletier, D, Pan, C., Uberbacher, E.C., Melnichenko, G.V., Hettich, R.L., Samatove, N.F., Phenotype fingerprinting suggests the involvement of single-genotype consortia in degradation of aromatic compounds by Rhodopseudomonas palustris, PLOS ONE, 4(2):e4615, 2009.
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| 02/01/2009 |
Li, L. L., McCorkle, S. R., Monchy, S., Taghavi, S., van der Lelie, D., Bioprospecting metagenomes: glycosyl hydrolases for converting biomass, Biotechnology for Biofuels, 2(10), 2009.
DOI: 10.1186/1754-6834-2-10
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| 01/20/2009 |
Yang, S.H., Tschaplinski, T.J., Engle, N.L., Carroll, S.L., Martin, S.L., Davison, B.H., Palumbo, A.V., Rodriguez, M., Brown, S.D., Transcriptomic and metabolomic profiling of Zymomonas mobilis during aerobic and anaerobic fermentations, BMC Genomics, 10(34), 2009.
DOI: 10.1186/1471-2164-10-34
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| 01/01/2009 |
Keller, M., Schadt, C.W., Palumbo, A.V., Environment to Organisms and Genomes and Backed. Karsten Zengler, (2009), ASM Press. |
| 01/01/2009 |
Ye, Xinhao, Yiran Wang, Robert C. Hopkins, Michael W. W. Adams, Barbara R. Evans, Jonathan R. Mielenz, Y.-H. Percival Zhang, Spontaneous high-yield production of hydrogen from cellulosic materials and water catalyzed by enzyme cocktails , ChemSusChem, 2(2):149-52, 2009
DOI: 10.1002/cssc.200900017
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| 01/01/2009 |
Zhang YHP. A sweet out-of-the-box solution to the hydrogen economy: is the sugar-powered car science fiction? Energy and Environmental Science 2(3):272-282, 2009.
DOI: 10.1039/b818694d
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| 01/01/2009 |
Zhang Y-HP, Zhu Z, Rollin J, Sathisuksanoh N. 2010. Chapter 20. Advances in cellulose solvent- and organic solvent-based lignocellulose fractionation (COSLIF). ACS Symposium Series 1033: 365-379 (Cellulose solvents: For analysis, shaping and chemical modification), Oxford University Press, UK, ISBN13: 9780841200067.
DOI: 10.1021/bk-2010-1033.ch020
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| 01/01/2009 |
Zhiguang Zhu, Noppadon Sathitsuksanoha and Y.-H. Percival Zhang, Direct quantitative determination of adsorbed cellulase on lignocellulosic biomass with its application to study cellulase desorption for potential recycling, Analyst, 1347:2267-2272, 2009.
DOI: 10.1039/b906065k
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| 10/06/2008 |
Mao, Fenglou, Phuongan Dam, Jacky Chou, Victor Olman, and Ying Xu , "DOOR: a database for prokaryotic operons," Nucleic Acids Research, 37:D459-D463, 2009.
DOI: 10.1093/nar/gkn757
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| 08/01/2008 |
Moxley, Geoffrey, Zhiguang Zhu, and Y.-H. Percival Zhang ,Efficient Sugar Release by the Cellulose Solvent-Based Lignocellulose Fractionation Technology and Enzymatic Cellulose Hydrolysis , Journal of Agricultural and Food Chemistry, 56(17):7885–7890, 2008
DOI: 10.1021/jf801303f
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| 08/01/2008 |
Yuan, Joshua S., Kelly H. Tiller, Hani Al-Ahmad, Nathan R. Stewart, C. Neal Stewart, Jr., Plants to power: bioenergy to fuel the future, Trends in Plant Science, Vol. 13(8):421-429, 2008
DOI: 10.1016/j.tplants.2008.06.001
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| 07/01/2008 |
Hong, Jiong, Xinhao Ye, Yiran Wang and Y.-H. Percival Zhang Bioseparation of recombinant cellulose binding module-protein by affinity adsorption on an ultra-high-capacity cellulosic adsorbent, Analytica Chimica Acta, 621:193-199, 2008.
DOI: 10.1016/j.aca.2008.05.041
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| 06/20/2008 |
Hong, Jiong, Yiran Wang, Xinhao Ye and Y.-H. Percival Zhang , Simple protein purification through affinity adsorption on regenerated amorphous cellulose followed by intein self-cleavage, Journal of Chromatography A, 1194(2):150-154, 2008.
DOI: 10.1016/j.chroma.2008.04.048
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| 06/01/2008 |
Ding, Shi-You, Qi Xu, Michael Crowley, Yining Zeng, Mark Nimlos, Raphael Lamed, Edward A. Bayer, and Michael E. Himmel , A Biophysical Perspective of the Cellulosome: New Opportunities for Biomass Conversion , Current Opinion Biotechnology, 19(3):218-227, 2008
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| 06/01/2008 |
Blumer-Schuette, Sara E., Kataeva, Irina, Westpheling, Janet, Adams, Michael W.W., Kelly, Robert M., 2008, Extremely thermophilic microorganisms for biomass conversion; status and prospects, Current Opinion in Biotechnology, 19(3):210-217, 2008.
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| 04/01/2008 |
Ljungdaho, L.G., Kataeva, I.A., Uversky, V.V., "Contribution of domain interactions and calcium binding to the stability of carbohydrate-Active enzymes," Bioenergy, Judy D. Wall, Caroline S. Harwood and Arnold Demain eds., ASM Press, washington, DC, p.115-127, 2008.
ISBN-13: 9781555814786
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| 02/01/2008 |
Lynd, L. R., Laser, M. S., Brandsby, D., Dale, B. E., Davison, B., Hamilton, R., Himmel, M., Keller, M., McMillan, J. D., Sheehan, J., Wyman, C. E., How Biotech can transform biofuels, Nature Biotechnology, 26(2):169-172, 2008.
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| 01/07/2008 |
Keller, Martin, Ramos, Juan L., 2008, Microbial goods from single cells and metagenomes, Current Opinion in Microbiology, 11(3):195-197, 2008.
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| 01/01/2008 |
Ding, S.Y., Himmel, M., Xie, X.S., "Identify Molecular Structural Features of Biomass Recalcitrance Using Nondestructive Microscopy and Spectroscopy," Abstracts of papers of the american chemical society, 237, 2009.
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