Journal of the North American Benthological Society

Published by: The Society for Freshwater Science

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Journal of the North American Benthological Society 27(4):892-905. 2008
doi: http://dx.doi.org/10.1899/07-153.1

Effects of regionalization decisions on an O/E index for the US national assessment
No Access

Lester L. Yuan1a, Charles P. Hawkins2b, John Van Sickle3c

National Center for Environmental Assessment, US Environmental Protection Agency, 1200 Pennsylvania Ave, NW, 8623P, Washington, DC 20460 USA

Western Center for Monitoring and Assessment of Freshwater Ecosystems, Department of Watershed Sciences, and the Ecology Center, Utah State University, Logan, Utah 84322-5210 USA

National Health and Environmental Effects Laboratory, US Environmental Protection Agency, 200 SW 35 St., Corvallis, Oregon 97333 USA

Abstract

We examined the effects of different regionalization schemes on the performance of River InVertebrate Prediction and Classification System (RIVPACS)-type predictive models in assessing the biological conditions of streams of the US for the National Wadeable Streams Assessment (WSA). Three regionalization schemes were considered: a single national predictive model (MOD1), separate predictive models for each of the 9 WSA aggregated Omernik level III ecoregions (MOD9), and 3 predictive models roughly corresponding to the western US, the Appalachian Mountains, and the Central and Coastal Plains (MOD3). The goal of the WSA was to assess stream condition at the national scale and at the scale of WSA aggregated ecoregions, so we compared the performance of the ratio of the observed number of taxa to the expected number of taxa (O/E) index estimated using different regionalization schemes at both of these spatial scales. We assessed model performance with a randomized resampling procedure, in which we set aside 10% of the reference sites, calibrated the model with the remaining sites, and applied the model to the set-aside sites. Performance statistics for the set-aside reference sites were accumulated over 10 iterations. When summarized at the national scale, mean model predictions of O/E for set-aside reference sites from the 3 different regionalization schemes were all reasonably close to 1. When summarized by the 9 aggregated ecoregions, MOD1 and MOD3 predictions of O/E differed systematically from 1 in certain aggregated ecoregions. Over all 9 ecoregions, the magnitude of these differences was significantly greater than observed with MOD9 predictions. Results from our analysis suggest that O/E values at test sites should be interpreted with respect to mean and SD of O/E of reference sites from the same region to minimize the effects of systematic biases in the predictions. RIVPACS-type predictive models also should be calibrated at a spatial scale similar to the scale at which summary statistics are reported.

Received: November 21, 2007; Accepted: July 25, 2008


Literature Cited

Agresti, A. 1990. Categorical data analysis. 2nd edition. John Wiley and Sons, New York.
Australia State of the Environment Committee. 2001. Australia State of the Environment 2001. Independent report to the Commonwealth Minister for the Environment and Heritage. CSIRO Publishing on behalf of the Department of the Environment and Heritage, Collingwood, Victoria, Australia. (Available from: http://www.environment.gov.au/soe/2001/index.html).
Barry, S. and J. Elith. 2006. Error and uncertainty in habitat models. Journal of Applied Ecology 43:413423.. CrossRef
Cade, B. S., B. R. Noon, and C. H. Flather. 2005. Quantile regression reveals hidden bias and uncertainty in habitat models. Ecology 86:786800.. CrossRef
Carlisle, D. M. and C. P. Hawkins. 2008. Land use and the structure of western US stream invertebrate assemblages: predictive models and ecological traits. Journal of the North American Benthological Society 27:986999.. BioOne
Carlisle, D. M., C. P. Hawkins, M. R. Meador, M. Potapova, and J. Falcone. 2008. Biological assessments of Appalachian streams derived from predictive models for fish, macroinvertebrate, and diatom assemblages. Journal of the North American Benthological Society 27:1637.. BioOne
Clarke, R. T., J. F. Wright, and M. T. Furse. 2003. RIVPACS models for predicting the expected macroinvertebrate fauna and assessing the ecological quality of rivers. Ecological Modelling 160:219233.. CrossRef
Daly, C., G. H. Taylor, W. P. Gibson, T. W. Parzybok, G. L. Johnson, and P. Pasteris. 2001. High-quality spatial climate data sets for the United States and beyond. Transactions of the American Society of Agricultural Engineers 43:19571962.. CrossRef
Davies, P. E. 2000. Development of a national river bioassessment system (AUSRIVAS) for Australia. Pages. 113124. in J. F. Wright, D. W. Sutcliffe, M. T. Furse (editors). Assessing the biological quality of fresh waters: RIVPACS and other techniques. Freshwater Biological Association, Ambleside, UK.
Death, R. G. and M. J. Winterbourne. 1994. Environmental stability and community persistence: a multivariate perspective. Journal of the North American Benthological Society 13:125139.. CrossRef
Fielding, A. H. and J. F. Bell. 1997. A review of methods for the assessment of prediction errors in conservation presence/absence models. Environmental Conservation 24:3849.. CrossRef
Hargett, E., J. ZumBerge, C. P. Hawkins, and J. Olson. 2007. Development of a RIVPACS-type predictive model for bioassessment of wadeable streams in Wyoming. Ecological Indicators 7:807826.. CrossRef
Harrell, F. E. 2001. Regression modeling strategies. Springer-Verlag, New York.
Hawkins, C. P. 2006. Quantifying biological integrity by taxonomic completeness: evaluation of a potential indicator for use in regional- and global-scale assessments. Ecological Applications 16:12511266..
Hawkins, C. P., R. H. Norris, J. Gerritsen, R. M. Hughes, S. K. Jackson, R. K. Johnson, and R. J. Stevenson. 2000a. Evaluation of the use of landscape classification for the prediction of freshwater biota: synthesis and recommendations. Journal of the North American Benthological Society 19:541556.. CrossRef
Hawkins, C. P., R. H. Norris, J. N. Hogue, and J. W. Feminella. 2000b. Development and evaluation of predictive models for measuring the biological integrity of streams. Ecological Applications 10:14561477.. CrossRef
Hemsley-Flint, B. 2000. Classification of the biological quality of rivers in England and Wales. Pages. 5570. in J. F. Wright, D. W. Sutcliffe, M. T. Furse (editors). Assessing the biological quality of fresh waters: RIVPACS and other techniques. Freshwater Biological Association, Ambleside, UK.
Herlihy, A. T., S. G. Paulsen, J. Van Sickle, J. L. Stoddard, C. P. Hawkins, and L. L. Yuan. 2008. Striving for consistency in a national assessment: the challenges of applying a reference condition approach at a continental scale. Journal of the North American Benthological Society 27:860877.. BioOne
Hughes, R. M. and D. V. Peck. 2008. Acquiring data for large aquatic resource surveys: the art of compromise among science, logistics, and reality. Journal of the North American Benthological Society 27:837859.. BioOne
Kansas DWP (Kansas Department of Wildlife and Parks). 2002. Measuring the status and trends of biological resources in Kansas using Environmental Monitoring and Assessment Program probability based sampling design (R-EMAP). Kansas Department of Wildlife and Parks, Pratt, Kansas. (Available from: http://www.epa.gov/emap/remap/html/docs/kansas.html).
Moss, D. M., M. T. Furse, J. F. Wright, and P. D. Armitage. 1987. The prediction of the macro-invertebrate fauna of unpolluted running-water sites in Great Britain using environmental data. Freshwater Biology 17:4152.. CrossRef
Moulton, S. R., J. G. Kennen, R. M. Goldstein, and J. A. Hambrook. 2002. Revised protocols for sampling algal, invertebrate, and fish communities as part of the National Water-Quality Assessment Program. U.S. Geological Survey Open File Report 02–150. US Geological Survey, Reston, Virginia.
New Mexico Environment Department. 2004. Water quality survey summary for the Lower Rio Chama watershed. Surface Water Quality Bureau, New Mexico Environment Department, Santa Fe, New Mexico. (Available from: http://www.nmenv.state.nm.us/swqb/Surveys/LowerChama1999.pdf ).
Ode, P. R., C. P. Hawkins, and R. D. Mazor. 2008. Comparability of biological assessments derived from predictive models and multimetric indices of increasing geographic scope. Journal of the North American Benthological Society 27:967985.. BioOne
Olsen, A. and D. Peck. 2008. Survey design and extent estimates for the Wadeable Streams Assessment. Journal of the North American Benthological Society 27:822836.. BioOne
Omernik, J. M. 1987. Ecoregions of the conterminous United States. Annals of the Association of American Geographers 77:118125.. CrossRef
Ostermiller, J. D. and C. P. Hawkins. 2004. Effects of sampling error on bioassessments of stream ecosystems: applications to RIVPACS-type models. Journal of the North American Benthological Society 23:363382.. BioOne
SAS Institute. 2004. SAS OnlineDoc 9.1.3. SAS Institute, Cary, North Carolina. (Available from: http://support.sas.com/onlinedoc/913/docMainpage.jsp).
Simon, T. P. and J. Lyons. 1995. Application of the Index of Biotic Integrity to evaluate water resource integrity in freshwater ecosystems. Pages. 245262. in W. S. Davis, T. P. Simon (editors). Biological assessment and criteria: tools for water resource planning and decision making. CRC Press, Boca Raton, Florida.
Simpson, J. C. and R. H. Norris. 2000. Biological assessment of river quality: development of AUSRIVAS models and outputs. Pages. 125142. in J. F. Wright, D. W. Sutcliffe, M. T. Furse (editors). Assessing the biological quality of fresh waters: RIVPACS and other techniques. Freshwater Biological Association, Ambleside, UK.
Stoddard, J. L., A. T. Herlihy, B. H. Hill, R. M. Hughes, P. R. Kaufmann, D. J. Klemm, J. M. Lazorchak, F. H. McCormick, D. V. Peck, S. G. Paulsen, A. R. Olsen, D. P. Larsen, J. Van Sickle, and T. R. Whittier. 2006a. Mid-Atlantic Integrated Assessment (MAIA) state of the flowing waters report. EPA/620/R-06/001. Office of Research and Development, US Environmental Protection Agency, Washington, DC.
Stoddard, J. L., D. V. Peck, A. R. Olsen, D. P. Larsen, J. Van Sickle, C. P. Hawkins, R. M. Hughes, T. R. Whittier, G. Lomnicky, A. T. Herlihy, P. R. Kaufmann, S. A. Peterson, P. L. Ringold, S. G. Paulsen, and R. Blair. 2006b. Environmental Monitoring and Assessment (EMAP) western streams and rivers statistical summary. EPA/620/R-05/006. Office of Research and Development, US Environmental Protection Agency, Washington, DC.
ter Braak, C. J F. and I. C. Prentice. 1988. A theory of gradient analysis. Advances in Ecological Research 18:271317.. CrossRef
USEPA (US Environmental Protection Agency). 2001. New England Wadeable Streams (NEWS). Region 1, US Environmental Protection Agency, Boston, Massachusetts. (Available from: http://epa.gov/Region1/lab/reportsdocuments/wadeable/index.html).
USEPA (US Environmental Protection Agency). 2004. Wadeable Streams Assessment field operations manual. EPA841-B-04–004. Office of Water and Office of Research and Development, US Environmental Protection Agency, Washington, DC.
USEPA (US Environmental Protection Agency). 2006. Wadeable Streams Assessment: a collaborative survey of the nation's streams. EPA 841-B-06–002. Office of Research and Development and Office of Water, US Environmental Protection Agency, Washington, DC.
USGS (US Geological Survey). 2005. Design of the National Water-Quality Assessment Program: occurrence and distribution of water-quality conditions. U.S. Geological Survey Circular 1112. US Geological Survey, Reston, Virginia.
Van Sickle, J., C. P. Hawkins, and D. P. Larsen. 2005. A null model for the expected macroinvertebrate assemblage in streams. Journal of the North American Benthological Society 24:178191.. BioOne
Van Sickle, J., D. P. Larsen, and C. P. Hawkins. 2007. Exclusion of rare taxa affects performance of the O/E index in bioassessments. Journal of the North American Benthological Society 26:319331.. BioOne
Van Sickle, J. and S. G. Paulsen. 2008. Assessing the attributable risks, relative risks, and regional extents of aquatic stressors. Journal of the North American Benthological Society 27:920931.. BioOne
Yuan, L. L. 2006. Theoretical predictions of observed to expected ratios in RIVPACS-type predictive model assessments of stream biological conditions. Journal of the North American Benthological Society 25:841850.. BioOne

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