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1
Structures of Soluble Amyloid Oligomers From Computer Simulations

) and glutamic acid (E)] and two hydrophobic side-chains [phenylalanine (F)]. On the basis of biophysi- cal data and the number of phenylalanine�phenylalanine side chain contacts. Two side chains k and l, of van der Waals in Figure 2(F), the early steps are dominated by ...

E-print Network

2
CASE FILE - NASA Technical Report Server (NTRS)

the acrylic acid polymers or copolymers esterified with fluorinated alcohols, .... with perfluorinated side chains introduced by esterification; the ...

NASA Website

3
Early Metabolic Pathways - Astrobiology - NASA

Aug 11, 2011 ... Computer graphics representation of interactions between the guanosine triphosphate (on the right side) and amino acids side chains of a ...

NASA Website

4
Influence of water solubility, side chain degradability and side chain configuration on the degradation of phthalic acid esters under methanogenic conditions.
1996-01-01

Water solubility and degradability of side chains estrifying phthalic acid are factors possible to influence the degradation of phthalic acid esters (PAEs). To investigate the importance of these factors, degradation of butyl 2-ethylhexyl phthalate (BEHP)...

National Technical Information Service (NTIS)

5
The impact of hydration water on the dynamics of side chains of hydrophobic peptides: From dry powder to highly concentrated solutions
2009-06-01

Elastic and quasielastic neutron scattering experiments are used to investigate the dynamics of side chains in proteins, using hydrophobic peptides, from dry and hydrated powders up to solutions, as models. The changes of the internal dynamics of a prototypical hydrophobic amino acid, N-acetyl-leucine-methylamide, and alanine amino ...

NASA Astrophysics Data System (ADS)

6
DNA-Templated Polymerization of Side-Chain-Functionalized Peptide Nucleic Acid Aldehydes
2008-03-15

The DNA-templated polymerization of synthetic building blocks provides a potential route to the laboratory evolution of sequence-defined polymers with structures and properties not necessarily limited to those of natural biopolymers. We previously reported the efficient and sequence-specific DNA-templated polymerization of peptide nucleic acid (PNA) aldehydes. Here, we report ...

PubMed Central

7
Penicillin and Cephalosporin Conjugates with Lipidic Amino Acids and Oligomers.
1992-01-01

Fatty amino acids are alpha-amino acids with a linear or branched alkyl side chain. Of interest is the use of fatty amino acids monomers and oligomers as conjugating units for biologically active compounds. The conjugates formed would be expected to posse...

National Technical Information Service (NTIS)

8
Project: Origins of Functional Proteins and the Early Evolution of ...

It involves five single-point mutations that allow amino-acid side chains to form three favorable hydrogen bonds with GTP and prevent water from penetrating ...

NASA Website

9
Interactions between amino acid side chains in cylindrical hydrophobic nanopores with

buckminsterfullerene affects surrounding water structure. J Phys Chem B 112:2981�2990. 23. Hummer G, Rasaiah JC

E-print Network

10
Center for Cancer Research - Staff Pages

Groups on the side chain of T252 in Escherichia coli leucyl-tRNA synthetase are important for discrimination of amino acids and cell viability. Biochem. Biophys. Res. Commun.

Cancer.gov

11
Determination of Aliphatic Side-Chain Conformation Using Cross-Correlated Relaxation: Application to an Extraordinarily Stable

such as chlorogenic acid in coffee, psoralens in celery, or indole carbinol in broccoli turned out to be important

E-print Network

12
Functionalized Analogues of an Unnatural Amino Acid that Mimics a Tripeptide ?-Strand
2008-10-21

This paper introduces polar and hydrophobic variants of the unnatural amino acid Hao, which mimics the hydrogen-bonding functionality of one edge of a ?-strand. In these variants, the methyl side chain of Hao is replaced with acidic, basic, and hydrophobic groups. These modifications can impart improved solubility ...

PubMed Central

13
Suppression of Side Chain Crystallization and Transformation ...
1988-12-21

... Title : Suppression of Side Chain Crystallization and Transformation of Monotropic Mesophases into Enantiotropic Mesophases by ...

DTIC Science & Technology

14
Effect of Steric Constraint at the ?-Backbone Position on the Conformations and Hybridization Properties of PNAs
2011-05-25

Conformationally preorganized peptide nucleic acids (PNAs) have been synthesized through backbone modifications at the ?-position, where R = alanine, valine, isoleucine, and phenylalanine side chains. The effects of these side-chains on the conformations and hybridization properties of PNAs were determined using a ...

PubMed Central

15
Extension of microwave-accelerated residue-specific acid cleavage to proteins with carbohydrate side chains and disulfide linkages
2008-12-01

This laboratory has introduced a chemical method for residue-specific protein cleavage and has provided a preliminary assessment of the suitability of microwave-accelerated acid cleavage as a proteomic tool. This report is a continuing assessment of the fate of common protein modifications in microwave-accelerated acid cleavage. We have examined the ...

NASA Astrophysics Data System (ADS)

16
Immunogenicity Review - Darbepoetin, Aranesp, Amgen, Inc.

... 5 amino acid changes have been inserted into the native molecule, encoding 5 N-linked carbohydrate side chains rather than the 3 N-linked carbohydrate chains ...

Center for Drug Evaluation (CDER)

17
Distribution and Composition of Sialic Acids and Glycoproteins.
1964-01-01

A direct demonstration was made for the first time that the principal type of linkage between carbohydrate side chains of bovine submaxillary mucin and the main peptide chain are glycosidic linkages between N-acetyl galactosamine and the hydroxyl groups o...

National Technical Information Service (NTIS)

18
The Influence of the Polymer Backbone Flexibility on the ...
1989-05-02

... backbones enhance the decoupling of the motions of the side chain and main chain and, therefore, increase the rate of side-chain crystallization. ...

DTIC Science & Technology

19
Molecular design of anti-MRSA agents based on the anacardic acid scaffold.
2007-06-14

A series of anacardic acid analogues possessing different side chains viz. phenolic, branched, and alicyclic were synthesized and their antibacterial activity tested against methicillin-resistant Staphylococcus aureus (MRSA). The maximum activity against this bacterium occurred with the branched side-chain ...

PubMed

20
Waterproofing the Heme Pocket ROLE OF PROXIMAL AMINO ACID SIDE CHAINS IN PREVENTING HEMIN LOSS FROM MYOGLOBIN*

Waterproofing the Heme Pocket ROLE OF PROXIMAL AMINO ACID SIDE CHAINS IN PREVENTING HEMIN LOSS FROM Leu89 , Ile99 , and Leu104 "waterproof" the heme pocket by forming a barrier to solvent penetration.7 0.08 H93G 660 140 Waterproofing the Heme9094 #12;sive 4-fold decrease in O2 affinity as the size

E-print Network

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21
ISOLATION AND STRUCTURAL IDENTIFICATION OF COMPLEX FERULOYLATED HETEROXYLAN SIDE-CHAINS FROM MAIZE BRAN

Three new complex heteroxylan side-chains acylated with ferulate and one arabinosyl ester of p-coumaric acid have been isolated from maize bran insoluble fibre after acidic hydrolysis and fractionation by gel permeation chromatography and semi-preparative RP-HPLC. The complete structural elucidation...

Technology Transfer Automated Retrieval System (TEKTRAN)

22
Evaluation of lipoxygenase inhibitory activity of anacardic acids.

6-Alkylsalicylic acids inhibit the linoleic acid peroxidation catalyzed by soybean lipoxygenase-1 (EC 1.13.11.12, type 1) competitively and without pro-oxidant effects. This activity is largely dependent on the nature of their alkyl side chains. Inhibitory activities of anacardic acids, viz. ...

PubMed

23
[(Aminomethyl)aryloxy]acetic acid esters. A new class of high-ceiling diuretics. 2. Modifications of the oxyacetic side chain.
1984-12-01

The discovery of high-ceiling natriuretic activity from a series of aminomethyl derivatives of ethyl [2,3-dichloro-4-(4-hydroxybenzoyl)phenoxy]acetate prompted our continued investigation of this new class of (aryloxy)acetic acid diuretics. Systematic alteration of the oxyacetic side chain has shown that the carboxylic ...

PubMed

24
Partial molar volumes of proteins: amino acid side-chain contributions derived from the partial molar volumes of some tripeptides over the temperature range 10-90 degrees C.
1999-11-15

The partial molar volumes of tripeptides of sequence glycyl-X-glycine, where X is one of the amino acids alanine, leucine, threonine, glutamine, phenylalanine, histidine, cysteine, proline, glutamic acid, and arginine, have been determined in aqueous solution over the temperature range 10-90 degrees C using differential scanning densitometry . These data, ...

PubMed

25
Orientational Changes of Side Chain Nonlinear Chromophore in Polyimide Langmuir-Blodgett Films
1998-12-01

The orientational changes in optical nonlinear active side chains of polyamic acid alkyl amine salt monolayers before and after the imidization process were studied by optical surface second-harmonic generation (SHG). The polymeric Langmuir-Blodgett (LB) monolayer composed of the triphenylamino-(p-nitrophenyl)-ethylene group as a ...

NASA Astrophysics Data System (ADS)

26
Correlation of Conformation with Antibody Affinity for Fibrinogen Gamma/Chain Carboxyl Terminal Peptide Segment.
1992-01-01

The carboxyl terminal amino acids of the 411 residue fibrinogen gamma-chain play a significant role in blood clotting. One of the steps in the polymerization of fibrinogen to fibrin involves the intermolecular gamma-chain crosslinking of the side chains o...

National Technical Information Service (NTIS)

27
Identification of short side chain bile acids in urine of patients with cerebrotendinous xanthomatosis.
1990-10-01

Urine from patients with cerebrotendinous xanthomatosis (CTX) was found to contain a number of minor bile acids along with three major bile acids, 7-epicholic acid, norcholic acid, and cholic acid. The following minor bile acids were identified by combined gas-liquid ...

PubMed

28
Protonation and deprotonation induced organo/hydrogelation: Bile acid derived gelators containing a basic side chain
2011-03-10

SummaryTwo bile acid derived molecules containing basic amino groups are reported to be efficient and unusual gelators of organic and aqueous solvents.

PubMed Central

29
Peptide Beta-Strand Mimics Based on Pyridinones, Pyrazinones Pyridazinones, and Triazinones.
2004-01-01

Peptide analogs in which one or more amino acids is replaced by a diaza- or triazacyclohexenone, or by an aza-, diaza-, or triazacyclohexenone that is substituted at the alpha-position with a side chain of an amino acid, display an improved ability to ass...

National Technical Information Service (NTIS)

30
Intramolecular Quenching of Tryptophan Phosphorescence in Short Peptides and Proteins¶

... of all protein moieties (side chains, peptide bonds, carboxylic acids and amines) by constructing tripeptides of the form ... sulfur atom of Met, and of amines and carboxylic acids (28). For the amino aci...

NBII National Biological Information Infrastructure

31
Genetic Engineering of Artificial Proteins Containing Non-Natural Amino Acids.
2001-01-01

This project has led to new approaches to protein engineering through incorporation of non-natural amino acids. Protein stability and reactivity can be varied within wide limits via incorporation of fluorinated, brominated and unsaturated side chains.

National Technical Information Service (NTIS)

32
GROWTH-REGULATING PROPERTIES OF DEUTERATED 2,4-DICHLOROPHENOXYACETIC ACID
1962-01-01

The preparation of side-chain deuterated 2,4-dichlorophenoxyacetic acid (2,4-D) is described. The growthregulating properties of the product, examined by three methods, were similar to those of 2,4-D. (auth)

Energy Citations Database

33
Conversion of Desoxycholic Acid into Corticoids (Unwandlung von Desoxycholsaeure in Corticoide).
1980-01-01

Two problems, the decomposition of the side chain to 20 ketone and the displacement of the oxygen function of C-12 toward C-11 to desoxycholic acid, are solved in a few reaction steps with higher yield than with the classical methods. Through a suitable c...

National Technical Information Service (NTIS)

34
A microscopic view of peptide and protein solvation.
2003-01-01

The structure and dynamics of the water hydrating peptides and proteins are examined here at atomic resolution via molecular dynamics simulations. Detailed solvation density and residence time data for all 20 L-amino acids in an end-capped AXA tripeptide motif are presented. In addition, the solvation of the protein chymotrypsin inhibitor 2 is investigated as a point of ...

PubMed

35
Simple physics-based analytical formulas for the potentials of mean force of the interaction of amino-acid side chains in water. V. Like-charged side chains.
2011-04-18

A new model of side-chain-side-chain interactions for charged side-chains of amino acids, to be used in the UNRES force-field, has been developed, in which a side chain consists of a nonpolar and a charged site. The interaction energy between the nonpolar sites is composed of a Gay-Berne and a ...

PubMed

36
Facile procedure for generating side chain functionalized poly(alpha-hydroxy acid) copolymers from aldehydes via a versatile Passerini-type condensation.
2010-08-01

A general method for synthesizing alpha-hydroxy N-acylindoles in one-pot via an acid-catalyzed condensation of a convertible isonitrile with water and various aldehydes is presented. These intermediates were incorporated into poly(alpha-hydroxy acid) copolymers bearing residues with functionalizable side chains, ...

PubMed

37
Electrochemical cells having a gelled anode-electrolyte mixture
1987-07-21

A method is described for improving the discharge characteristics of an electrochemical cell having a cathode, a powdered metal anode and an aqueous alkaline electrolyte solution comprising the step of gelling an intimate mixture of the powdered metal anode and electrolyte solution with an agent. The agent comprises a material capable of absorbing water and having a carbohydrate backbone and water ...

Energy Citations Database

38
Synthesis of Peptides from ?- and ?-Tubulin Containing Glutamic Acid Side-Chain Linked Oligo-Glu with Defined Length
2010-12-15

Side-chain oligo- and polyglutamylation represents an important posttranslational modification in tubulin physiology. The particular number of glutamate units is related to specific regulatory functions. In this work, we present a method for the synthesis of building blocks for the Fmoc synthesis of peptides containing main chain glutamic ...

PubMed Central

39
Intrinsic Amino Acid Side-Chain Hydrophilicity/Hydrophobicity Coefficients Determined by Reversed-Phase High-Performance Liquid Chromatography of Model Peptides: Comparison with Other Hydrophilicity/Hydrophobicity Scales
2009-01-01

An accurate determination of the intrinsic hydrophilicity/hydrophobicity of amino acid side-chains in peptides and proteins is fundamental in understanding many areas, including protein folding and stability, peptide and protein function, protein-protein interactions and peptide/protein oligomerization, as well as the design of protocols for purification ...

PubMed Central

40
Engineering of S2 site of aqualysin I; alteration of P2 specificity by excluding P2 side chain.
1998-12-15

Gly101, one of the conserved amino acid residues which was expected to be comprised in half-sphere-shaped S2 site small pocket of aqualysin I, a microbial thermophilic alkaline serine protease, was replaced by alanine, valine, or leucine to alterate the P2 specificity of the enzyme by excluding bulky P2 side chain of the substrate. By ...

PubMed

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41
Genetic algorithm with alternating selection pressure for protein side-chain packing and pK(a) prediction.
2011-06-06

The prediction of protein side-chain conformation is central for understanding protein functions. Side-chain packing is a sub-problem of protein folding and its computational complexity has been shown to be NP-hard. We investigated the capabilities of a hybrid (genetic algorithm/simulated annealing) technique for side-chain packing and ...

PubMed

42
Solubilities and transfer free energies of hydrophobic amino acids in polyol solutions: importance of the hydrophobicity of polyols.
2011-05-03

The purpose of this work was to investigate the difference in the hydrophobicities of various polyols and the nature of interactions between hydrophobic amino acid side chains and polyols. The interactions were explored by conducting solubility studies of three amino acid derivatives, N-acetyl tryptophanamide ...

PubMed

43
Energy maps, side chain conformational flexibility, and vibrational features of polar amino acids L-serine and L-threonine in aqueous environment.
2011-08-01

A comprehensive description of the energetic, conformational, and vibrational features of the two amino acids (AAs) with polar side chains, i.e., serine and threonine, in aqueous environment, is provided. To adequately analyze the side chain conformational flexibility of these amino ...

PubMed

44
Energy maps, side chain conformational flexibility, and vibrational features of polar amino acids L-serine and L-threonine in aqueous environment
2011-08-01

A comprehensive description of the energetic, conformational, and vibrational features of the two amino acids (AAs) with polar side chains, i.e., serine and threonine, in aqueous environment, is provided. To adequately analyze the side chain conformational flexibility of these amino ...

NASA Astrophysics Data System (ADS)

45
Molecular modeling of the short-side-chain perfluorosulfonic acid membrane.
2005-08-25

Presented here is a first principles based molecular modeling investigation of the possible role of the side chain in effecting proton transfer in the short-side-chain perfluorosulfonic acid fuel cell membrane under minimal hydration conditions. Extensive searches for the global minimum energy structures of ...

PubMed

46
Physics-based side-chain-rotamer and side-chain and backbone virtual-bond-stretching potentials for coarse-grained UNRES force field. 2. Comparison with statistical potentials and implementation
2010-04-30

Using the harmonic-approximation approach of the accompanying paper and AM1 energy surfaces of terminally-blocked amino-acid residues, we determined physics-based side-chain-rotamer potentials and the side-chain virtual-bond-deformation potentials of 19 natural amino-acid residues with side ...

PubMed Central

47
Experimental and theoretical investigations of the loss of amino acid side chains in electron capture dissociation of model peptides.
2005-09-01

Loss of side chains from different amino acid residues in a model peptide framework of RGGGXGGGR under electron capture dissociation conditions were systematically investigated, where X represents one of the twenty common amino acid residues. The alpha-carbon radical cations initially formed by N-Calpha cleavage of ...

PubMed

48
Original Contribution RELATIVE REACTIVITY OF LYSINE AND OTHER PEPTIDE-BOUND AMINO

TO OXIDATION BY HYPOCHLORITE ZACHARY D. NIGHTINGALE,* ANTONIO H. LANCHA, JR., SAMUEL K. HANDELMAN,* GREGORY G as a major oxidant. Numerous side chains of amino acids found in extracellular proteins can be modified, Met and Trp side chains of proteins might be able to protect Lys from chloramine ...

E-print Network

49
Liquid crystal alignment on polymer Langmuir-Blodgett films: the side chain effects
1993-11-01

By virtue of the flexibility of the Langmuir-Blodgett (LB) technique we prepare LB films of polyamic acid alkylamine salt with different structures and use them as alignment layers for liquid crystals. The alignment ability depends upon the controllability of the structure. Also the side chain effects are discussed.

NASA Astrophysics Data System (ADS)

50
Continuous control of liquid crystal pretilt angle from homeotropic to planar
2007-05-01

A mixture of two polyamic acids, one having an alkyl side chain and ordinarily used for vertical liquid crystal alignment and the other without a side chain and ordinarily used for planar alignment, is deposited on two substrates and baked at high temperatures. When the resulting cell is filled ...

NASA Astrophysics Data System (ADS)

51
Biodegradation of n-Alkylcycloalkanes and n-Alkylbenzenes via New Pathways in Alcanivorax sp. Strain MBIC 4326
2001-04-01

The degradation of long-chain n-alkylbenzenes and n-alkylcyclohexanes by Alcanivorax sp. strain MBIC 4326 was investigated. The alkyl side chain of these compounds was mainly processed by ?-oxidation. In the degradation of n-alkylcyclohexanes, cyclohexanecarboxylic acid was formed as an intermediate. This compound ...

PubMed Central

52
Microbial biodegradation of aromatic alkanoic naphthenic acids is affected by the degree of alkyl side chain branching.
2010-10-21

Naphthenic acids (NAs) occur naturally in oil sands and enter the environment through natural and anthropogenic processes. NAs comprise toxic carboxylic acids that are difficult to degrade. Information on NA biodegradation mechanisms is limited, and there are no studies on alkyl branched aromatic alkanoic acid biodegradation, despite ...

PubMed

53
Effects of alkyl side chains on properties of aliphatic amino acids probed using quantum chemical calculations.
2011-07-29

Effects of alkyl side chains (R-) on the electronic structural properties of aliphatic amino acids are investigated using quantum mechanical approaches. The carbon (C 1s) binding energy spectra of the aliphatic amino acids are derived from the C 1s spectrum of glycine (the parent spectrum) by the addition of ...

PubMed

54
Polyhydroxyalkanoate accumulating diversity of Pseudomonas species utilising aromatic hydrocarbons.
2005-10-05

A number of Pseudomonas strains accumulated polyhdroxyalkanoate (PHA) from a variety of aromatic hydrocarbons. In many strains the level of PHA accumulation was dependent on the side chain length of the phenylalkanoic acid provided for growth. 4 of the 8 strains accumulated increased levels of PHA as the side ...

PubMed

55
A strategy to synthesize taxol side chain and (-)-epi cytoxazone via chiral Br�nsted acid-Rh(2)(OAc)(4) co-catalyzed enantioselective three-component reactions.
2010-11-01

A new approach to synthesize optically active ?-amino-?-hydroxyl acid derivatives via chiral Br�nsted acid-Rh(2)(OAc)(4) cocatalyzed three-component reactions of diazo acetates with alcohols and imines is reported. A matched reaction system was identified to give the products in moderate diastereoselectivity and good enantioselectivity. Application of ...

PubMed

56
[Theoretical studies on fluorescence spectra of polyamic acid and it's grafted derivatives].
2005-10-01

A theoretical study on the polyamic acid (PAA) and its derivatives with different side chain (GPAA1-4) by semi-empirical PM3 is presented in this paper. After optimization, the authors get their balanceable geometric configurations. For all optimal geometric configurations, there is no imaginary frequency in vibrational analysis, which ...

PubMed

57
2D-IR Experiments and Simulations of the coupling between amide-I and ionizable side chains in proteins: Application to the Villin headpiece
2009-08-13

The carboxylate side chains of Asp and Glu have significant coupling with the amide states of the backbone of Villin headpiece. In two dimensional spectroscopy, cross peaks are observed between these side chains and the main amide-I band. To model the absorption of the side ...

PubMed Central

58
Molecular Engineering of Side Chain Liquid Crystalline ...
1992-03-27

... we will demonstrate the molecular engineering of phase transitions of side chain liquid crystalline polymers by azeotropic living copolymerization ...

DTIC Science & Technology

59
In Vitro Studies of Poison Oak Immunity
1979-11-01

Studies were performed to ascertain the effect of urushiol analogues on the in vitro lymphocyte blastogenesis elicited by urushiol in peripheral blood lymphocytes taken from individuals sensitized to poison oak or ivy. Urushiol is a mixture of alkylcatechols composed of a catechol ring coupled to mono-, di-, or tri-unsaturated C-15 or C-17 carbon side ...

PubMed Central

60
Solution conformations of barbituric acid derivatives: a 3J(13C,1H) NMR study.
1984-09-01

The conformations of the 5-alkyl chains of 5,5-dialkylbarbituric acid derivatives in polar and nonpolar media were determined from the magnitudes of the vicinal heteronuclear coupling constants between the alpha-alkyl hydrogens and the carbonyl carbons. The experimental 3J values have been compared to theoretical values, and the conformational populations ...

PubMed

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61
Structural and functional restraints on the occurrence of single amino acid variations in human proteins.
2010-02-12

Human genetic variation is the incarnation of diverse evolutionary history, which reflects both selectively advantageous and selectively neutral change. In this study, we catalogue structural and functional features of proteins that restrain genetic variation leading to single amino acid substitutions. Our variation dataset is divided into three categories: i) Mendelian ...

PubMed

62
Speculations on the evolution of the genetic code II
1978-12-01

An evolutionary scheme is postulated in which a primitive code, involving only guanine and cytosine, would code for glycine (GG), alanine (GC), arginine (CG) and proline (CC). From each of these amino acids and their codons, there evolves a family of related amino acids as the code expands. The four families are: (1)alanine valine, leucine, isoleucine, ...

NASA Astrophysics Data System (ADS)

63
Dual substrate recognition of aminotransferases.
2005-01-01

Pyridoxal 5'-phosphate-dependent aminotransferases reversibly catalyzes the transamination reaction in which the alpha-amino group of amino acid 1 is transferred to the 2-oxo acid of amino acid 2 (usually 2-oxoglutarate) to produce the 2-oxo acid of amino acid 1 and amino ...

PubMed

64
Effects of alkyl chain branching on the biotransformation of naphthenic acids.
2008-12-15

The rapid expansion of the oil sands industry has seen a concomitant expansion of the production of associated waste containing toxic naphthenic acids (NAs). Bioremediation of such waste is thus an important goal, but the mechanisms of biodegradation are still poorly understood, despite recent advances. Many oil sands NAs are resistant to biodegradation, and alkyl ...

PubMed

65
Characteristics of monolayer behavior and multilayer film structures of comb polymers having different kinds of fluorocarbon side-chains.
2004-10-01

With comb polymers with different kinds of fluorocarbon side-chains, significant effects of spreading solvents on the monolayers at the air/water interface and the molecular arrangement in the deposited films could be found by the use of trifluoroacetic acid and its mixed solvents with n-hexane, depending on the atoms, fluorine or hydrogen, substituted at ...

PubMed

66
Polymer Preprints 2000, 41(2), 1582 FUNCTIONALIZATION OF REGIOREGULAR HEAD-TO-TAIL

advantages in device application, including sensor application1 , state charge separated assemblies for photo voltaics2 and light emitting diodes3 . Polythiophene bearing carboxylic acid and amine side chains can

E-print Network

67
Nitric Acid Dehydration Using Perfluoro Carboxylate and Mixed Sulfonate/Carboxylate Membranes.
2004-01-01

Perfluoro ionomer membranes are tetrafluoro ethylene-based materials with microheterogeneous structures consisting of a hydrophobic polymer backbone and a hydrophilic side-chain cluster region. Due to the ionomer cluster morphology, these films exhibit un...

National Technical Information Service (NTIS)

68
Liquid Crystalline Side-Chain Polysiloxanes with 4-Amino-4' ...
1993-12-09

... with 4-Amino-4'-Stilbene-Carboxylic Ester Mesogens ... 4'.STILD EN E.CAR BOXYVLIC ESTER 0 ... in dry toluene Was catalyzed by chloroplatinic acid ...

DTIC Science & Technology

69
Electron-Donating Strengths of Side Chains in the Determination of Protein Structure.
1984-01-01

It is well established that the structure of proteins is determined by their amino acid sequences. A hypothesis for the presence of an induction component in the short range interaction that determines protein secondary structure was suggested in 1964 and...

National Technical Information Service (NTIS)

70
Crystallographic Studies of the Photosynthetic Reaction Center from R. Sphaeroides.
1986-01-01

The success of the molecular replacement technique in correctly revealing (1) the amino acid side-chains that are unique to R. sphaeroides and (2) electron densities for the reaction center chromophores proves that the solution is a correct one and that t...

National Technical Information Service (NTIS)

71
COMPARISON OF NODULISPORIC ACID ANALOGS IN A LUCILIA SERICATA IN VITRO ASSAY AND A CTENOCEPHALIDES FELIS MEMBRANE ...

... on individual compounds in the mono- and disubstituted amide series from the C-8 side chain. For ... the L. sericata larvae and the flea. Likewise, amide analogs with terminal, polar functions on the righ...

NBII National Biological Information Infrastructure

72
CHEMICAL AND ELECTRON-OPTICAL INVESTIGATIONS OF THE REACTION OF URANYL ACETATE WITH COLLAGEN
1963-01-01

After treatment with uranyl acetate, fibrils of collagen exhibited a cross-banded structure under the electron microscope. This striation was due to a cross linking of collagen molecules via the side chains of the amino acids. (auth)

Energy Citations Database

73
Binding of Warfarin Influences the Acid-Base Equilibrium of H242 in Sudlow Site I of Human Serum Albumin

... by removing all water and myristate groups. In addition, polar hydrogens were added and the Kollman united-atom charge ... points and 452 side chain contact atoms. In addition, the calculation of ... hyd...

NBII National Biological Information Infrastructure

74
################# Revised Version

). The one excep� tion is glycine in which the entire side chain is a single hydrogen atom; glycine are of four kinds. Seven are nonpolar: alanine (ala), valine (val), phenylalanine (phe), #12; 2 proline (pro amino acids seek water and are said to be hydrophilic. Glycine falls into a class of its own. 1

E-print Network

75
Synthesis of (�)-Bistellettadine A
2010-02-19

Esterification of the trienoic acid with o-xylylene dibromide gave the bis ester that underwent a templated Diels-Alder reaction to afford the macrodiolide stereospecifically in a single step. The synthesis of bistellettadine A was completed in four steps by hydrolysis and side chain elaboration.

PubMed Central

76
Acta Poloniae Pharmaceutica, Volume 25, Number 6, 1968.
1968-01-01

Contents: Bromination of N-Methylquinaldinum Iodide; Semisynthetic Penicillins. VIII. Influence of Substituents at apha-Position of the Side Chain on Stability in Acid Media; Viomycin Derivatives. III. Viomycinmethyltetracyclines - Their Preparation and P...

National Technical Information Service (NTIS)

77
Isotactic polyethylenimines induce formation of L amino acids in transamination
2007-02-23

Isotactic polyethylenimines with (S)-benzyl side chains were synthesized from 4-(S)-4-benzyl-2-oxazolines. When ?-ketoacids were subjected to transamination in the presence of this polymer, and a pyridoxamine coenzyme modified with hydrophobic chains, enantioselectivity towards the natural isomer (L>D) were observed, followed by ...

PubMed Central

78
Long-range side-chain�main-chain interactions play crucial roles in stabilizing the (??)8 barrel motif of the alpha subunit of tryptophan synthase
2007-07-01

The role of hither-to-fore unrecognized long-range hydrogen bonds between main-chain amide hydrogens and polar side chains on the stability of a well-studied (??)8, TIM barrel protein, the alpha subunit of tryptophan synthase (?TS), was probed by mutational analysis. The F19�D46 and I97�D124 hydrogen bonds ...

PubMed Central

79
Physicochemical principle to identify spherical symmetries in the genetic code
2004-05-01

Based on the molecular structural regularity in nucleobases, upon analysing the atomic contents in amino acid side chains together with solid geometrically rearranging a Hamiltonian graph of the genetic code, hidden rotational symmetries inherent in the degeneracy of codons are unraveled. The internal relation of the 20 amino ...

NASA Astrophysics Data System (ADS)

80
Progress in the field of physiologically active lanosterol compounds
1992-08-01

This review correlates the studies (up to 1991) on the isolation, structural determination, biological activity, and synthesis of physiologically active polyoxidised lanosterol derivatives of vegetable (inotodiol, ganoderic acids) and animal (seychellogenin) origin. The cytotoxic, cardiovascular, and other forms of activity of compounds of this type are of considerable ...

NASA Astrophysics Data System (ADS)

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81
Mechanism of the side-chain alkylation of toluene with methanol
1980-08-01

The side-chain alkylation of toluene at a 6:1 toluene-methanol ratio and 425/sup 0/C over potassium-exchanged X-zeolite in a flow reactor yielded 7.1% ethylbenzene and 7.4% styrene. Various other potassium-exchanged zeolites were less active. The pulsed reaction of toluene and methanol produced much more styrene than ethylbenzene, which indicated that styrene is a primary ...

Energy Citations Database

82
Alternative Fluoropolymers to Avoid the Challenges Associated with Perfluorooctanoic Acid
2008-01-01

The degradation of stain-resistant coating materials leads to the release of biopersistent perfluorooctanoic acid (PFOA) to the environment. In order to find the environmentally friendly substitutes, we have designed and synthesized a series of nonbiopersistant fluorinated polymers containing perfluorobutyl groups in the side chains. ...

Energy Citations Database

83
Synthetic strategy for side chain mono-N-alkylation of Fmoc-amino acids promoted by molecular sieves.
2010-11-11

A new synthetic strategy to alkylate amino groups under mild conditions has been developed. It utilizes only 4�� molecular sieves as base in order to promote the N-alkylation reaction, in presence of the appropriate alkyl halide. The methodology was validated by the simple and efficient side-chain N-alkylation of o-Ns-protected Fmoc-amino acid. One of ...

PubMed

84
Anacardic acid: molluscicide in cashew nut shell liquid.
1982-03-01

The components of anacardic acid, (a mixture of 6-n-C (15) alkylsalicylic acids whose side chains vary in degrees of unsaturation) have been isolated by high pressure liquid chromatography from a crude extract of cashew nut shell, Anacardium occidentale, and tested for toxicity to fresh water snails, Biomphalaria ...

PubMed

85
Specificity of the hepatocyte Na(+)-dependent taurocholate transporter: influence of side chain length and charge.
1991-01-01

Trihydroxy bile acids with differing nonsterol chain length and charge were synthesized to define the effect of these parameters on the ability to competitively inhibit the Na(+)-dependent uptake of 14C taurocholate into isolated rat hepatocytes. Compounds with long side chains (greater than or equal to 0.8 nm) ...

PubMed

86
Residue specific hydration of primary cell wall potato pectin identified by solid-state 13C single-pulse MAS and CP/MAS NMR spectroscopy.
2011-04-14

Hydration of rhamnogalacturonan-I (RG-I) derived from potato cell wall was analyzed by (13)C single-pulse (SP) magic-angle-spinning (MAS) and (13)C cross-polarization (CP) MAS nuclear magnetic resonance (NMR) and supported by (2)H SP/MAS NMR experiments. The study shows that the arabinan side chains hydrate more readily than the galactan ...

PubMed

87
Simple physics-based analytical formulas for the potentials of mean force of the interaction of amino-acid side chains in water. VI. Oppositely charged side chains.
2011-04-18

The two-site coarse-grained model for the interactions of charged side chains, to be used with our coarse-grained UNRES force field for protein simulations proposed in the accompanying paper, has been extended to pairs of oppositely charged side chains. The potentials of mean force of four pairs of molecules ...

PubMed

88
Surface Rheology of Monolayers of Poly(1-alkylene-co-maleic acid) at the Air/Water Interface: Surface Light Scattering Studies

Surface Rheology of Monolayers of Poly(1-alkylene-co-maleic acid) at the Air/Water Interface ABSTRACT: The surface viscoelasticity of poly(1-alkylene-co-maleic acid) (PXcMA) with side chains varying that interactions between the hydrophilic polymer head of maleic acid moiety and the interface ...

E-print Network

89
Structural and biochemical analyses reveal how ornithine acetyl transferase binds acidic and basic amino acid substrates.
2011-07-28

Structural and biochemical analyses reveal how ornithine acetyl-transferases catalyse the reversible transfer of an acetyl-group from a basic (ornithine) to an acidic (glutamate) amino acid by employing a common mechanism involving an acetyl-enzyme intermediate but using different side chain binding modes. ...

PubMed

90
Diastereoselective intramolecular additions of allyl- and propargylsilanes to iminium ions: synthesis of cyclic and bicyclic quaternary amino acids.
2010-07-01

Chiral imino lactones derived from (R)-phenylglycinol containing an allyl- or propargyltrimethylsilyl group in the side chain readily cyclized in the presence of acidic reagents to afford spirocyclic compounds with high diastereoselectivity. Removal of the chiral auxiliary produced 2-substituted 1-aminocycloalkanecarboxylic ...

PubMed

91
Well-defined polymers with activated ester and protected aldehyde side chains for bio-functionalization.
2007-04-21

Polymers with reactive side chains and narrow molecular weight distributions were synthesized by reversible addition-fragmentation chain transfer (RAFT) polymerization, and the potential to utilize these polymers to prepare drug carriers was demonstrated. p-Nitrophenyl methacrylate (NPMA) and diethoxypropyl methacrylate (DEPMA) were ...

PubMed

92
Synthesis of comb-like copolymers from renewable resources: Itaconic anhydride, stearyl methacrylate and lactic acid
2009-01-01

The synthesis and properties of comb-like copolymers and ionomers derived from renewable resources: itaconic anhydride (ITA), stearyl methacrylate (SM) and lactic acid (LA) are described. The copolymers based on ITA and SM (ITA-SM) were nearly random with a slight alternating tendency. The copolymers exhibited a nanophase-separated morphology, with the stearate ...

NASA Astrophysics Data System (ADS)

93
Quantifying amino acid conformational preferences and side-chain�side-chain interactions in ?-hairpins
2005-09-27

The intrinsic conformational biases of individual amino acids and their interstrand side-chain�side-chain (SC�SC) interactions both contribute to the stability of ?-sheets. The relative magnitudes of these effects have been difficult to assess in the context of folded proteins, where tertiary contacts complicate the quantitative analysis of local ...

PubMed Central

94
Information for proteomics: ESI-MS titration by sodium ions gives the number of carboxylate groups in peptides
2004-02-01

We studied the electrospray ionization (ESI) of various peptides containing amino acids with acidic side chains to test whether the pattern of molecular ion peaks provides information on the number of acidic side chains. When we increased the ...

NASA Astrophysics Data System (ADS)

95
Stapling of a 3(10)-helix with click chemistry.
2011-01-28

Short peptides are important as lead compounds and molecular probes in drug discovery and chemical biology, but their well-known drawbacks, such as high conformational flexibility, protease lability, poor bioavailability and short half-lives in vivo, have prevented their potential from being fully realized. Side chain-to-side chain ...

PubMed

96
[Influence of hydrophobicity of amino acid side chains on volume and viscosity properties of their aqueous solutions].

The standard partial molar volumes (V(0)(2),phi) and coefficients of viscosity (B eta) at 298.15 K for aqueous solutions of amino acids containing hydrophobic and hydrophilic groups have been calculated. Based on the transition state theory of Feakins, the partial molar free energies of activation of the viscous flow of amino acids in water have been ...

PubMed

97
Development of imidazole alkanoic acids as mGAT3 selective GABA uptake inhibitors.
2011-02-03

A new series of potential GABA uptake inhibitors starting from of 1H-imidazol-4-ylacetic acid with the carboxylic acid side chain originating from different positions and varying in length have been synthesized and tested for the inhibitory potency at the four GABA uptake transporters mGAT1-4 stably expressed in ...

PubMed

98
Enhanced production of longer side-chain polyhydroxyalkanoic acid with omega-aromatic group substitution in phaZ-disrupted Pseudomonas fluorescens BM07 mutant through unrelated carbon source cometabolism and salicylic acid beta-oxidation inhibition.
2010-02-12

The deletion of the intracellular polyhydroxyalkanoate (PHA) depolymerase gene (phaZ) in Pseudomonas fluorescens BM07 was found to increase more efficiently the levels of longer medium-chain-length (MCL) omega-aromatic monomer-units than in the wild-type strain when the cells were grown with a mixture of fructose and MCL omega-aromatic fatty acid in the ...

PubMed

99
Molecular modeling of the pendant chain in Nafion{reg_sign}
1998-03-01

Ion transport through perfluorosulfonic acid ionomers such as Nafion{reg_sign} is controlled by both the microstructure of the polymer and the charge and water distribution in the hydrated polymer. The authors present here the results of theoretical calculations on the side chain of Nafion{reg_sign}, establishing microscopic ...

DOE Information Bridge

100
Strong liquid-crystalline polymeric compositions
1993-01-01

Strong liquid-crystalline polymeric (LCP) compositions of matter. LCP backbones are combined with liquid crystalline (LC) side chains in a manner which maximizes molecular ordering through interdigitation of the side chains, thereby yielding materials which are predicted to have superior mechanical properties over ...

Energy Citations Database

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101
Strong liquid-crystalline polymeric compositions
1993-12-07

Strong liquid-crystalline polymeric (LCP) compositions of matter are described. LCP backbones are combined with liquid crystalline (LC) side chains in a manner which maximizes molecular ordering through interdigitation of the side chains, thereby yielding materials which are predicted to have superior mechanical ...

DOEpatents

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