Sequence Search Interface

Tips
- Click or mouse over the field name for specific tips
- The italicized fields are listed in output by default
- To list fields that are not listed by default or included in the search, put an asterisk (*) in the input box
- For other details about each field, see Help

Last GenBank update: 2009-04-05
Advanced Search

Sequence Information
Accession number	Subtype
Sequence name
Sampling country
Sampling city		Include recombinants
exact Sampling year	Virus
Sequence length		Include problematic sequences
Patient Information
Patient code	Infection country
Risk factor	Infection year
Viral load		Only sequences with HLA information
CD4 count	CD8 count
Other Information
Coreceptor	Phenotype
		Only drug naive sequences
Author last name	Days from seroconversion
Geographic region	Days from infection
Pubmed/Medline ID	Other fields
Find all sequences for a specific gene or region (HIV-1 and SIVcpz)
Genomic region
	To combine database sequences with your own sequence alignment, paste your aligned nucleotide sequences into the submission box below.

	Or upload your alignment file:

Or define start and end
Include fragments of minimum length

Output
List records per page
Show results selected Show SQL
Advanced Search

last modified: Thu Apr 9 08:47 2009

Index of all tools	ADRA	Branchlength
Codon Alignment	Consensus Maker	ELF
ElimDupes	Entropy	Epilign
FindModel	Format converter	Gap strip/squeeze
Gene Cutter	HDent/HDdist	Heatmap
Hepitope	Highlighter	HIV BLAST
HIValign	Hypermutation	jpHMM at GOBICS
Mosaic Vaccine Tool Suite	Motif Scan	N-Glycosite
ODprep/ODfit	PCOORD	PepMap
PeptGen	PhyloPlace	PhyML
Pixel	Primalign	Protein Feature Accent
Protein structure	Quick Align	Recombinant HIV-1 drawing tool
RIP	SeqPublish	Sequence locator
SNAP	SUDI subtyping	SynchAlign
Translate	Treemaker	TreeRate
VESPA	External tools

Any subtype
No subtype
A
A1
A2
B
C
D
F
F1
F2
G
H
J
K
N
O
U
CRF01_AE
CRF02_AG
CRF03_AB
CRF04_cpx
CRF05_DF
CRF06_cpx
CRF07_BC
CRF08_BC
CRF09_cpx
CRF10_CD
CRF11_cpx
CRF12_BF
CRF13_cpx
CRF14_BG
CRF15_01B
CRF16_A2D
CRF18_cpx
CRF19_cpx
CRF20_BG
CRF21_A2D
CRF22_01A1
CRF23_BG
CRF24_BG
CRF25_cpx
CRF26_AU
CRF27_cpx
CRF28_BF
CRF29_BF
CRF30_0206
CRF31_BC
CRF32_06A1
CRF33_01B
CRF34_01B
CRF35_AD
CRF36_cpx
CRF37_cpx
CRF38_BF
CRF39_BF
CRF40_BF
CRF41_CD
CRF42_BF
CRF43_02G
BABOON
COLOBUS
CPZ
DEBRAZZAS
DENT's
DRILL
GORILLA
GRIVET
GSN
LHOEST
MAC
MANDRIL-1
MANDRIL-2
MNE
MONA
MUSTACHED
MUSTACHED-1
MUSTACHED-2
PATAS
RCM
SABAEUS
SMM
STM
SUN
SYKES
TALAPOIN
TANTALUS
VERVET

Any
complete genome
5' LTR
5' LTR R
5' LTR U3
5' LTR U5
TAR
Gag-Pol
Gag
p17 (matrix)
p24 (capsid)
p7 (nucleocapsid)
p6
Pol CDS
p51 (RT)
p15 (RNAse H)
p31 (integrase)
protease
Vif CDS
Vpr CDS
Tat CDS (plus intron)
Tat exon 1
Tat exon 2
Rev CDS (plus intron)
Rev exon 1
Rev exon 2
Vpu CDS
Env CDS
V1
V2
V3
V4
V5
RRE
gp41
gp120
Nef CDS