Spencer Cody: Killing the Dots, June 13, 2016

Posted on June 14, 2016 by spencercody2014

NOAA Teacher at Sea

Spencer Cody

Onboard the NOAA Ship Fairweather

May 29 – June 17, 2016

Mission: Hydrographic Survey

Geographical Area of the Cruise: along the coast of Alaska

Date: June 13, 2016

Weather Data from the Bridge:

Observational Data:

Latitude: 55˚ 10.643′ N
Longitude: 132˚ 54.305′ W
Air Temp: 19˚C (66˚F)
Water Temp: 14˚C (58˚F)
Ocean Depth: 33 m (109 ft.)
Relative Humidity: 50%
Wind Speed: 6 kts (7 mph)
Barometer: 1,014 hPa (1,014 mbar)

Science and Technology Log:

“Killing dots” or manually flagging data points that are likely not accurately modeling hydrographic data is only the beginning of a very lengthy process of refining hydrographic data for new high-quality nautical charts. Credit Hannah Marshburn for the photo.

In the last post, I talked about how we collect the hydrographic data. The process of hydrographic data collection can be a challenge in of itself with all of the issues that can come up during the process. But, what happens to this data once it is brought back to the Fairweather? In many ways this is where the bulk of the work begins in hydrography. As each boat files back to the ship, the data they bring back is downloaded onto our servers here on the ship to begin processing. Just the process of downloading and transferring the information can be time consuming since some data files can be gigabytes worth of data. This is why the Fairweather has servers with terabytes worth of storage to have the capacity to store and process large data files. Once the data is downloaded, it is manually cleaned up. A survey technician looks at small slices of hydrographic data and tries to determine what is the actual surface of the bottom and what is noise from the multibeam echosounder. Leaving too many false data points in the slice of hydrographic data may cause the computer software to adjust the surface topography to reach up or below to something that in reality does not exist. The first phase of this is focused on just cleaning the data enough to prevent the hydrographic software from recognizing false topographies. Even though the data that does not likely represent accurate hydrographic points are flagged and temporarily eliminated from the topographic calculation, the flagged data points are retained throughout the process to allow for one to go back and see what was flagged versus what was retained. It is important to retain this flagged data through this process in case data that was thought to be noise from the echosounder really did represent a surface feature on the bottom.

Hydrographic Assistant Survey Technician Sam Candio is using a three dimensional viewer to clean the hydrographic data collected from that day’s launches.

Once this process is complete, the day’s section is added to a master file and map of the target survey area. This needs to happen on a nightly basis since survey launches may need to be dispatched to an area that was missed or one in which the data is not sufficient to produce quality hydrographic images. Each launch steadily fills in the patchwork of survey data; so, accounting for data, quality, and location are vitally important. Losing track of data or poor quality data may require another launch to cover the same area. After the survey area is filled in, refinement of the new map takes place. This is where the crude cleanup transitions into a fine-tuned and detailed analysis of the data to yield smooth and accurate contours for the area mapped. Data analysis and processing are the parts of hydrographic work that go unnoticed. Since this work involves many hours using cutting-edge technology and software, it can be easy to underappreciate the amount of work survey technicians go through to progress the data through all of these steps to get to a quality product.

Personal Log:

Dillion and family in Hoonah, Alaska.

Dear Mr. Cody,

Today we docked in Hoonah, Alaska. We had a whale show right under our balcony! They are incredible to watch. There is so much to see for wildlife in Alaska. (Dillion is one of my science students who went on an Alaska cruise with his family in May and will be corresponding with me about his experiences as I blog about my experiences on the Fairweather.)

Dear Dillion,

A friendly humpback is keeping our survey launch company as we map our assigned polygon.

I know what you mean about the wildlife. I am seeing wildlife all over the place too. On our transit to our survey site from Juneau, I saw numerous marine mammals: hump back whales, dolphins, and killer whales. On our last survey launch, we had two humpbacks stay within site of the boat the entire morning. They are remarkable creatures. Whenever we locate a marine mammal, we fill out a marine mammal reporting form allowing various interests to use these reports to estimate the population size and range of these animals. The waters off the Alaskan coast are full of marine life for a reason. It is a major upwelling area where nutrients from the ocean bottom are being forced up into the photic zone where organisms such as phytoplankton can use both the nutrients and sunlight to grow. This provides a large amount of feed for organisms all the way up the food chain. This area is also known for its kelp forests. Yes, if you were on the sea bottom in these areas dominated by kelp, it would look like a forest! Kelp are a very long- and fast-growing brown algae that provide food and habitat for many other marine organisms.

Kelp forests form on relatively shallow rocky points and ledges allowing for the holdfasts to form and latch onto the bottom giving the resulting algae growth the opportunity to toward the surface to collect large amounts of sunlight for photosynthesis.

Did You Know?

The RESON 7125sv multibeam echosounders found onboard the survey launches use a 200 kHz or 400 kHz sound frequency. This means the sound waves used fully cycle 200,000 or 400,000 times per second. Some humans can hear sounds with pitches as high as 19 kHz while some bat and dolphin species can hear between 100 and 150 kHz. No animal is known to have the capability to audibly hear any of the sound waves produced by the multibeam onboard our survey boats. Animals that use echolocation tend to have much higher hearing ranges since they are using the same premise behind acoustic mapping in hydrography but to detect food and habitat.

Can You Guess What This Is?

A. a marker buoy B. a water purification system C. an electric bilge pump D. a CTD sensor

The answer will be provided in the next post!

(The answer to the question in the last post was A. a search and rescue transponder. If a launch boat were to become disabled with no means of communication or if the boat needs to be abandoned, activating a search and rescue transponder may be the only available option left for help to find someone missing. When the string is pulled and the cap is twisted, a signal for help is sent out in the form of 12 intense radar screen blips greatly increasing the odds for search and rescue to find someone in a timely manner. The radar blips become arcs as a radar gets closer to the transponder until the radar source gets within a nautical mile in which the arcs become full circles showing rescue crews that the transponder is nearby.)

Jeanne Muzi: Science, Service and Stewardship, August 10, 2015

Posted on August 11, 2015 by jeannemuzi

NOAA Teacher at Sea
Jeanne Muzi
Aboard NOAA Ship Thomas Jefferson
August 2 – 8, 2015

Mission: Hydrographic Survey
Geographical area of cruise: North Atlantic
Date: August 10, 2015

As I head home to New Jersey a few days ahead of schedule, I am reflecting on what I have learned aboard the Thomas Jefferson. From day one, I was asking questions and trying to understand the process of hydrographic surveying, the equipment used and the different roles of everyone involved in the process. I learned why hydrographic surveying is so important and why the mission of NOAA (Science, Service and Stewardship) is demonstrated in all the research and activities aboard the Thomas Jefferson.

The ocean covers 71 percent of the Earth’s surface and contains 97 percent of the planet’s water, yet more than 95 percent of the underwater world remains unexplored. NOAA protects, preserves, manages and enhances the resources found in 3.5 million square miles of coastal and deep ocean waters.

The oceans are our home. As active citizens, we must all become knowledgeable, involved stewards of our oceans.

Our ocean. Image courtesy of http://oceanservice.noaa.gov/news/june14/our-ocean.pdf

http://oceanservice.noaa.gov/news/june14/our-ocean.pdf

Science and Technology Log

As my Teacher at Sea experience ends, I wanted to make sure I shared some of the conversations I had with the officers charged with leading the missions of the Thomas Jefferson and the hydrographic work it is involved in.

The Thomas Jefferson: Home to an amazing crew!

It is my honor to introduce to you:

Captain Shepard Smith (CO)

CO Smith

Captain Smith grew up on the water in Maine. He always enjoyed reading maps and charts. He received a Bachelor’s of Science degree in mechanical engineering from Cornell University and earned a Master’s of Science degree from the University of New Hampshire Ocean Engineering (Mapping) Program. He has worked at NOAA in many different capacities.

He served aboard NOAA Ship Rainier, NOAA R/V Bay Hydrographer and the Thomas Jefferson. He was also the chief of Coast Survey’s Atlantic Hydrographic Branch in Norfolk, Virginia. Captain Smith also served as Senior Advisor to Dr. Kathryn Sullivan, NOAA Deputy Administrator and as Chief of Coast Survey’s Marine Chart Division. Captain Smith explained how he has been involved in integrating many new technological innovations designed to improve the efficiency of NOAA’s seafloor mapping efforts. It was through Captain Smith’s endeavors that Americans enjoy open access to all NOAA charts and maps.

CO Smith on the Bridge

He enjoys being the CO very much and feels the best part of his job is developing the next generation of leadership in NOAA. He feels it is very important to have that influence on junior officers. The worst part of his job is the separation from his family.

Captain Smith’s advice to young students is to pay attention to the world around you and how things work. Try to ask lots of questions. He said, “There are loads of opportunities to be the best at something and so many things to learn about. There are new fields, new ideas and new ways to see and understand things. Never limit yourself.”

Lieutenant Commander Olivia Hauser (XO)

XO LCDR Hauser

LCDR Hauser grew up in New Jersey and always loved learning about the ocean. As a little girl, she thought she would like to study Marine Science but wasn’t sure how. She grew up and earned her Bachelor’s of Arts in Biology from Franklin and Marshall College and her Master’s of Science in Biological Oceanography from the University of Delaware’s College of Marine Studies. Before coming to NOAA, LCDR Hauser spent time working for a mortgage company, which provided her with different kinds of skills. She soon started officer training for NOAA and got to apply the sonar knowledge she developed in graduate school to her NOAA work. She has served on the NOAA ships Rainier and Thomas Jefferson. She has built her strong background in hydrography with both land and sea assignments. She has been Field Operations Officer, Field Support Liaison and Executive Officer. She explained that in the field of hydrographic surveying, experience is key to improving skills and she is always trying to learn more and share her knowledge. As XO, she is the second highest-ranking officer on the ship.

LCDR Hauser feels the best part of her job is that it never gets boring. Everyday is different and there are always new things to see and learn.

XO supervises the arrival of the launch

LCDR Hauser also explained that the hardest part of the job is the transitions, that come pretty frequently. She said, “You may find yourself leaving a ship or coming to a new job. There are always new routines to learn and new people to get to know. With so many transitions, it is often hard to find and keep community, but on the positive side, the transitions keep you adaptable and resilient, which are important skills too.”

Her advice to young students is “Take opportunities! Explore things you never heard of. Don’t give up easily! Even the rough parts of the road can work for you. Every experience helps you grow! Keep asking questions…especially about how and why!”

Lieutenant Joseph Carrier (FOO)

LT Carrier

As a young boy, LT Carrier was the kind of kid who liked to take things apart and put them back together. He joined the Navy right out of high school. When he got out, he attended University of North Carolina at Wilmington and studied biology as an undergraduate and marine science in graduate school. He taught biology, oceanography, and earth science at a community college and worked at NOAA’s Atlantic Hydrographic Branch in Norfolk, VA before attending officer training. He served on other NOAA ships before coming to the Thomas Jefferson and has learned a lot about the technical aspects of hydrographic surveying, data collection and processing while onboard. He is currently the Field Operations Officer.

FOO on deck

LT Carrier feels the best part of his job is the great people he works with. He explained that on a ship you are part of a close family that works together, lives together and helps each other.

He said the hardest parts of the job are the long hours and missing his family very much.

His advice to younger students is don’t get discouraged easily. He explained, “If you are not good at something at first, try again. Know that each time you try something…you have an opportunity to get better at it. Everyone can overcome challenges by working hard and sticking with it!

Personal Log:

Quick painting fromTJ Bow

The experience of living and learning on the Thomas Jefferson will stay with me and impact my teaching as I continue to encourage kids to stay curious, ask questions and work hard!

I would like to thank everyone at NOAA’s Teacher at Sea program for enabling me to come on this adventure! My time as a TAS has provided me with authentic learning experiences and a new understanding of science and math in action. I would like to thank every person serving on the Thomas Jefferson who took the time to talk with me and shared his or her area of expertise. I appreciated everyone’s patience, kindness and friendly help as they welcomed me into their home. Every crewmember has given me stories, knowledge and information that I can now share with others.

Conserving our ocean and coasts. Image courtesy of http://oceanservice.noaa.gov/topics/

http://oceanservice.noaa.gov/topics/

In my last blog entry the Question of the Day and Picture of the Day was:

What is this and what do the letters mean?

What is this?
What do the letters mean?

These containers are life rafts. The letters “SOLAS” stand for “Safety of Life at Sea.”

The First SOLAS Treaty was issued in 1914, just two years after the Titanic disaster. The Treaty was put in place so countries all around the world would make ship safety a priority. The SOLAS Treaty ensures that ships have safety standards in construction, in equipment onboard and in their operation. Many countries have turned these international requirements into national laws. The first version of the treaty developed in response to the sinking of the Titanic. It stated the number of lifeboats and other emergency equipment that should be available on every ship, along with safety procedures, such as having drills and continuous radio watch. Newer versions of the SOLAS Treaty have been adopted and the guidelines are always being updated so people at sea remain safe. If there was an emergency on the Thomas Jefferson, the crew is prepared because they have practiced many different drills. If these lifeboats were needed they would be opened, inflated and used to bring everyone to safety.

Many thanks for reading about my Teacher at Sea Adventure!

Learning to be safe at sea!

Jeanne Muzi: STEM in Action, August 8, 2015

Posted on August 9, 2015 by jeannemuzi

NOAA Teacher at Sea
Jeanne Muzi
Aboard NOAA Ship Thomas Jefferson
August 2 – 8, 2015

Mission: Hydrographic Survey
Geographical area of cruise: North Atlantic
Date: August 8, 2015

Weather Data From the Bridge:
Temperature: 73°F (23°C) Fair
Humidity: 59%
Wind Speed: N 10 mph
Barometer: 29.94 in (1013.6 mb)
Dewpoint: 58°F (14°C)
Visibility: 10.00 mi

Science and Technology Log:

It is amazing that with hydrography, scientists can “look” into the ocean to “see” the sea floor by using sound.

All the data collected by the TJ, and other NOAA Hydro ships, is used to update nautical charts and develop hydrographic models.

This is important work because the charts are used to warn mariners of dangers to navigation, which can mean everything from rocks to ship wrecks. They also record tide or water level measurements to provide information about water depths. Surveys also help determine if the sea floor is made up of sand, mud or rock, which is important for the anchoring of boats, dredging, construction, and laying pipeline or cables. Hydrography also provides important information for fishery habitats.

The work being done on the Thomas Jefferson is a great example of STEM in action since hydrographic surveying combines science, lots of technology, the engineering of new devices and procedures, and the application of mathematical computations.

Here are two amazing survey images:

A crane discovered underwater

Image of the sunken ship, USS Monitor

A few of my students emailed me yesterday to ask how does the information gathered out on the launch become a chart. That’s a great question!

My XO (Executive Officer) LCDR Olivia Hauser provided me with a great explanation of how the data becomes a chart. She explained it this way:

It starts with deciding where to survey, and ends with an updated chart that is published and available for mariners to use. The decision where to survey is steered by a document called the National Hydrographic Survey Priorities document. It outlines where the top priorities to survey are based on the type of ship traffic that travels the area, the age of the survey in the area, how often the seafloor changes in the area, and specific requests from port authorities, the US Coast Guard, and other official maritime entities. Please see the following link for more information. http://www.nauticalcharts.noaa.gov/hsd/NHSP.htm

The operations branch of the Hydrographic Surveys Division of the Office of Coast Survey in NOAA (where Patrick works-see below) uses this document to decide where the ship will survey next. This branch then provides the ship with project instructions that identifies where the work will be done and divides the survey area into manageable chunks.

The data is raw when we first acquire it, and once it comes back to the ship, we need to apply some correctors to it, to improve the data quality.

Working in the survey room

One corrector we apply to the data is tide information. The water gets shallower and deeper depending on the stage of tide, and we need to make sure the depths on the chart are all relative to the same stage of tide.

Another corrector we apply to the data is vessel motion. When we acquire depth data with the sonar, the boat is moving with the waves, and the raw data looks like it has waves in the seafloor, too. We know that is not the case, so we take the motion data of the boat out of our depth data.

A third corrector we apply to the data is sound speed. The sonar finds the depth of the seafloor by sending a pulse of sound out and listening for its return, measuring the time it takes to complete that trip. We also measure the speed of sound through the water so we can calculate the depth (see the picture of ENS Gleichauf deploying the CTD to measure sound speed). Speed =Distance/Time. Speed of sound through typical seawater is 1500 meters per second. The speed of sound changes with water temperature and salinity (the saltiness of the water) .If we measure the time it takes for the sound to get to the seafloor and back, 1 second for example, and the sound speed is 1500 meters per second we know the seafloor is 750 meters away from the sonar. (the sound is traveling two ways).

Once all of the correctors are applied to the data, a digital terrain model (DTM) is created from the data to make a grid showing the depths and hazards in the area. A report is written about the survey, and it is submitted to the Atlantic Hydrographic Branch (Where Jeffrey works- See below). This branch reviews the data and makes sure it meets NOAA’s specifications for data quality. They also make a preliminary chart, picking the important depths and hazards that should be shown on the chart.

Once the data has been reviewed, it goes to the Marine Charting Division. This group takes the preliminary chart of the area surveyed, and adds it to the official chart that is being updated. These charts are then distributed to the public.

I had a chance to talk with some of the Survey Techs and project scientists who work on the TJ to find out more about their jobs.

Allison Stone

Allison Stone is the Hydro Senior Survey Technician (HSST). When Allison was 12 years old she clearly remembers her school’s Career Day, when lots of parents came in to talk about their jobs. She recalls there was one mom who had a sparkle in her eye when she talked about her job. She was an Oceanographer. That mom became her advisor when she attended the College of Charleston. Allison had an internship at the Atlantic Hydrography Branch in Norfolk and she first came to the TJ as a Student Scientist. She later became a full time technician. She enjoys her job because she gets the opportunity to observe the seafloor like no one has ever seen it before. She gets to solve problems and think outside the box. When she is going through raw data, she is able to make connections and interpret information. The work is interesting and challenging. Allison’s advice for young students is to keep being passionate about things you are interested in. Try to find out more and stay flexible. Try to volunteer as much as possible as you grow up so you can find out what you like to do and love to work on.

Jeffery Marshall

Jeffery Marshall was visiting the TJ for a project during my time aboard. Jeffery is a Physical Scientist with the Office of Coast Survey as a member of the Hydrographic Surveys Division, Atlantic Hydrographic Branch in Norfolk, Virginia. Jeffery grew up on the Jersey Shore and loved being out on the water, down at the beach and learning about the ocean. He loved surfing and was always wondering what the weather would be like so he could plan for the waves and the tides. So when he went to college, he studied meteorology. Following graduation, he taught middle school science and loved being a teacher. When he was ready for a change, he decided to attend graduate school and got his masters degree in Coastal Geology. He really enjoys having the opportunity to get out on the ships. His job is usually applying the processed data to charts, what he calls “Armchair Hydrography.” When he gets a chance to work on a NOAA ship mission, he has more opportunities to collect and analyze data. Jeff’s advice to young students is to read a lot and think about lots of different things, like how we use maps. He thinks everyone should take a look at old maps and charts, and think about how they were made. He encourages students to look for patterns in nature and to think about how rocks and sand change over time.

Patrick Keown

Patrick Keown is also a Physical Scientist. He was also working on a project on the TJ. Patrick works at the Operations Branch of the Hydrographics Survey Division in Silver Spring, Maryland. Patrick is usually working on plans for where surveying needs to take place. He started college as an Anthropology major but ended up in a Geographic Information Systems class and found that it came easily to him. Geographic Information Systems are designed to capture, store, manipulate, analyze, manage, and present all types of spatial or geographical data. He had an internship with the Army Corp of Engineers which provided some “on the job learning” of hydrography. When Patrick was young, he didn’t have the chance to travel much, so he spent a lot of time looking at maps and wondering, “What else is out there?” Now he loves to travel and likes to look at what he calls “Social Geography.” Patrick thinks the best part of his job is the chance to experience new things. He has had opportunities to try the latest technology and is inspired by all the new types of equipment, like drones and the Z boats. Patrick’s advice to young learners is “Never be afraid to explore! Never be afraid to ask questions! Most importantly, stay curious!!”

Cassie Bongiovanni

Cassie Bongiovanni is a GIS Specialist who works at The Center for Coastal and Ocean Mapping/Joint Hydrographic Center. The center is a partnership between the University of New Hampshire and NOAA, and it has two main objectives: to develop tools to advance ocean mapping and hydrography, and to train the next generation of hydrographers and ocean mappers. Cassie grew up in Texas and did not like science at all when she was young. She attended the University of Washington in Seattle and fell in love with the ocean. She received her Bachelors of Science in Geology with a focus in Oceanography. She is now working with NOAA’s Integrated Ocean and Coastal Mapping group on processing lidar and acoustic data for post Hurricane Sandy research efforts. Cassie explained that she loves her work because she loves to learn! She has lots of opportunities to ask questions and discover new things. The kid in her loves making maps and then coloring them with bright colors to create 3-D images of things like shipwrecks.

Personal Log:

The launch headed out again today to try to find a ship that sank earlier in the summer. Information was gathered and lines were surveyed, but so far no shipwreck was found. The day ended with a beautiful sunset.

Setting lines to survey

Looking out from the cabin of the launc

In my last blog entry the Question of the Day was:

How was the ocean floor mapped before sonar was invented?

Mariners have used many different methods to map the ocean floor to try to “see” what was under the water. For thousands of years a stick was used to see how deep the water was. Eventually, the stick was marked with measurements. Once ships started exploring the oceans, sticks were no longer good options for finding out the depth of water or if anything was under the water that could harm the ship. Sailors started tying a rope around a heavy rock and throwing it over board. In the 1400’s, mariners began using lead lines, which were marked lengths of rope attached to a lead weight. The lead line was good for measuring depth and providing information about the sea floor. The standard lead line was 20 fathoms long–120 feet–and the lead weighed 7 pounds. In the early 20^th century, the wire drag was invented. This meant two ships had a set system of wires hung between them and it enabled mariners to find hidden rocks, shipwrecks or other hazards hidden in the water.

Find out more about the history of navigation tools at http://www.vos.noaa.gov/MWL/aug_08/navigation_tools.shtml

In my last entry, The Picture of the Day showed Ensign Gleichauf lowering an instrument into the water. That is a CTD, which stands for conductivity, temperature, and depth. A CTD is made up of electronic instruments that measure these properties. The CTD detects how the conductivity and temperature of the water column changes as it goes deeper into the water. Conductivity is a measure of how well a solution conducts electricity. Conductivity is directly related to salinity, which is how salty the seawater is.

This is a CTD

Today’s Question of the Day and Picture of the Day: What is this and what do the letters mean?

What is this?
What do the letters mean?

Thanks for reading this entry!

Safety first!

Jeanne Muzi: Problem Solving on the Thomas Jefferson! August 5, 2015

Posted on August 6, 2015 by jeannemuzi

NOAA Teacher at Sea
Jeanne Muzi
Aboard NOAA Ship Thomas Jefferson|
August 2 – 13, 2015

Mission: Hydrographic Survey
Geographical area of cruise: North Atlantic
Date: August 5, 2015

Weather Data From the Bridge:
Temperature: 71° F (22° C)
Humidity: 84%
Wind Speed: S 5 mph
Barometer: 29.89 in (1012.1 mb)
Dewpoint: 66° F (19° C)
Visibility: 10.00 mi

Hello again!

Science and Technology Log:

One important thing that every single person has to face, no matter how old they are or what kind of job they have, is what to do when things go wrong. We are always happy when things are going smoothly—but what do you do when they don’t?

I found out about how important it is to be a thinker and problem solver on the Thomas Jefferson because we are experiencing engine problems. First the launches were not running. Then the TJ’s engines were having difficulties and it was discovered that we had water in our fuel. The engineers and officers all started to ask questions: Where is the water coming from? Is there a problem with the tanks? How are we going to fix this situation? What is the best solution right now? It was determined that we should sail into the Naval Base in Newport, Rhode Island so the fuel could be pumped out and the fuel tanks examined. This is a big job!

Lighthouse

Jamestown Bridge

We sailed into Newport on a beautiful sunny afternoon. I got to spend some time on the bridge and watched as Ensign Seberger and GVA (General Vessel Assistant) Holler steered our large ship around obstacles like lobster pots and small sailboats. AB (Ablebodied Seaman) Grains acted as the look out, peering through binoculars and calling out directions in degrees (instead of feet or yards), and port and starboard (instead of left and right). LTJG Forrest explained how to chart the route to Newport using a compass, slide rule and mathematical calculations. His computations were right on as he plotted the course of the Thomas Jefferson.

Charting TJ’s course to Newport

When we arrived at Newport, the tugboat, Jaguar, needed to help us dock and then the gangway was lifted into place using a crane.

The tugboat arrives to assist the TJ.

The tugboat Jaguar helping the TJ dock at Newport

The walkway is lowered from ship to shore.

The gangway is lowered from ship to shore.

Now we are waiting in Newport to see how the ship will be repaired, and how that will impact the surveying mission and the work of all the scientists on board. The fuel is currently being pumped out of the tanks so the engineering department can figure out what is going on.

Personal Log:

Some of my students have emailed to ask where am I sleeping. When you are aboard a ship, you sleep in a stateroom. I have the bottom bunk and my roommate has the top. We have storage lockers and shelves to hold our stuff. The bathroom (called the head) connects our stateroom with another room.

Bunks in our stateroom

Everyone eats in the Mess. You pick up your hot food on a plate in front of the galley and then sit down to eat at a table. Some of our meals so far have been omelets and cereal for breakfast, shrimp, rice and vegetables for lunch, and fish and potatoes for dinner. There is always a salad bar. Yogurt and ice cream are available, along with lots of different drinks.

Everyone eats meals together in the mess.

The passageways are pretty narrow around the ship and the stairs going from one deck to another are steep whether you are inside or outside.

Lots of ups and downs outside…

Lots of ups and downs inside…

Everything on a ship must be well-organized so equipment can be found quickly and easily.

Equipment must be organized so everyone can get what they need.

The view from the outside deck has been beautiful…

There is always something to see on the TJ

The last Question of the Day was: What do the letters XO mean on the hardhat of the person in the center of this picture?

XO Stands for Executive Officer

XO stands for Executive Officer. Our Executive Officer is Lieutenant Commander Olivia Hauser. She is the second in command on board.

The last Picture of the Day showed this image:

Whale caught with sonar

This image was captured with sonar and shows a whale swimming in the ocean. Amazing!

Today’s Question of the Day is:

Why is surveying the ocean floor so important?

Today’s Picture of the Day is:

What is this and what is it used for?

What is this?

Thanks for reading this entry.

Windy day on the deck of the TJ

Jeanne Muzi: Aboard the Thomas Jefferson! August 3, 2015

Posted on August 4, 2015 by jeannemuzi

NOAA Teacher at Sea
Jeanne Muzi
Aboard NOAA Ship Thomas Jefferson
August 2 – 13, 2015

Mission: Hydrographic Survey
Geographical area of cruise: North Atlantic
Date: August 3, 2015

Weather Data From the Bridge:

Temperature Fair 81°F (27°C)

Humidity	65%
Wind Speed	SW 12 mph
Barometer	29.87 in (1011.4 mb)
Dewpoint	68°F (20°C)
Visibility	10.00 mi
Heat Index	84°F (29°C)

Greetings from the Thomas Jefferson!

Science and Technology Log:

Now that I am onboard, I am trying to learn as much as possible. The TJ is a busy place and there are lots of jobs to be done. Basically there are separate groups working in different ways, like the Wardroom (which means all the officers on board), Engineering, Deck, Survey and Stewards, but everyone always comes together to work as a team.When one of the small launches returned to the ship late yesterday afternoon, everyone worked together to get it back on board safely. The launch had been surveying and now that data had to be processed in the survey dept.

One of the small launches returning

Lifting the launch

In the survey dept. there are different scientists working on different projects. This is a station for “Data Acquisition” so there are multiple computers and cameras sharing images, data and information from around the ship and from the sonars.

Information Acquisition Station

Survey Technician Stephanie Stabile created this “big picture” diagram, which explains how the different scanning tools communicate with each other to provide the most accurate scans of the ocean floor.

Diagram of TJ’s Hydro System

ST Stabile explains her diagram to me.

This picture shows how a survey ship uses its multi-beam sonar.

Survey ship with multi-beam Sonar

If you would like to learn more about sonar, check out this video:

http://oceanservice.noaa.gov/facts/sonar.html

I also had a chance to visit the bridge today as the anchor was lifted. I learned how orders are given clearly and information communicated accurately. Lieutenant Commander Hauser gave me a tour of the ship and answered many of my questions. She explained how the national flag is hoisted to the highest position when the ship gets underway.

Lieutenant Commander Hauser and Ensign Anderson with the American Flag.

Lieutenant Commander Hauser (right) and Ensign Anderson with the American Flag.

View from the bow of the Thomas Jefferson

Personal Log:

One of the most important things I learned about today was safety!

Think about why we have fire and evacuation drills at school…It is important to be prepared just in case something happens! It is exactly the same here on the Thomas Jefferson! I was part of a group that was trained on safety issues like fire, abandoning ship and what to do in any emergency. Ensign Perry walked us around the ship and showed us where life jackets, fire extinguishers, steel-toed shoes and hard hats are located. She also taught me how to get in and out of a survival suit. Survival suits (also called “Gumby suits”) are made of foam rubber and are designed to be watertight. They help protect against hypothermia and can keep a person alive and floating until rescuers can find them.

An example of a survival suit

For dinner, everyone on board came to a cookout on the deck near the bow of the ship! Delicious burgers, hotdogs, chicken, sausages and brisket were grilled up and enjoyed. What a great setting for some terrific food!

A cookout on the Thomas Jefferson

In my first blog entry the Question of the Day was:

Think about what you know about President Thomas Jefferson…What does he have to do with the Atlantic Ocean?

Thomas Jefferson

Here is some interesting information about Thomas Jefferson and the ocean:

As most people know, Thomas Jefferson was a writer, an artist, an architect, a statesmen and a lawyer. He was also one of our most scientific presidents. In 1807, President Jefferson established the Survey of the Coast to produce the nautical charts necessary for maritime safety, defense, and the establishment of national boundaries. The United States Coast and Geodetic Survey is the oldest scientific organization in the U.S. Other agencies that became part of NOAA in 1970 include the Weather Bureau, formed in 1870, and the Bureau of Commercial Fisheries, formed in 1871. Much of America’s scientific heritage resides in these agencies. They brought their cultures of scientific accuracy and precision, stewardship of resources, and protection of life and property to NOAA.

The first Picture of the Day shows a side sonar “fish”. Here is some information about side scan sonars.

Side Scan Sonar Information

Go to this website to find out more!

http://oceanservice.noaa.gov/education/seafloor-mapping/how_sidescansonar.html

Today’s Question of the Day is:

What do the letters XO mean on the hardhat of the person in the center of this picture?

XO?

Today’s Picture of the Day is:

Look carefully…What do you think?

What do you see in the scan?

Learning more each day! photo credit: Dan Connors

Thanks for reading this blog entry!

Emily Whalen: Station 381–Cashes Ledge, May 1, 2015

Posted on May 4, 2015 by Emily Whalen

NOAA Teacher at Sea
Emily Whalen
Aboard NOAA Ship Henry B. Bigelow
April 27 – May 10, 2015

Mission: Spring Bottom Trawl Survey, Leg IV
Geographical Area of Cruise: Gulf of Maine
Date: May 1, 2015

Weather Data from the Bridge:
Winds: Light and variable
Seas: 1-2ft
Air Temperature: 6.2^○C
Water Temperature: 5.8^○C

Science and Technology Log:

Earlier today I had planned to write about all of the safety features on board the Bigelow and explain how safe they make me feel while I am on board. However, that was before our first sampling station turned out to be a monster haul! For most stations I have done so far, it takes about an hour from the time that the net comes back on board to the time that we are cleaning up the wetlab. At station 381, it took us one minute shy of three hours! So explaining the EEBD and the EPIRB will have to wait so that I can describe the awesome sampling we did at station 381, Cashes Ledge.

This is a screen that shows the boats track around the Gulf of Maine. The colored lines represent the sea floor as determined by the Olex multibeam. This information will be stored year after year until we have a complete picture of the sea floor in this area!

Before I get to describing the actual catch, I want to give you an idea of all of the work that has to be done in the acoustics lab and on the bridge long before the net even gets into the water.

The bridge is the highest enclosed deck on the boat, and it is where the officers work to navigate the ship. To this end, it is full of nautical charts, screens that give information about the ship’s location and speed, the engine, generators, other ships, radios for communication, weather data and other technical equipment. After arriving at the latitude and longitude of each sampling station, the officer’s attention turns to the screen that displays information from the Olex Realtime Bathymetry Program, which collects data using a ME70 multibeam sonar device attached to bottom of the hull of the ship .

Traditionally, one of the biggest challenges in trawling has been getting the net caught on the bottom of the ocean. This is often called getting ‘hung’ and it can happen when the net snags on a big rock, sunken debris, or anything else resting on the sea floor. The consequences can range from losing a few minutes time working the net free, to tearing or even losing the net. The Olex data is extremely useful because it can essentially paint a picture of the sea floor to ensure that the net doesn’t encounter any obstacles. Upon arrival at a site, the boat will cruise looking for a clear path that is about a mile long and 300 yards wide. Only after finding a suitable spot will the net go into the water.

Check out this view of the seafloor. On the upper half of the screen, there is a dark blue channel that goes between two brightly colored ridges. That's where we dragged the net and caught all of the fish!

Check out this view of the seafloor. On the upper half of the screen, there is a dark blue channel that goes between two brightly colored ridges. We trawled right between the ridges and caught a lot of really big fish!

The ME70 Multibeam uses sound waves to determine the depth of the ocean at specific points. It is similar to a simpler, single stream sonar in that it shoots a wave of sound down to the seafloor, waits for it to bounce back up to the ship and then calculates the distance the wave traveled based on the time and the speed of sound through the water, which depends on temperature. The advantage to using the multibeam is that it shoots out 200 beams of sound at once instead of just one. This means that with each ‘ping’, or burst of sound energy, we know the depth at many points under the ship instead of just one. Considering that the multibeam pings at a rate of 2 Hertz to 0.5 Herts, which is once every 0.5 seconds to 2 seconds, that’s a lot of information about the sea floor contour!

This is what the nautical chart for Cashes Ledge looks like. The numbers represent depth in fathoms. The light blue lines are contour lines. The places where they are close together represent steep cliffs. The red line represents the Bigelow’s track. You can see where we trawled as a short jag between the L and the E in the word Ledge

The stations that we sample are randomly selected by a computer program that was written by one of the scientists in the Northeast Fisheries Science Center, who happens to be on board this trip. Just by chance, station number 381 was on Cashes Ledge, which is an underwater geographical feature that includes jagged cliffs and underwater mountains. The area has been fished very little because all of the bottom features present many hazards for trawl nets. In fact, it is currently a protected area, which means the commercial fishing isn’t allowed there. As a research vessel, we have permission to sample there because we are working to collect data that will provide useful information for stock assessments.

My watch came on duty at noon, at which time the Bigelow was scouting out the bottom and looking for a spot to sample within 1 nautical mile of the latitude and longitude of station 381. Shortly before 1pm, the CTD dropped and then the net went in the water. By 1:30, the net was coming back on board the ship, and there was a buzz going around about how big the catch was predicted to be. As it turns out, the catch was huge! Once on board, the net empties into the checker, which is usually plenty big enough to hold everything. This time though, it was overflowing with big, beautiful cod, pollock and haddock. You can see that one of the deck crew is using a shovel to fill the orange baskets with fish so that they can be taken into the lab and sorted!

You can see the crew working to handling all of the fish we caught at Cashes Ledge. How many different kinds of fish can you see? Photo by fellow volunteer Joe Warren

At this point, I was standing at the conveyor belt, grabbing slippery fish as quickly as I could and sorting them into baskets. Big haddock, little haddock, big cod, little cod, pollock, pollock, pollock. As fast as I could sort, the fish kept coming! Every basket in the lab was full and everyone was working at top speed to process fish so that we could empty the baskets and fill them up with more fish! One of the things that was interesting to notice was the variation within each species. When you see pictures of fish, or just a few fish at a time, they don’t look that different. But looking at so many all at once, I really saw how some have brighter colors, or fatter bodies or bigger spots. But only for a moment, because the fish just kept coming and coming and coming!

Finally, the fish were sorted and I headed to my station, where TK, the cutter that I have been working with, had already started processing some of the huge pollock that we had caught. I helped him maneuver them up onto the lengthing board so that he could measure them and take samples, and we fell into a fish-measuring groove that lasted for two hours. Grab a fish, take the length, print a label and put it on an envelope, slip the otolith into the envelope, examine the stomach contents, repeat.

Cod, pollock and haddock in baskets waiting to get counted and measured. Photo by Watch Chief Adam Poquette.

Some of you have asked about the fish that we have seen and so here is a list of the species that we saw at just this one site:

Pollock
Haddock
Atlantic wolffish
Cod
Goosefish
Herring
Mackerel
Alewife
Acadian redfish
Alligator fish
White hake
Red hake
American plaice
Little skate
American lobster
Sea raven
Thorny skate
Red deepsea crab

: Atlantic Herring

: Goosefish. Does this remind you of anyone you know?

: Mackerel. Possibly the best looking fish in the sea.

I think it’s human nature to try to draw conclusions about what we see and do. If all we knew about the state of our fish populations was based on the data from this one catch, then we might conclude that there are tons of healthy fish stocks in the sea. However, I know that this is just one small data point in a literal sea of data points and it cannot be considered independently of the others. Just because this is data that I was able to see, touch and smell doesn’t give it any more validity than other data that I can only see as a point on a map or numbers on a screen. Eventually, every measurement and sample will be compiled into reports, and it’s that big picture over a long period of time that will really allow give us a better understanding of the state of affairs in the ocean.

Sunset from the deck of the Henry B. Bigelow

Personal Log

Lunges are a bit more challenging on the rocking deck of a ship!

It seems like time is passing faster and faster on board the Bigelow. I have been getting up each morning and doing a Hero’s Journey workout up on the flying bridge. One of my shipmates let me borrow a book that is about all of the people who have died trying to climb Mount Washington. Today I did laundry, and to quote Olaf, putting on my warm and clean sweatshirt fresh out of the dryer was like a warm hug! I am getting to know the crew and learning how they all ended up here, working on a NOAA ship. It’s tough to believe but a week from today, I will be wrapping up and getting ready to go back to school!

Theresa Paulsen: Preparing to Explore the Ocean Floor, March 9, 2015

Posted on March 9, 2015 by tpaulsen2015

NOAA Teacher at Sea
Theresa Paulsen
Preparing to Board NOAA Ship Okeanos Explorer
March 16 – April 3, 2015

Mission: Caribbean Exploration (Mapping)
Geographical Area of Cruise: Caribbean Trenches and Seamounts
Date: March 9, 2015

Personal Log

If you could have any super power imaginable, what would it be? Growing up, my son asked me this question numerous times as we walked our dog. While he pondered the advantages of flight, invisibility, or spontaneous combustion, my answer was always the same. I want Aquaman’s powers (but a better looking outfit). I want to swim underwater without the need for dive gear, seahorses, or gillyweed, to see what few others have seen. I want to communicate with whales and dolphins to find out what their large brains can teach us about our planet. While I may not be able to attain superhero status, I can join some real-world adventurers on an amazing vessel equipped to conduct research that will help realize my dream of seeing the unseen depths of the ocean.

Hello, from Northern Wisconsin! My name is Theresa Paulsen. I am a high school science teacher in Ashland, WI. I have been teaching for 17 years while living along the south shore of Lake Superior with my husband and our two children.

My husband, Bryan

Our children, Ben and Laura, paddling the sea caves in the Apostle Islands, N.L.

The pristine lake and the rich forests around the region provide the resources that sustain our local communities. As we work to promote local stewardship in the classroom, we must recognize that the health and welfare of the resources we treasure are connected to the greater global environment which is heavily influenced by the processes that occur in our oceans. The geological processes occurring near our research zone are fascinating. The North American plate slides passed the Caribbean plate creating the Puerto Rico trench, the deepest part of the Atlantic Ocean.

Bathymetry of the northeast corner of the Caribbean plate. Image courtesy of USGS.

Maps generated by the vessel’s state-of-the-art multibeam sonar on our mission will help geologists learn more about the tectonic activity and potential seismic hazards in the area. (Let’s hope the only rumblings I feel are those caused by the typical mild sea-sickness!) The maps will also be used by marine biologists and resource managers to investigate and assess unique habitat zones. Learn more the mission goals here.

My students and I have been checking in on the vessels live video feed periodically as the ship sails from Rhode Island to Puerto Rico, mapping along the way. I will join the crew in Puerto Rico on the 14th to begin training before the vessel sets sail for the second leg of the mission on the 16th. Throughout our journey, scientists will use the maps we generate to determine areas that require further investigation with the vessel’s remotely operated vehicle (ROV) on the third leg of the mission.

NOAA Ship Okeanos Explorer with camera sled, Seirios, deployed and below that, IFE’s Little Hercules—a science-class ROV. Credit: Randy Canfield and NOAA.

My goal is to learn as much as I can on this expedition! There is no better way to motivate students to become life-long learners and scientific thinkers than to show them how exciting real research can be. Through the NOAA Teacher at Sea program, my students and I will have the rare opportunity to learn first-hand about the science and technology oceanographers use to study fascinating places in the ocean. I will return to the classroom in April, equipped with lesson ideas and answers to questions about ocean research and careers! Thank you for following me on my journey. Please post questions or comments. I will do my best to address them in future posts (although communication aboard the vessel can be tenuous, I am told). Here is my first question for you:

NOAA Teacher at Sea Blog

Tag Archives: seafloor mapping

Spencer Cody: Killing the Dots, June 13, 2016

Jeanne Muzi: Science, Service and Stewardship, August 10, 2015

Jeanne Muzi: STEM in Action, August 8, 2015

Jeanne Muzi: Problem Solving on the Thomas Jefferson! August 5, 2015

Jeanne Muzi: Aboard the Thomas Jefferson! August 3, 2015

Emily Whalen: Station 381–Cashes Ledge, May 1, 2015

Theresa Paulsen: Preparing to Explore the Ocean Floor, March 9, 2015