Argonne National Laboratory

GM/CA @ APS

Users Publications

Department of Energy Office of Science
GM/CA @ APS Sponsors:
National Institute of General Medical Sciences (NIGMS) and National Cancer Institute (NCI) of the National Institutes of Health (NIH)
 

Users publications resulted from work at the GM/CA @ APS beamlines

(as of June 12, 2012)

  1. Zhou, J., Lancaster, L., Trakhanov, S., and Noller, H. F. (2012) Crystal structure of release factor RF3 trapped in the GTP state on a rotated conformation of the ribosome, RNA 18, 230-240.
  2. Zhang, L., Lu, X., Lu, J., Liang, H., Dai, Q., Xu, G. L., Luo, C., Jiang, H., and He, C. (2012) Thymine DNA glycosylase specifically recognizes 5-carboxylcytosine-modified DNA, Nat Chem Biol.
  3. Yoon, S. I., Kurnasov, O., Natarajan, V., Hong, M., Gudkov, A. V., Osterman, A. L., and Wilson, I. A. (2012) Structural basis of TLR5-flagellin recognition and signaling, Science 335, 859-864.
  4. Xu, R., McBride, R., Nycholat, C. M., Paulson, J. C., and Wilson, I. A. (2012) Structural characterization of the hemagglutinin receptor specificity from the 2009 H1N1 influenza pandemic, J Virol 86, 982-990.
  5. Wu, H., Wacker, D., Mileni, M., Katritch, V., Han, G. W., Vardy, E., Liu, W., Thompson, A. A., Huang, X. P., Carroll, F. I., Mascarella, S. W., Westkaemper, R. B., Mosier, P. D., Roth, B. L., Cherezov, V., and Stevens, R. C. (2012) Structure of the human kappa-opioid receptor in complex with JDTic, Nature.
  6. Wiener, R., Zhang, X., Wang, T., and Wolberger, C. (2012) The mechanism of OTUB1-mediated inhibition of ubiquitination, Nature 483, 618-622.
  7. Thompson, A. A., Liu, W., Chun, E., Katritch, V., Wu, H., Vardy, E., Huang, X. P., Trapella, C., Guerrini, R., Calo, G., Roth, B. L., Cherezov, V., and Stevens, R. C. (2012) Structure of the nociceptin/orphanin FQ receptor in complex with a peptide mimetic, Nature 485, 395-399.
  8. Symersky, J., Pagadala, V., Osowski, D., Krah, A., Meier, T., Faraldo-Gomez, J. D., and Mueller, D. M. (2012) Structure of the c(10) ring of the yeast mitochondrial ATP synthase in the open conformation, Nat Struct Mol Biol 19, 485-491.
  9. Sun, S., Gao, S., Kondabagil, K., Xiang, Y., Rossmann, M. G., and Rao, V. B. (2012) Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages, Proc Natl Acad Sci U S A 109, 817-822.
  10. Snell, G. (2012) X-ray sources and high-throughput data collection methods, Methods Mol Biol 841, 93-141.
  11. Rahman, M. N., Vlahakis, J. Z., Vukomanovic, D., Lee, W., Szarek, W. A., Nakatsu, K., and Jia, Z. (2012) A novel, "double-clamp" binding mode for human heme oxygenase-1 inhibition, PLoS One 7, e29514.
  12. Pavlovsky, A. G., Liu, X., Faehnle, C. R., Potente, N., and Viola, R. E. (2012) Structural characterization of inhibitors with selectivity against members of a homologous enzyme family, Chem Biol Drug Des 79, 128-136.
  13. Padayatti, P., Palczewska, G., Sun, W., Palczewski, K., and Salom, D. (2012) Imaging of protein crystals with two-photon microscopy, Biochemistry 51, 1625-1637.
  14. Obiero, J., Walker, J. R., and Dhe-Paganon, S. (2012) Fold of the conserved DTC domain in deltex proteins, Proteins 80, 1495-1499.
  15. Noinaj, N., Easley, N. C., Oke, M., Mizuno, N., Gumbart, J., Boura, E., Steere, A. N., Zak, O., Aisen, P., Tajkhorshid, E., Evans, R. W., Gorringe, A. R., Mason, A. B., Steven, A. C., and Buchanan, S. K. (2012) Structural basis for iron piracy by pathogenic Neisseria, Nature.
  16. Nichols, D. A., Jaishankar, P., Larson, W., Smith, E., Liu, G., Beyrouthy, R., Bonnet, R., Renslo, A. R., and Chen, Y. (2012) Structure-Based Design of Potent and Ligand-Efficient Inhibitors of CTX-M Class A beta-Lactamase, J Med Chem.
  17. Nemerow, G. R., Stewart, P. L., and Reddy, V. S. (2012) Structure of human adenovirus, Curr Opin Virol 2, 115-121.
  18. Mu, R., Dussupt, V., Jiang, J., Sette, P., Rudd, V., Chuenchor, W., Bello, N. F., Bouamr, F., and Xiao, T. S. (2012) Two Distinct Binding Modes Define the Interaction of Brox with the C-Terminal Tails of CHMP5 and CHMP4B, Structure.
  19. Mosser, R., Reddy, M. C., Bruning, J. B., Sacchettini, J. C., and Reinhart, G. D. (2012) Structure of the Apo Form of Bacillus stearothermophilus Phosphofructokinase, Biochemistry 51, 769-775.
  20. McElroy, C. A., Holland, P. J., Zhao, P., Lim, J. M., Wells, L., Eisenstein, E., and Walsh, S. T. (2012) Structural reorganization of the interleukin-7 signaling complex, Proc Natl Acad Sci U S A 109, 2503-2508.
  21. Manglik, A., Kruse, A. C., Kobilka, T. S., Thian, F. S., Mathiesen, J. M., Sunahara, R. K., Pardo, L., Weis, W. I., Kobilka, B. K., and Granier, S. (2012) Crystal structure of the micro-opioid receptor bound to a morphinan antagonist, Nature 485, 321-326.
  22. Liao, J., Li, H., Zeng, W., Sauer, D. B., Belmares, R., and Jiang, Y. (2012) Structural insight into the ion-exchange mechanism of the sodium/calcium exchanger, Science 335, 686-690.
  23. Li, M., Shandilya, S. M., Carpenter, M. A., Rathore, A., Brown, W. L., Perkins, A. L., Harki, D. A., Solberg, J., Hook, D. J., Pandey, K. K., Parniak, M. A., Johnson, J. R., Krogan, N. J., Somasundaran, M., Ali, A., Schiffer, C. A., and Harris, R. S. (2012) First-In-Class Small Molecule Inhibitors of the Single-Strand DNA Cytosine Deaminase APOBEC3G, ACS Chem Biol.
  24. Kruse, A. C., Hu, J., Pan, A. C., Arlow, D. H., Rosenbaum, D. M., Rosemond, E., Green, H. F., Liu, T., Chae, P. S., Dror, R. O., Shaw, D. E., Weis, W. I., Wess, J., and Kobilka, B. K. (2012) Structure and dynamics of the M3 muscarinic acetylcholine receptor, Nature 482, 552-556.
  25. Khare, R., Reddy, V. S., Nemerow, G. R., and Barry, M. A. (2012) Identification of adenovirus serotype 5 hexon regions that interact with scavenger receptors, J Virol 86, 2293-2301.
  26. Jin, T., Perry, A., Jiang, J., Smith, P., Curry, J. A., Unterholzner, L., Jiang, Z., Horvath, G., Rathinam, V. A., Johnstone, R. W., Hornung, V., Latz, E., Bowie, A. G., Fitzgerald, K. A., and Xiao, T. S. (2012) Structures of the HIN Domain:DNA Complexes Reveal Ligand Binding and Activation Mechanisms of the AIM2 Inflammasome and IFI16 Receptor, Immunity.
  27. Hanson, M. A., Roth, C. B., Jo, E., Griffith, M. T., Scott, F. L., Reinhart, G., Desale, H., Clemons, B., Cahalan, S. M., Schuerer, S. C., Sanna, M. G., Han, G. W., Kuhn, P., Rosen, H., and Stevens, R. C. (2012) Crystal structure of a lipid G protein-coupled receptor, Science 335, 851-855.
  28. Haga, K., Kruse, A. C., Asada, H., Yurugi-Kobayashi, T., Shiroishi, M., Zhang, C., Weis, W. I., Okada, T., Kobilka, B. K., Haga, T., and Kobayashi, T. (2012) Structure of the human M2 muscarinic acetylcholine receptor bound to an antagonist, Nature 482, 547-551.
  29. Gupta, S., Gellert, M., and Yang, W. (2012) Mechanism of mismatch recognition revealed by human MutSbeta bound to unpaired DNA loops, Nat Struct Mol Biol 19, 72-78.
  30. Granier, S., Manglik, A., Kruse, A. C., Kobilka, T. S., Thian, F. S., Weis, W. I., and Kobilka, B. K. (2012) Structure of the delta-opioid receptor bound to naltrindole, Nature 485, 400-404.
  31. Gorny, M. K., Pan, R., Williams, C., Wang, X. H., Volsky, B., O'Neal, T., Spurrier, B., Sampson, J. M., Li, L., Seaman, M. S., Kong, X. P., and Zolla-Pazner, S. (2012) Functional and immunochemical cross-reactivity of V2-specific monoclonal antibodies from HIV-1-infected individuals, Virology 427, 198-207.
  32. Feng, M., Jensen, L. M., Yukl, E. T., Wei, X., Liu, A., Wilmot, C. M., and Davidson, V. L. (2012) Proline 107 Is a Major Determinant in Maintaining the Structure of the Distal Pocket and Reactivity of the High-Spin Heme of MauG, Biochemistry.
  33. Dessanti, P., Zhang, Y., Allegrini, S., Tozzi, M. G., Sgarrella, F., and Ealick, S. E. (2012) Structural basis of the substrate specificity of Bacillus cereus adenosine phosphorylase, Acta Crystallogr D Biol Crystallogr 68, 239-248.
  34. Dassama, L. M., Boal, A. K., Krebs, C., Rosenzweig, A. C., and Bollinger, J. M. (2012) Evidence That the beta Subunit of Chlamydia trachomatis Ribonucleotide Reductase Is Active with the Manganese Ion of Its Manganese(IV)/Iron(III) Cofactor in Site 1, J Am Chem Soc 134, 2520-2523.
  35. Chen, C., Gorlatova, N., and Herzberg, O. (2012) Pliable DNA conformation of response elements bound to transcription factor P63, J Biol Chem.
  36. Brohawn, S. G., del Marmol, J., and MacKinnon, R. (2012) Crystal structure of the human K2P TRAAK, a lipid- and mechano-sensitive K+ ion channel, Science 335, 436-441.
  37. Bieniossek, C., Imasaki, T., Takagi, Y., and Berger, I. (2012) MultiBac: expanding the research toolbox for multiprotein complexes, Trends Biochem Sci 37, 49-57.
  38. Bailey, L. J., Acheson, J. F., McCoy, J. G., Elsen, N. L., Phillips, G. N., and Fox, B. G. (2012) Crystallographic analysis of active site contributions to regiospecificity in the diiron enzyme toluene 4-monooxygenase, Biochemistry 51, 1101-1113.
  39. Avvakumov, G. V., Walker, J. R., Xue, S., Allali-Hassani, A., Asinas, A., Nair, U. B., Fang, X., Zuo, X., Wang, Y. X., Wilkinson, K. D., and Dhe-Paganon, S. (2012) Two ZnF-UBP domains in isopeptidase T (USP5), Biochemistry 51, 1188-1198.
  40. Aryal, B. P., Brugarolas, P., and He, C. (2012) Binding of ReO4(-) with an engineered MoO4(2-)-binding protein: towards a new approach in radiopharmaceutical applications, J Biol Inorg Chem 17, 97-106.
  41. Zhu, J., Korostelev, A., Costantino, D. A., Donohue, J. P., Noller, H. F., and Kieft, J. S. (2011) Crystal structures of complexes containing domains from two viral internal ribosome entry site (IRES) RNAs bound to the 70S ribosome, Proc Natl Acad Sci U S A 108, 1839-1844.
  42. Zhou, X. E., Suino-Powell, K. M., Xu, Y., Chan, C. W., Tanabe, O., Kruse, S. W., Reynolds, R., Engel, J. D., and Xu, H. E. (2011) The orphan nuclear receptor TR4 is a vitamin A-activated nuclear receptor, J Biol Chem 286, 2877-2885.
  43. Yukl, E. T., Goblirsch, B. R., Davidson, V. L., and Wilmot, C. M. (2011) Crystal structures of CO and NO adducts of MauG in complex with pre-methylamine dehydrogenase: implications for the mechanism of dioxygen activation, Biochemistry 50, 2931-2938.
  44. Yoon, S. I., Hong, M., and Wilson, I. A. (2011) An unusual dimeric structure and assembly for TLR4 regulator RP105-MD-1, Nat Struct Mol Biol 18, 1028-1035.
  45. Xu, R., and Wilson, I. A. (2011) Structural characterization of an early fusion intermediate of influenza virus hemagglutinin, J Virol 85, 5172-5182.
  46. Xu, F., Wu, H., Katritch, V., Han, G. W., Jacobson, K. A., Gao, Z. G., Cherezov, V., and Stevens, R. C. (2011) Structure of an agonist-bound human A2A adenosine receptor, Science 332, 322-327.
  47. Xiang, Y., and Rossmann, M. G. (2011) Structure of bacteriophage phi 29 head fibers has a supercoiled triple repeating helix-turn-helix motif, P Natl Acad Sci USA 108, 4806-4810.
  48. Wielens, J., Headey, S. J., Deadman, J. J., Rhodes, D. I., Le, G. T., Parker, M. W., Chalmers, D. K., and Scanlon, M. J. (2011) Fragment-based design of ligands targeting a novel site on the integrase enzyme of human immunodeficiency virus 1, ChemMedChem 6, 258-261.
  49. Whorton, M. R., and MacKinnon, R. (2011) Crystal structure of the mammalian GIRK2 K+ channel and gating regulation by G proteins, PIP2, and sodium, Cell 147, 199-208.
  50. Wan, Q., Ahmad, M. F., Fairman, J., Gorzelle, B., de la Fuente, M., Dealwis, C., and Maguire, M. E. (2011) X-Ray Crystallography and Isothermal Titration Calorimetry Studies of the Salmonella Zinc Transporter ZntB, Structure 19, 700-710.
  51. Verdino, P., Witherden, D. A., Ferguson, M. S., Corper, A. L., Schiefner, A., Havran, W. L., and Wilson, I. A. (2011) Molecular insights into gammadelta T cell costimulation by an anti-JAML antibody, Structure 19, 80-89.
  52. Uysal, S., Cuello, L. G., Cortes, D. M., Koide, S., Kossiakoff, A. A., and Perozo, E. (2011) Mechanism of activation gating in the full-length KcsA K+ channel, Proc Natl Acad Sci U S A 108, 11896-11899.
  53. Tsai, C. L., Bridwell-Rabb, J., and Barondeau, D. P. (2011) Friedreich's Ataxia Variants I154F and W155R Diminish Frataxin-Based Activation of the Iron-Sulfur Cluster Assembly Complex, Biochemistry 50, 6478-6487.
  54. Torbeev, V. Y., Raghuraman, H., Hamelberg, D., Tonelli, M., Westler, W. M., Perozo, E., and Kent, S. B. H. (2011) Protein conformational dynamics in the mechanism of HIV-1 protease catalysis, P Natl Acad Sci USA 108, 20982-20987.
  55. Tarboush, N. A., Jensen, L. M., Yukl, E. T., Geng, J., Liu, A., Wilmot, C. M., and Davidson, V. L. (2011) Mutagenesis of tryptophan199 suggests that hopping is required for MauG-dependent tryptophan tryptophylquinone biosynthesis, Proc Natl Acad Sci U S A 108, 16956-16961.
  56. Tang, Y., Holbert, M. A., Delgoshaie, N., Wurtele, H., Guillemette, B., Meeth, K., Yuan, H., Drogaris, P., Lee, E. H., Durette, C., Thibault, P., Verreault, A., Cole, P. A., and Marmorstein, R. (2011) Structure of the Rtt109-AcCoA/Vps75 complex and implications for chaperone-mediated histone acetylation, Structure 19, 221-231.
  57. Syeda, F., Fagan, R. L., Wean, M., Avvakumov, G. V., Walker, J. R., Xue, S., Dhe-Paganon, S., and Brenner, C. (2011) The replication focus targeting sequence (RFTS) domain is a DNA-competitive inhibitor of Dnmt1, J Biol Chem 286, 15344-15351.
  58. Sun, J., Yang, Y., Wan, K., Mao, N., Yu, T. Y., Lin, Y. C., DeZwaan, D. C., Freeman, B. C., Lin, J. J., Lue, N. F., and Lei, M. (2011) Structural bases of dimerization of yeast telomere protein Cdc13 and its interaction with the catalytic subunit of DNA polymerase alpha, Cell Res 21, 258-274.
  59. Strushkevich, N., MacKenzie, F., Cherkesova, T., Grabovec, I., Usanov, S., and Park, H. W. (2011) Structural basis for pregnenolone biosynthesis by the mitochondrial monooxygenase system, Proc Natl Acad Sci U S A 108, 10139-10143.
  60. Spurrier, B., Sampson, J. M., Totrov, M., Li, H., O'Neal, T., Williams, C., Robinson, J., Gorny, M. K., Zolla-Pazner, S., and Kong, X. P. (2011) Structural analysis of human and macaque mAbs 2909 and 2.5B: implications for the configuration of the quaternary neutralizing epitope of HIV-1 gp120, Structure 19, 691-699.
  61. Smith, S. M., Rawat, S., Telser, J., Hoffman, B. M., Stemmler, T. L., and Rosenzweig, A. C. (2011) Crystal structure and characterization of particulate methane monooxygenase from Methylocystis species strain M, Biochemistry 50, 10231-10240.
  62. Singh, S., Chang, A., Goff, R. D., Bingman, C. A., Gruschow, S., Sherman, D. H., Phillips, G. N., Jr., and Thorson, J. S. (2011) Structural characterization of the mitomycin 7-O-methyltransferase, Proteins 79, 2181-2188.
  63. Shi, N., Zeng, W., Ye, S., Li, Y., and Jiang, Y. (2011) Crucial points within the pore as determinants of K channel conductance and gating, J Mol Biol 411, 27-35.
  64. Shi, M., Zhu, J., Wang, R., Chen, X., Mi, L., Walz, T., and Springer, T. A. (2011) Latent TGF-beta structure and activation, Nature 474, 343-349.
  65. Shi, C., Geders, T. W., Park, S. W., Wilson, D. J., Boshoff, H. I., Abayomi, O., Barry, C. E., Schnappinger, D., Finzel, B. C., and Aldrich, C. C. (2011) Mechanism-based Inactivation by Aromatization of the Transaminase BioA Involved in Biotin Biosynthesis in Mycobaterium tuberculosis, J Am Chem Soc 133, 18194-18201.
  66. Sette, P., Mu, R., Dussupt, V., Jiang, J., Snyder, G., Smith, P., Xiao, T. S., and Bouamr, F. (2011) The Phe105 Loop of Alix Bro1 Domain Plays a Key Role in HIV-1 Release, Structure 19, 1485-1495.
  67. Sethe Burgie, E., Bingman, C. A., Makino, S., Wesenberg, G. E., Pan, X., Fox, B. G., and Phillips, G. N., Jr. (2011) Structural architecture of Galdieria sulphuraria DCN1L, Proteins 79, 1329-1336.
  68. Sauer, D. B., Zeng, W., Raghunathan, S., and Jiang, Y. (2011) Protein interactions central to stabilizing the K+ channel selectivity filter in a four-sited configuration for selective K+ permeation, Proc Natl Acad Sci U S A 108, 16634-16639.
  69. Ryzhikov, M., Koroleva, O., Postnov, D., Tran, A., and Korolev, S. (2011) Mechanism of RecO recruitment to DNA by single-stranded DNA binding protein, Nucleic Acids Res 39, 6305-6314.
  70. Rosenbaum, D. M., Zhang, C., Lyons, J. A., Holl, R., Aragao, D., Arlow, D. H., Rasmussen, S. G., Choi, H. J., Devree, B. T., Sunahara, R. K., Chae, P. S., Gellman, S. H., Dror, R. O., Shaw, D. E., Weis, W. I., Caffrey, M., Gmeiner, P., and Kobilka, B. K. (2011) Structure and function of an irreversible agonist-beta(2) adrenoceptor complex, Nature 469, 236-240.
  71. Rasmussen, S. G., DeVree, B. T., Zou, Y., Kruse, A. C., Chung, K. Y., Kobilka, T. S., Thian, F. S., Chae, P. S., Pardon, E., Calinski, D., Mathiesen, J. M., Shah, S. T., Lyons, J. A., Caffrey, M., Gellman, S. H., Steyaert, J., Skiniotis, G., Weis, W. I., Sunahara, R. K., and Kobilka, B. K. (2011) Crystal structure of the beta2 adrenergic receptor-Gs protein complex, Nature 477, 549-555.
  72. Rasmussen, S. G., Choi, H. J., Fung, J. J., Pardon, E., Casarosa, P., Chae, P. S., Devree, B. T., Rosenbaum, D. M., Thian, F. S., Kobilka, T. S., Schnapp, A., Konetzki, I., Sunahara, R. K., Gellman, S. H., Pautsch, A., Steyaert, J., Weis, W. I., and Kobilka, B. K. (2011) Structure of a nanobody-stabilized active state of the beta(2) adrenoceptor, Nature 469, 175-180.
  73. Plevka, P., Kaufmann, B., and Rossmann, M. G. (2011) Analysis of phases in the structure determination of an icosahedral virus, Acta Crystallographica Section D-Biological Crystallography 67, 568-577.
  74. Pejchal, R., Doores, K. J., Walker, L. M., Khayat, R., Huang, P. S., Wang, S. K., Stanfield, R. L., Julien, J. P., Ramos, A., Crispin, M., Depetris, R., Katpally, U., Marozsan, A., Cupo, A., Maloveste, S., Liu, Y., McBride, R., Ito, Y., Sanders, R. W., Ogohara, C., Paulson, J. C., Feizi, T., Scanlan, C. N., Wong, C. H., Moore, J. P., Olson, W. C., Ward, A. B., Poignard, P., Schief, W. R., Burton, D. R., and Wilson, I. A. (2011) A Potent and Broad Neutralizing Antibody Recognizes and Penetrates the HIV Glycan Shield, Science.
  75. Pai, J. C., Culver, J. A., Drury, J. E., Motani, R. S., Lieberman, R. L., and Maynard, J. A. (2011) Conversion of scFv peptide-binding specificity for crystal chaperone development, Protein Eng Des Sel 24, 419-428.
  76. Oldham, M. L., and Chen, J. (2011) Snapshots of the maltose transporter during ATP hydrolysis, P Natl Acad Sci USA 108, 15152-15156.
  77. Oldham, M. L., and Chen, J. (2011) Crystal structure of the maltose transporter in a pretranslocation intermediate state, Science 332, 1202-1205.
  78. Ojo, K. K., Arakaki, T. L., Napuli, A. J., Inampudi, K. K., Keyloun, K. R., Zhang, L., Hol, W. G., Verlinde, C. L., Merritt, E. A., and Van Voorhis, W. C. (2011) Structure determination of glycogen synthase kinase-3 from Leishmania major and comparative inhibitor structure-activity relationships with Trypanosoma brucei GSK-3, Mol Biochem Parasitol 176, 98-108.
  79. Noinaj, N., Fairman, J. W., and Buchanan, S. K. (2011) The crystal structure of BamB suggests interactions with BamA and its role within the BAM complex, J Mol Biol 407, 248-260.
  80. Noinaj, N., Bosserman, M. A., Schickli, M. A., Piszczek, G., Kharel, M. K., Pahari, P., Buchanan, S. K., and Rohr, J. (2011) The crystal structure and mechanism of an unusual oxidoreductase, GilR, involved in gilvocarcin V biosynthesis, J Biol Chem 286, 23533-23543.
  81. Nelersa, C. M., Schmier, B. J., and Malhotra, A. (2011) Purification and crystallization of Bacillus subtilis NrnA, a novel enzyme involved in nanoRNA degradation, Acta Crystallogr Sect F Struct Biol Cryst Commun 67, 1235-1238.
  82. Nady, N., Lemak, A., Walker, J. R., Avvakumov, G. V., Kareta, M. S., Achour, M., Xue, S., Duan, S., Allali-Hassani, A., Zuo, X., Wang, Y. X., Bronner, C., Chedin, F., Arrowsmith, C. H., and Dhe-Paganon, S. (2011) Recognition of Multivalent Histone States Associated with Heterochromatin by UHRF1 Protein, J Biol Chem 286, 24300-24311.
  83. Mileni, M., Garfunkle, J., Ezzili, C., Cravatt, B. F., Stevens, R. C., and Boger, D. L. (2011) Fluoride-mediated capture of a noncovalent bound state of a reversible covalent enzyme inhibitor: X-ray crystallographic analysis of an exceptionally potent alpha-ketoheterocycle inhibitor of fatty acid amide hydrolase, J Am Chem Soc 133, 4092-4100.
  84. McLellan, J. S., Pancera, M., Carrico, C., Gorman, J., Julien, J. P., Khayat, R., Louder, R., Pejchal, R., Sastry, M., Dai, K., O'Dell, S., Patel, N., Shahzad-ul-Hussan, S., Yang, Y., Zhang, B., Zhou, T., Zhu, J., Boyington, J. C., Chuang, G. Y., Diwanji, D., Georgiev, I., Kwon, Y. D., Lee, D., Louder, M. K., Moquin, S., Schmidt, S. D., Yang, Z. Y., Bonsignori, M., Crump, J. A., Kapiga, S. H., Sam, N. E., Haynes, B. F., Burton, D. R., Koff, W. C., Walker, L. M., Phogat, S., Wyatt, R., Orwenyo, J., Wang, L. X., Arthos, J., Bewley, C. A., Mascola, J. R., Nabel, G. J., Schief, W. R., Ward, A. B., Wilson, I. A., and Kwong, P. D. (2011) Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9, Nature 480, 336-343.
  85. Macheboeuf, P., Buffalo, C., Fu, C. Y., Zinkernagel, A. S., Cole, J. N., Johnson, J. E., Nizet, V., and Ghosh, P. (2011) Streptococcal M1 protein constructs a pathological host fibrinogen network, Nature 472, 64-68.
  86. Liu, X., Bushnell, D. A., Silva, D. A., Huang, X., and Kornberg, R. D. (2011) Initiation complex structure and promoter proofreading, Science 333, 633-637.
  87. Lin, D. Y., Diao, J., Zhou, D., and Chen, J. (2011) Biochemical and structural studies of a HECT-like ubiquitin ligase from Escherichia coli O157:H7, J Biol Chem 286, 441-449.
  88. Lin, C. C., Baek, K., and Lu, Z. (2011) Apo and InsP-bound crystal structures of the ligand-binding domain of an InsP receptor, Nat Struct Mol Biol 18, 1172-1174.
  89. Li, D., Lee, J., and Caffrey, M. (2011) Crystallizing Membrane Proteins in Lipidic Mesophases. A Host Lipid Screen, Cryst Growth Des 11, 530-537.
  90. Leonard, T. A., Rozycki, B., Saidi, L. F., Hummer, G., and Hurley, J. H. (2011) Crystal structure and allosteric activation of protein kinase C betaII, Cell 144, 55-66.
  91. Lazar, L. M., Fisher, S. Z., Moulin, A. G., Kovalevsky, A., Novak, W. R., Langan, P., Petsko, G. A., and Ringe, D. (2011) Time-of-flight neutron diffraction study of bovine gamma-chymotrypsin at the Protein Crystallography Station, Acta Crystallogr Sect F Struct Biol Cryst Commun 67, 587-590.
  92. Krause, J. C., Ekiert, D. C., Tumpey, T. M., Smith, P. B., Wilson, I. A., and Crowe, J. E., Jr. (2011) An insertion mutation that distorts antibody binding site architecture enhances function of a human antibody, MBio 2, e00345-00310.
  93. Kirchdoerfer, R. N., Garner, A. L., Flack, C. E., Mee, J. M., Horswill, A. R., Janda, K. D., Kaufmann, G. F., and Wilson, I. A. (2011) Structural basis for ligand recognition and discrimination of a quorum-quenching antibody, J Biol Chem 286, 17351-17358.
  94. Kim, H. C., Steffen, A. M., Oldham, M. L., Chen, J., and Huibregtse, J. M. (2011) Structure and function of a HECT domain ubiquitin-binding site, EMBO Rep 12, 334-341.
  95. Khayat, R., Brunn, N., Speir, J. A., Hardham, J. M., Ankenbauer, R. G., Schneemann, A., and Johnson, J. E. (2011) The 2.3-angstrom structure of porcine circovirus 2, J Virol 85, 7856-7862.
  96. Kaustov, L., Ouyang, H., Amaya, M., Lemak, A., Nady, N., Duan, S., Wasney, G. A., Li, Z., Vedadi, M., Schapira, M., Min, J., and Arrowsmith, C. H. (2011) Recognition and specificity determinants of the human cbx chromodomains, J Biol Chem 286, 521-529.
  97. Kaufmann, B., El-Far, M., Plevka, P., Bowman, V. D., Li, Y., Tijssen, P., and Rossmann, M. G. (2011) Structure of Bombyx mori Densovirus 1, a Silkworm Pathogen, Journal of Virology 85, 4691-4697.
  98. Joshi, R., Ho, K. K., Tenney, K., Chen, J. H., Golden, B. L., and Gimble, F. S. (2011) Evolution of I-SceI homing endonucleases with increased DNA recognition site specificity, J Mol Biol 405, 185-200.
  99. Imasaki, T., Calero, G., Cai, G., Tsai, K. L., Yamada, K., Cardelli, F., Erdjument-Bromage, H., Tempst, P., Berger, I., Kornberg, G. L., Asturias, F. J., Kornberg, R. D., and Takagi, Y. (2011) Architecture of the Mediator head module, Nature.
  100. Ilies, M., Di Costanzo, L., Dowling, D. P., Thorn, K. J., and Christianson, D. W. (2011) Binding of alpha,alpha-Disubstituted Amino Acids to Arginase Suggests New Avenues for Inhibitor Design, J Med Chem 54, 5432-5443.
  101. Hofer, N., Aragao, D., Lyons, J. A., and Caffrey, M. (2011) Membrane Protein Crystallization in Lipidic Mesophases. Hosting Lipid Effects on the Crystallization and Structure of a Transmembrane Peptide, Am Chem Soc 11, 1182-1192.
  102. Hausmann, J., Kamtekar, S., Christodoulou, E., Day, J. E., Wu, T., Fulkerson, Z., Albers, H. M., van Meeteren, L. A., Houben, A. J., van Zeijl, L., Jansen, S., Andries, M., Hall, T., Pegg, L. E., Benson, T. E., Kasiem, M., Harlos, K., Kooi, C. W., Smyth, S. S., Ovaa, H., Bollen, M., Morris, A. J., Moolenaar, W. H., and Perrakis, A. (2011) Structural basis of substrate discrimination and integrin binding by autotaxin, Nat Struct Mol Biol 18, 198-204.
  103. Gonzales-Vigil, E., Bianchetti, C. M., Phillips, G. N., Jr., and Howe, G. A. (2011) Adaptive evolution of threonine deaminase in plant defense against insect herbivores, Proc Natl Acad Sci U S A 108, 5897-5902.
  104. Fokine, A., Islam, M. Z., Zhang, Z., Bowman, V. D., Rao, V. B., and Rossmann, M. G. (2011) Structure of the three N-terminal immunoglobulin domains of the highly immunogenic outer capsid protein from a t4-like bacteriophage, J Virol 85, 8141-8148.
  105. Fleishman, S. J., Whitehead, T. A., Ekiert, D. C., Dreyfus, C., Corn, J. E., Strauch, E. M., Wilson, I. A., and Baker, D. (2011) Computational design of proteins targeting the conserved stem region of influenza hemagglutinin, Science 332, 816-821.
  106. Fairman, J. W., Wijerathna, S. R., Ahmad, M. F., Xu, H., Nakano, R., Jha, S., Prendergast, J., Welin, R. M., Flodin, S., Roos, A., Nordlund, P., Li, Z., Walz, T., and Dealwis, C. G. (2011) Structural basis for allosteric regulation of human ribonucleotide reductase by nucleotide-induced oligomerization, Nat Struct Mol Biol 18, 316-322.
  107. Dolan, K. T., Duguid, E. M., and He, C. (2011) Crystal structures of SlyA protein, a master virulence regulator of Salmonella, in free and DNA-bound states, J Biol Chem 286, 22178-22185.
  108. Dias, M. V., Snee, W. C., Bromfield, K. M., Payne, R. J., Palaninathan, S. K., Ciulli, A., Howard, N. I., Abell, C., Sacchettini, J. C., and Blundell, T. L. (2011) Structural investigation of inhibitor designs targeting 3-dehydroquinate dehydratase from the shikimate pathway of Mycobacterium tuberculosis, Biochem J 436, 729-739.
  109. Derebe, M. G., Zeng, W., Li, Y., Alam, A., and Jiang, Y. (2011) Structural studies of ion permeation and Ca2+ blockage of a bacterial channel mimicking the cyclic nucleotide-gated channel pore, Proc Natl Acad Sci U S A 108, 592-597.
  110. Derebe, M. G., Sauer, D. B., Zeng, W., Alam, A., Shi, N., and Jiang, Y. (2011) Tuning the ion selectivity of tetrameric cation channels by changing the number of ion binding sites, Proc Natl Acad Sci U S A 108, 598-602.
  111. Davies, D. R., Staker, B. L., Abendroth, J. A., Edwards, T. E., Hartley, R., Leonard, J., Kim, H., Rychel, A. L., Hewitt, S. N., Myler, P. J., and Stewart, L. J. (2011) An ensemble of structures of Burkholderia pseudomallei 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, Acta Crystallogr Sect F Struct Biol Cryst Commun 67, 1044-1050.
  112. Davies, C. W., Paul, L. N., Kim, M. I., and Das, C. (2011) Structural and thermodynamic comparison of the catalytic domain of AMSH and AMSH-LP: nearly identical fold but different stability, J Mol Biol 413, 416-429.
  113. Chen, C., Gorlatova, N., Kelman, Z., and Herzberg, O. (2011) Structures of p63 DNA binding domain in complexes with half-site and with spacer-containing full response elements, Proc Natl Acad Sci U S A 108, 6456-6461.
  114. Chang, A., Singh, S., Helmich, K. E., Goff, R. D., Bingman, C. A., Thorson, J. S., and Phillips, G. N., Jr. (2011) Complete set of glycosyltransferase structures in the calicheamicin biosynthetic pathway reveals the origin of regiospecificity, Proc Natl Acad Sci U S A 108, 17649-17654.
  115. Chang, A., Singh, S., Bingman, C. A., Thorson, J. S., and Phillips, G. N., Jr. (2011) Structural characterization of CalO1: a putative orsellinic acid methyltransferase in the calicheamicin-biosynthetic pathway, Acta Crystallogr D Biol Crystallogr 67, 197-203.
  116. Chakrapani, S., Cordero-Morales, J. F., Jogini, V., Pan, A. C., Cortes, D. M., Roux, B., and Perozo, E. (2011) On the structural basis of modal gating behavior in K(+) channels, Nat Struct Mol Biol 18, 67-74.
  117. Burgie, S. E., Bingman, C. A., Soni, A. B., and Phillips, G. N., Jr. (2011) Structural characterization of human Uch37, Proteins.
  118. Bruning, J. B., Murillo, A. C., Chacon, O., Barletta, R. G., and Sacchettini, J. C. (2011) Structure of the Mycobacterium tuberculosis D-alanine:D-alanine ligase, a target of the antituberculosis drug D-cycloserine, Antimicrob Agents Chemother 55, 291-301.
  119. Brugarolas, P., Duguid, E. M., Zhang, W., Poor, C. B., and He, C. (2011) Structural and biochemical characterization of N5-carboxyaminoimidazole ribonucleotide synthetase and N5-carboxyaminoimidazole ribonucleotide mutase from Staphylococcus aureus, Acta Crystallogr D Biol Crystallogr 67, 707-715.
  120. Brodkin, H. R., Novak, W. R., Milne, A. C., D'Aquino, J. A., Karabacak, N. M., Goldberg, I. G., Agar, J. N., Payne, M. S., Petsko, G. A., Ondrechen, M. J., and Ringe, D. (2011) Evidence of the participation of remote residues in the catalytic activity of Co-type nitrile hydratase from Pseudomonas putida, Biochemistry 50, 4923-4935.
  121. Boal, A. K., Grove, T. L., McLaughlin, M. I., Yennawar, N. H., Booker, S. J., and Rosenzweig, A. C. (2011) Structural basis for methyl transfer by a radical SAM enzyme, Science 332, 1089-1092.
  122. Bian, C., Xu, C., Ruan, J., Lee, K. K., Burke, T. L., Tempel, W., Barsyte, D., Li, J., Wu, M., Zhou, B. O., Fleharty, B. E., Paulson, A., Allali-Hassani, A., Zhou, J. Q., Mer, G., Grant, P. A., Workman, J. L., Zang, J., and Min, J. (2011) Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation, EMBO J 30, 2829-2842.
  123. Bhabha, G., Lee, J., Ekiert, D. C., Gam, J., Wilson, I. A., Dyson, H. J., Benkovic, S. J., and Wright, P. E. (2011) A dynamic knockout reveals that conformational fluctuations influence the chemical step of enzyme catalysis, Science 332, 234-238.
  124. Berman, L. E., Allaire, M., Chance, M. R., Hendrickson, W. A., Heroux, A., Jakoncic, J., Liu, Q., Orville, A. M., Robinson, H. H., Schneider, D. K., Shi, W., Soares, A. S., Stojanoff, V., Stoner-Ma, D., and Sweet, R. M. (2011) Optics Concept for a Pair of Undulator Beamlines for MX, Nucl Instrum Methods Phys Res A 649, 131-135.
  125. Begley, D. W., Davies, D. R., Hartley, R. C., Hewitt, S. N., Rychel, A. L., Myler, P. J., Van Voorhis, W. C., Staker, B. L., and Stewart, L. J. (2011) Probing conformational states of glutaryl-CoA dehydrogenase by fragment screening, Acta Crystallogr Sect F Struct Biol Cryst Commun 67, 1060-1069.
  126. Begley, D. W., Davies, D. R., Hartley, R. C., Edwards, T. E., Staker, B. L., Van Voorhis, W. C., Myler, P. J., and Stewart, L. J. (2011) Fragment screening of infectious disease targets in a structural genomics environment, Methods Enzymol 493, 533-556.
  127. Bae, B., Cobb, R. E., DeSieno, M. A., Zhao, H., and Nair, S. K. (2011) New N-acetyltransferase fold in the structure and mechanism of the phosphonate biosynthetic enzyme FrbF, J Biol Chem 286, 36132-36141.
  128. Bade-Doding, C., Theodossis, A., Gras, S., Kjer-Nielsen, L., Eiz-Vesper, B., Seltsam, A., Huyton, T., Rossjohn, J., McCluskey, J., and Blasczyk, R. (2011) The impact of human leukocyte antigen (HLA) micropolymorphism on ligand specificity within the HLA-B*41 allotypic family, Haematologica 96, 110-118.
  129. Avdic, V., Zhang, P., Lanouette, S., Voronova, A., Skerjanc, I., and Couture, J. F. (2011) Fine-tuning the stimulation of MLL1 methyltransferase activity by a histone H3-based peptide mimetic, FASEB J 25, 960-967.
  130. Arockiasamy, A., Aggarwal, A., Savva, C. G., Holzenburg, A., and Sacchettini, J. C. (2011) Crystal structure of calcium dodecin (Rv0379), from Mycobacterium tuberculosis with a unique calcium-binding site, Protein Sci 20, 827-833.
  131. Aksyuk, A. A., Kurochkina, L. P., Fokine, A., Forouhar, F., Mesyanzhinov, V. V., Tong, L., and Rossmann, M. G. (2011) Structural conservation of the myoviridae phage tail sheath protein fold, Structure 19, 1885-1894.
  132. Adams-Cioaba, M. A., Krupa, J. C., Xu, C., Mort, J. S., and Min, J. (2011) Structural basis for the recognition and cleavage of histone H3 by cathepsin L, Nat Commun 2, 197.
  133. Abu Tarboush, N., Jensen, L. M. R., Yukl, E. T., Geng, J. F., Liu, A. M., Wilmot, C. M., and Davidson, V. L. (2011) Mutagenesis of tryptophan199 suggests that hopping is required for MauG-dependent tryptophan tryptophylquinone biosynthesis, P Natl Acad Sci USA 108, 16956-16961.
  134. Zuercher, W. J., Buckholz, R. G., Campobasso, N., Collins, J. L., Galardi, C. M., Gampe, R. T., Hyatt, S. M., Merrihew, S. L., Moore, J. T., Oplinger, J. A., Reid, P. R., Spearing, P. K., Stanley, T. B., Stewart, E. L., and Willson, T. M. (2010) Discovery of tertiary sulfonamides as potent liver X receptor antagonists, J Med Chem 53, 3412-3416.
  135. Zhu, J., Negri, A., Provasi, D., Filizola, M., Coller, B. S., and Springer, T. A. (2010) Closed headpiece of integrin alphaIIbbeta3 and its complex with an alphaIIbbeta3-specific antagonist that does not induce opening, Blood 116, 5050-5059.
  136. Zhang, X., He, Y., Liu, S., Yu, Z., Jiang, Z. X., Yang, Z., Dong, Y., Nabinger, S. C., Wu, L., Gunawan, A. M., Wang, L., Chan, R. J., and Zhang, Z. Y. (2010) Salicylic acid based small molecule inhibitor for the oncogenic Src homology-2 domain containing protein tyrosine phosphatase-2 (SHP2), J Med Chem 53, 2482-2493.
  137. Yoshida, K., Corper, A. L., Herro, R., Jabri, B., Wilson, I. A., and Teyton, L. (2010) The diabetogenic mouse MHC class II molecule I-Ag7 is endowed with a switch that modulates TCR affinity, J Clin Invest 120, 1578-1590.
  138. Yoon, S. I., Hong, M., Han, G. W., and Wilson, I. A. (2010) Crystal structure of soluble MD-1 and its interaction with lipid IVa, Proc Natl Acad Sci U S A 107, 10990-10995.
  139. Yi, C., Jia, G., Hou, G., Dai, Q., Zhang, W., Zheng, G., Jian, X., Yang, C. G., Cui, Q., and He, C. (2010) Iron-catalysed oxidation intermediates captured in a DNA repair dioxygenase, Nature 468, 330-333.
  140. Yeh, J. I., Pohl, E., Truan, D., He, W., Sheldrick, G. M., Du, S., and Achim, C. (2010) The crystal structure of non-modified and bipyridine-modified PNA duplexes, Chemistry 16, 11867-11875.
  141. Ye, S., Li, Y., and Jiang, Y. (2010) Novel insights into K+ selectivity from high-resolution structures of an open K+ channel pore, Nat Struct Mol Biol 17, 1019-1023.
  142. Yang, D., and Hurley, J. H. (2010) Structural role of the Vps4-Vta1 interface in ESCRT-III recycling, Structure 18, 976-984.
  143. Xu, R., Ekiert, D. C., Krause, J. C., Hai, R., Crowe, J. E., Jr., and Wilson, I. A. (2010) Structural basis of preexisting immunity to the 2009 H1N1 pandemic influenza virus, Science 328, 357-360.
  144. Xu, R., McBride, R., Paulson, J. C., Basler, C. F., and Wilson, I. A. (2010) Structure, Receptor Binding, and Antigenicity of Influenza Virus Hemagglutinins from the 1957 H2N2 Pandemic, J. Virol. 84, 1715-1721.
  145. Xie, C., Zhu, J., Chen, X., Mi, L., Nishida, N., and Springer, T. A. (2010) Structure of an integrin with an alphaI domain, complement receptor type 4, EMBO J 29, 666-679.
  146. Xiang, Y., Baxa, U., Zhang, Y., Steven, A. C., Lewis, G. L., Van Etten, J. L., and Rossmann, M. G. (2010) Crystal structure of a virus-encoded putative glycosyltransferase, J Virol 84, 12265-12273.
  147. Wu, Y., Yang, Y., Ye, S., and Jiang, Y. (2010) Structure of the gating ring from the human large-conductance Ca(2+)-gated K(+) channel, Nature 466, 393-397.
  148. Wu, B., Chien, E. Y., Mol, C. D., Fenalti, G., Liu, W., Katritch, V., Abagyan, R., Brooun, A., Wells, P., Bi, F. C., Hamel, D. J., Kuhn, P., Handel, T. M., Cherezov, V., and Stevens, R. C. (2010) Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists, Science 330, 1066-1071.
  149. Wielens, J., Headey, S. J., Jeevarajah, D., Rhodes, D. I., Deadman, J., Chalmers, D. K., Scanlon, M. J., and Parker, M. W. (2010) Crystal structure of the HIV-1 integrase core domain in complex with sucrose reveals details of an allosteric inhibitory binding site, FEBS Lett 584, 1455-1462.
  150. Walpole, N. G., Kjer-Nielsen, L., Kostenko, L., McCluskey, J., Brooks, A. G., Rossjohn, J., and Clements, C. S. (2010) The structure and stability of the monomorphic HLA-G are influenced by the nature of the bound peptide, J Mol Biol 397, 467-480.
  151. Wacker, D., Fenalti, G., Brown, M. A., Katritch, V., Abagyan, R., Cherezov, V., and Stevens, R. C. (2010) Conserved binding mode of human beta2 adrenergic receptor inverse agonists and antagonist revealed by X-ray crystallography, J Am Chem Soc 132, 11443-11445.
  152. Vivian, J. P., Riedmaier, P., Ge, H., Le Nours, J., Sansom, F. M., Wilce, M. C., Byres, E., Dias, M., Schmidberger, J. W., Cowan, P. J., d'Apice, A. J., Hartland, E. L., Rossjohn, J., and Beddoe, T. (2010) Crystal structure of a Legionella pneumophila ecto -triphosphate diphosphohydrolase, a structural and functional homolog of the eukaryotic NTPDases, Structure 18, 228-238.
  153. Verdino, P., Witherden, D. A., Havran, W. L., and Wilson, I. A. (2010) The molecular interaction of CAR and JAML recruits the central cell signal transducer PI3K, Science 329, 1210-1214.
  154. Ukaegbu, U. E., Kantz, A., Beaton, M., Gassner, G. T., and Rosenzweig, A. C. (2010) Structure and ligand binding properties of the epoxidase component of styrene monooxygenase, Biochemistry 49, 1678-1688.
  155. Tong, Y., Tempel, W., Wang, H., Yamada, K., Shen, L., Senisterra, G. A., MacKenzie, F., Chishti, A. H., and Park, H. W. (2010) Phosphorylation-independent dual-site binding of the FHA domain of KIF13 mediates phosphoinositide transport via centaurin alpha1, Proc Natl Acad Sci U S A 107, 20346-20351.
  156. Su, X., Agarwal, V., Dodd, D., Bae, B., Mackie, R. I., Nair, S. K., and Cann, I. K. (2010) Mutational insights into the roles of amino acid residues in ligand binding for two closely related family 16 carbohydrate binding modules, J Biol Chem 285, 34665-34676.
  157. Stenmark, P., Dong, M., Dupuy, J., Chapman, E. R., and Stevens, R. C. (2010) Crystal structure of the botulinum neurotoxin type G binding domain: insight into cell surface binding, J Mol Biol 397, 1287-1297.
  158. Siddiqui, K. S., Poljak, A., De Francisci, D., Guerriero, G., Pilak, O., Burg, D., Raftery, M. J., Parkin, D. M., Trewhella, J., and Cavicchioli, R. (2010) A chemically modified alpha-amylase with a molten-globule state has entropically driven enhanced thermal stability, Protein Eng Des Sel 23, 769-780.
  159. Shi, F., Telesco, S. E., Liu, Y., Radhakrishnan, R., and Lemmon, M. A. (2010) ErbB3/HER3 intracellular domain is competent to bind ATP and catalyze autophosphorylation, Proc Natl Acad Sci U S A 107, 7692-7697.
  160. Shetty, N. D., Reddy, M. C., Palaninathan, S. K., Owen, J. L., and Sacchettini, J. C. (2010) Crystal structures of the apo and ATP bound Mycobacterium tuberculosis nitrogen regulatory PII protein, Protein Sci 19, 1513-1524.
  161. Shepherd, T. R., Klaus, S. M., Liu, X., Ramaswamy, S., DeMali, K. A., and Fuentes, E. J. (2010) The Tiam1 PDZ domain couples to Syndecan1 and promotes cell-matrix adhesion, J Mol Biol 398, 730-746.
  162. Sheard, L. B., Tan, X., Mao, H., Withers, J., Ben-Nissan, G., Hinds, T. R., Kobayashi, Y., Hsu, F. F., Sharon, M., Browse, J., He, S. Y., Rizo, J., Howe, G. A., and Zheng, N. (2010) Jasmonate perception by inositol-phosphate-potentiated COI1-JAZ co-receptor, Nature 468, 400-405.
  163. Sekulic, N., Bassett, E. A., Rogers, D. J., and Black, B. E. (2010) The structure of (CENP-A-H4)(2) reveals physical features that mark centromeres, Nature 467, 347-351.
  164. Scharf, L., Li, N. S., Hawk, A. J., Garzon, D., Zhang, T., Fox, L. M., Kazen, A. R., Shah, S., Haddadian, E. J., Gumperz, J. E., Saghatelian, A., Faraldo-Gomez, J. D., Meredith, S. C., Piccirilli, J. A., and Adams, E. J. (2010) The 2.5 a structure of CD1c in complex with a mycobacterial lipid reveals an open groove ideally suited for diverse antigen presentation, Immunity 33, 853-862.
  165. Sarma, G. N., Kinderman, F. S., Kim, C., von Daake, S., Chen, L., Wang, B. C., and Taylor, S. S. (2010) Structure of D-AKAP2:PKA RI complex: insights into AKAP specificity and selectivity, Structure 18, 155-166.
  166. Samara, N. L., Datta, A. B., Berndsen, C. E., Zhang, X., Yao, T., Cohen, R. E., and Wolberger, C. (2010) Structural insights into the assembly and function of the SAGA deubiquitinating module, Science 328, 1025-1029.
  167. Rosen, M. D., Venkatesan, H., Peltier, H. M., Bembenek, S. D., Kanelakis, K. C., Zhao, L. X., Leonard, B. E., Hocutt, F. M., Wu, X., Palomino, H. L., Brondstetter, T. I., Haugh, P. V., Cagnon, L., Yan, W., Liotta, L. A., Young, A., Mirzadegan, T., Shankley, N. P., Barrett, T. D., and Rabinowitz, M. H. (2010) Benzimidazole-2-pyrazole HIF Prolyl 4-Hydroxylase Inhibitors as Oral Erythropoietin Secretagogues, ACS Med. Chem. Lett. 1, 526–529.
  168. Ren, Y., Seo, H. S., Blobel, G., and Hoelz, A. (2010) Structural and functional analysis of the interaction between the nucleoporin Nup98 and the mRNA export factor Rae1, Proc Natl Acad Sci U S A 107, 10406-10411.
  169. Reddy, V. S., Natchiar, S. K., Stewart, P. L., and Nemerow, G. R. (2010) Crystal structure of human adenovirus at 3.5 A resolution, Science 329, 1071-1075.
  170. Reddy, V. S., Natchiar, S. K., Gritton, L., Mullen, T. M., Stewart, P. L., and Nemerow, G. R. (2010) Crystallization and preliminary X-ray diffraction analysis of human adenovirus, Virology 402, 209-214.
  171. Qiu, L., Pashkova, N., Walker, J. R., Winistorfer, S., Allali-Hassani, A., Akutsu, M., Piper, R., and Dhe-Paganon, S. (2010) Structure and function of the PLAA/Ufd3-p97/Cdc48 complex, J Biol Chem 285, 365-372.
  172. Qin, L., Fokine, A., O'Donnell, E., Rao, V. B., and Rossmann, M. G. (2010) Structure of the small outer capsid protein, Soc: a clamp for stabilizing capsids of T4-like phages, J Mol Biol 395, 728-741.
  173. Pentelute, B. L., Mandal, K., Gates, Z. P., Sawaya, M. R., Yeates, T. O., and Kent, S. B. (2010) Total chemical synthesis and X-ray structure of kaliotoxin by racemic protein crystallography, Chem Commun (Camb) 46, 8174-8176.
  174. Pejchal, R., Walker, L. M., Stanfield, R. L., Phogat, S. K., Koff, W. C., Poignard, P., Burton, D. R., and Wilson, I. A. (2010) Structure and function of broadly reactive antibody PG16 reveal an H3 subdomain that mediates potent neutralization of HIV-1, Proc Natl Acad Sci U S A 107, 11483-11488.
  175. Pearce, M. C., Powers, G. A., Feil, S. C., Hansen, G., Parker, M. W., and Bottomley, S. P. (2010) Identification and characterization of a misfolded monomeric serpin formed at physiological temperature, J Mol Biol 403, 459-467.
  176. Narasimhan, D., Nance, M. R., Gao, D., Ko, M. C., Macdonald, J., Tamburi, P., Yoon, D., Landry, D. M., Woods, J. H., Zhan, C. G., Tesmer, J. J., and Sunahara, R. K. (2010) Structural analysis of thermostabilizing mutations of cocaine esterase, Protein Eng Des Sel 23, 537-547.
  177. Moravcevic, K., Mendrola, J. M., Schmitz, K. R., Wang, Y. H., Slochower, D., Janmey, P. A., and Lemmon, M. A. (2010) Kinase associated-1 domains drive MARK/PAR1 kinases to membrane targets by binding acidic phospholipids, Cell 143, 966-977.
  178. Molle, V., Gulten, G., Vilcheze, C., Veyron-Churlet, R., Zanella-Cleon, I., Sacchettini, J. C., Jacobs, W. R., Jr., and Kremer, L. (2010) Phosphorylation of InhA inhibits mycolic acid biosynthesis and growth of Mycobacterium tuberculosis, Mol Microbiol 78, 1591-1605.
  179. Mileni, M., Kamtekar, S., Wood, D. C., Benson, T. E., Cravatt, B. F., and Stevens, R. C. (2010) Crystal structure of fatty acid amide hydrolase bound to the carbamate inhibitor URB597: discovery of a deacylating water molecule and insight into enzyme inactivation, J Mol Biol 400, 743-754.
  180. Mileni, M., Garfunkle, J., Ezzili, C., Kimball, F. S., Cravatt, B. F., Stevens, R. C., and Boger, D. L. (2010) X-ray crystallographic analysis of alpha-ketoheterocycle inhibitors bound to a humanized variant of fatty acid amide hydrolase, J Med Chem 53, 230-240.
  181. Lu, L., Yi, C., Jian, X., Zheng, G., and He, C. (2010) Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked protein-DNA system, Nucleic Acids Res 38, 4415-4425.
  182. Lowden, M. J., Skorupski, K., Pellegrinia, M., Chiorazzo, M. G., Taylor, R. K., and Kull, F. J. (2010) Structure of Vibrio cholerae ToxT reveals a mechanism for fatty acid regulation of virulence genes, Proc. Natl. Acad. Sci. USA 107, 2860-2865.
  183. Lorenzini, E., Singer, A., Singh, B., Lam, R., Skarina, T., Chirgadze, N. Y., Savchenko, A., and Gupta, R. S. (2010) Structure and protein-protein interaction studies on Chlamydia trachomatis protein CT670 (YscO Homolog), J Bacteriol 192, 2746-2756.
  184. Liu, X., Bushnell, D. A., Wang, D., Calero, G., and Kornberg, R. D. (2010) Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism, Science 327, 206-209.
  185. Lin, F. Y., Liu, C. I., Liu, Y. L., Zhang, Y., Wang, K., Jeng, W. Y., Ko, T. P., Cao, R., Wang, A. H., and Oldfield, E. (2010) Mechanism of action and inhibition of dehydrosqualene synthase, Proc Natl Acad Sci U S A 107, 21337-21342.
  186. Li, N., Yun, P., Nadkarni, M. A., Ghadikolaee, N. B., Nguyen, K. A., Lee, M., Hunter, N., and Collyer, C. A. (2010) Structure determination and analysis of a haemolytic gingipain adhesin domain from Porphyromonas gingivalis, Mol Microbiol 76, 861-873.
  187. Li, L., Jose, J., Xiang, Y., Kuhn, R. J., and Rossmann, M. G. (2010) Structural changes of envelope proteins during alphavirus fusion, Nature 468, 705-708.
  188. Li, L., Fu, Q., Kors, C. A., Stewart, L., Nollert, P., Laible, P. D., and Ismagilov, R. F. (2010) A Plug-Based Microfluidic System for Dispensing Lipidic Cubic Phase (LCP) Material Validated by Crystallizing Membrane Proteins in Lipidic Mesophases, Microfluid Nanofluidics 8, 789-798.
  189. Li, L., Du, W., and Ismagilov, R. F. (2010) Multiparameter screening on SlipChip used for nanoliter protein crystallization combining free interface diffusion and microbatch methods, J Am Chem Soc 132, 112-119.
  190. Li, L., Du, W., and Ismagilov, R. (2010) User-loaded SlipChip for equipment-free multiplexed nanoliter-scale experiments, J Am Chem Soc 132, 106-111.
  191. Li, J., Cui, W., and Sha, B. (2010) The structural plasticity of Tom71 for mitochondrial precursor translocations, Acta Crystallogr Sect F Struct Biol Cryst Commun 66, 985-989.
  192. Lee, L. K., Stewart, A. G., Donohoe, M., Bernal, R. A., and Stock, D. (2010) The structure of the peripheral stalk of Thermus thermophilus H+-ATPase/synthase, Nat Struct Mol Biol 17, 373-378.
  193. Lee, L. K., Ginsburg, M. A., Crovace, C., Donohoe, M., and Stock, D. (2010) Structure of the torque ring of the flagellar motor and the molecular basis for rotational switching, Nature 466, 996-1000.
  194. Lampl, N., Budai-Hadrian, O., Davydov, O., Joss, T. V., Harrop, S. J., Curmi, P. M., Roberts, T. H., and Fluhr, R. (2010) Arabidopsis AtSerpin1, crystal structure and in vivo interaction with its target protease RESPONSIVE TO DESICCATION-21 (RD21), J Biol Chem 285, 13550-13560.
  195. Kumar, J., and Mayer, M. L. (2010) Crystal Structures of the Glutamate Receptor Ion Channel GluK3 and GluK5 Amino-Terminal Domains, J Mol Biol 404, 680-696.
  196. Korostelev, A., Zhu, J., Asahara, H., and Noller, H. F. (2010) Recognition of the amber UAG stop codon by release factor RF1, EMBO J 29, 2577-2585.
  197. Kaufmann, B., Vogt, M. R., Goudsmit, J., Holdaway, H. A., Aksyuk, A. A., Chipman, P. R., Kuhn, R. J., Diamond, M. S., and Rossmann, M. G. (2010) Neutralization of West Nile virus by cross-linking of its surface proteins with Fab fragments of the human monoclonal antibody CR4354, Proc Natl Acad Sci U S A 107, 18950-18955.
  198. Kaufmann, B., Bowman, V. D., Li, Y., Szelei, J., Waddell, P. J., Tijssen, P., and Rossmann, M. G. (2010) Structure of Penaeus stylirostris densovirus, a shrimp pathogen, J Virol 84, 11289-11296.
  199. Hyde, S. J., Eckenroth, B. E., Smith, B. A., Eberley, W. A., Heintz, N. H., Jackman, J. E., and Doublie, S. (2010) tRNA(His) guanylyltransferase (THG1), a unique 3'-5' nucleotidyl transferase, shares unexpected structural homology with canonical 5'-3' DNA polymerases, Proc Natl Acad Sci U S A 107, 20305-20310.
  200. Hsia, K. C., and Hoelz, A. (2010) Crystal structure of alpha-COP in complex with epsilon-COP provides insight into the architecture of the COPI vesicular coat, Proc Natl Acad Sci U S A 107, 11271-11276.
  201. Hong, B. S., Allali-Hassani, A., Tempel, W., Finerty, P. J., Jr., Mackenzie, F., Dimov, S., Vedadi, M., and Park, H. W. (2010) Crystal structures of human choline kinase isoforms in complex with hemicholinium-3: single amino acid near the active site influences inhibitor sensitivity, J Biol Chem 285, 16330-16340.
  202. Hogg, M., Rudnicki, J., Midkiff, J., Reha-Krantz, L., Doublie, S., and Wallace, S. S. (2010) Kinetics of mismatch formation opposite lesions by the replicative DNA polymerase from bacteriophage RB69, Biochemistry 49, 2317-2325.
  203. Hofer, N., Aragao, D., and Caffrey, M. (2010) Crystallizing transmembrane peptides in lipidic mesophases, Biophys J 99, L23-25.
  204. Himanen, J. P., Yermekbayeva, L., Janes, P. W., Walker, J. R., Xu, K., Atapattu, L., Rajashankar, K. R., Mensinga, A., Lackmann, M., Nikolov, D. B., and Dhe-Paganon, S. (2010) Architecture of Eph receptor clusters, Proc Natl Acad Sci U S A 107, 10860-10865.
  205. He, X., Szewczyk, P., Karyakin, A., Evin, M., Hong, W. X., Zhang, Q., and Chang, G. (2010) Structure of a cation-bound multidrug and toxic compound extrusion transporter, Nature 467, 991-994.
  206. Goodwin, K. D., He, H., Imasaki, T., Lee, S. H., and Georgiadis, M. M. (2010) Crystal structure of the human Hsmar1-derived transposase domain in the DNA repair enzyme Metnase, Biochemistry 49, 5705-5713.
  207. Golczak, M., Kiser, P. D., Lodowski, D. T., Maeda, A., and Palczewski, K. (2010) Importance of membrane structural integrity for RPE65 retinoid isomerization activity, J Biol Chem 285, 9667-9682.
  208. Goblirsch, B. R., Streit, B. R., Dubois, J. L., and Wilmot, C. M. (2010) Structural features promoting dioxygen production by Dechloromonas aromatica chlorite dismutase, J Biol Inorg Chem 15, 879-888.
  209. Gertsman, I., Komives, E. A., and Johnson, J. E. (2010) HK97 maturation studied by crystallography and H/2H exchange reveals the structural basis for exothermic particle transitions, J Mol Biol 397, 560-574.
  210. Frearson, J. A., Brand, S., McElroy, S. P., Cleghorn, L. A., Smid, O., Stojanovski, L., Price, H. P., Guther, M. L., Torrie, L. S., Robinson, D. A., Hallyburton, I., Mpamhanga, C. P., Brannigan, J. A., Wilkinson, A. J., Hodgkinson, M., Hui, R., Qiu, W., Raimi, O. G., van Aalten, D. M., Brenk, R., Gilbert, I. H., Read, K. D., Fairlamb, A. H., Ferguson, M. A., Smith, D. F., and Wyatt, P. G. (2010) N-myristoyltransferase inhibitors as new leads to treat sleeping sickness, Nature 464, 728-732.
  211. Faucher, F., Wallace, S. S., and Doublie, S. (2010) The C-terminal lysine of Ogg2 DNA glycosylases is a major molecular determinant for guanine/8-oxoguanine distinction, J Mol Biol 397, 46-56.
  212. Eren, E., Murphy, M., Goguen, J., and van den Berg, B. (2010) An active site water network in the plasminogen activator pla from Yersinia pestis, Structure 18, 809-818.
  213. Drage, M. G., Tsai, H. C., Pecora, N. D., Cheng, T. Y., Arida, A. R., Shukla, S., Rojas, R. E., Seshadri, C., Moody, D. B., Boom, W. H., Sacchettini, J. C., and Harding, C. V. (2010) Mycobacterium tuberculosis lipoprotein LprG (Rv1411c) binds triacylated glycolipid agonists of Toll-like receptor 2, Nat Struct Mol Biol 17, 1088-1095.
  214. Doores, K. J., Fulton, Z., Hong, V., Patel, M. K., Scanlan, C. N., Wormald, M. R., Finn, M. G., Burton, D. R., Wilson, I. A., and Davis, B. G. (2010) A nonself sugar mimic of the HIV glycan shield shows enhanced antigenicity, Proc Natl Acad Sci U S A 107, 17107-17112.
  215. Dong, J., Thompson, A. A., Fan, Y., Lou, J., Conrad, F., Ho, M., Pires-Alves, M., Wilson, B. A., Stevens, R. C., and Marks, J. D. (2010) A single-domain llama antibody potently inhibits the enzymatic activity of botulinum neurotoxin by binding to the non-catalytic alpha-exosite binding region, J Mol Biol 397, 1106-1118.
  216. Dhakshnamoorthy, B., Raychaudhury, S., Blachowicz, L., and Roux, B. (2010) Cation-selective pathway of OmpF porin revealed by anomalous X-ray diffraction, J Mol Biol 396, 293-300.
  217. Del Rizzo, P. A., Couture, J. F., Dirk, L. M., Strunk, B. S., Roiko, M. S., Brunzelle, J. S., Houtz, R. L., and Trievel, R. C. (2010) SET7/9 catalytic mutants reveal the role of active site water molecules in lysine multiple methylation, J Biol Chem 285, 31849-31858.
  218. Day, J. E., Hall, T., Pegg, L. E., Benson, T. E., Hausmann, J., and Kamtekar, S. (2010) Crystallization and preliminary X-ray diffraction analysis of rat autotaxin, Acta Crystallogr Sect F Struct Biol Cryst Commun 66, 1127-1129.
  219. Cuello, L. G., Jogini, V., Cortes, D. M., and Perozo, E. (2010) Structural mechanism of C-type inactivation in K(+) channels, Nature 466, 203-208.
  220. Cuello, L. G., Jogini, V., Cortes, D. M., Pan, A. C., Gagnon, D. G., Dalmas, O., Cordero-Morales, J. F., Chakrapani, S., Roux, B., and Perozo, E. (2010) Structural basis for the coupling between activation and inactivation gates in K(+) channels, Nature 466, 272-275.
  221. Cieslak, J. A., Focia, P. J., and Gross, A. (2010) Electron spin-echo envelope modulation (ESEEM) reveals water and phosphate interactions with the KcsA potassium channel, Biochemistry 49, 1486-1494.
  222. Choi, S., Reixach, N., Connelly, S., Johnson, S. M., Wilson, I. A., and Kelly, J. W. (2010) A substructure combination strategy to create potent and selective transthyretin kinetic stabilizers that prevent amyloidogenesis and cytotoxicity, J Am Chem Soc 132, 1359-1370.
  223. Choi, S., Connelly, S., Reixach, N., Wilson, I. A., and Kelly, J. W. (2010) Chemoselective small molecules that covalently modify one lysine in a non-enzyme protein in plasma, Nat Chem Biol 6, 133-139.
  224. Chiu, H. J., Bakolitsa, C., Skerra, A., Lomize, A., Carlton, D., Miller, M. D., Krishna, S. S., Abdubek, P., Astakhova, T., Axelrod, H. L., Clayton, T., Deller, M. C., Duan, L., Feuerhelm, J., Grant, J. C., Grzechnik, S. K., Han, G. W., Jaroszewski, L., Jin, K. K., Klock, H. E., Knuth, M. W., Kozbial, P., Kumar, A., Marciano, D., McMullan, D., Morse, A. T., Nigoghossian, E., Okach, L., Paulsen, J., Reyes, R., Rife, C. L., van den Bedem, H., Weekes, D., Xu, Q., Hodgson, K. O., Wooley, J., Elsliger, M. A., Deacon, A. M., Godzik, A., Lesley, S. A., and Wilson, I. A. (2010) Structure of the first representative of Pfam family PF09410 (DUF2006) reveals a structural signature of the calycin superfamily that suggests a role in lipid metabolism, Acta Crystallogr Sect F Struct Biol Cryst Commun 66, 1153-1159.
  225. Chien, E. Y., Liu, W., Zhao, Q., Katritch, V., Han, G. W., Hanson, M. A., Shi, L., Newman, A. H., Javitch, J. A., Cherezov, V., and Stevens, R. C. (2010) Structure of the human dopamine D3 receptor in complex with a D2/D3 selective antagonist, Science 330, 1091-1095.
  226. Cherezov, V., Abola, E., and Stevens, R. C. (2010) Recent progress in the structure determination of GPCRs, a membrane protein family with high potential as pharmaceutical targets, Methods Mol Biol 654, 141-168.
  227. Chen, J. H., Yajima, R., Chadalavada, D. M., Chase, E., Bevilacqua, P. C., and Golden, B. L. (2010) A 1.9 A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage, Biochemistry 49, 6508-6518.
  228. Chen, J., Villanueva, N., Rould, M. A., and Morrical, S. W. (2010) Insights into the mechanism of Rad51 recombinase from the structure and properties of a filament interface mutant, Nucleic Acids Res 38, 4889-4906.
  229. Chen, H., Yi, C., Zhang, J., Zhang, W., Ge, Z., Yang, C. G., and He, C. (2010) Structural insight into the oxidation-sensing mechanism of the antibiotic resistance of regulator MexR, EMBO Rep.
  230. Chandramouli, S., Joseph, J. S., Daudenarde, S., Gatchalian, J., Cornillez-Ty, C., and Kuhn, P. (2010) Serotype-Specific Structural Differences in the Protease-Cofactor Complexes of the Dengue Virus Family, J. Virol. 84, 3059-3067.
  231. Burgos, P. V., Mardones, G. A., Rojas, A. L., daSilva, L. L., Prabhu, Y., Hurley, J. H., and Bonifacino, J. S. (2010) Sorting of the Alzheimer's disease amyloid precursor protein mediated by the AP-4 complex, Dev Cell 18, 425-436.
  232. Brandt, G. S., Kneen, M. M., Petsko, G. A., Ringe, D., and McLeish, M. J. (2010) Active-site engineering of benzaldehyde lyase shows that a point mutation can confer both new reactivity and susceptibility to mechanism-based inhibition, J Am Chem Soc 132, 438-439.
  233. Bowman, B. R., Lee, S., Wang, S., and Verdine, G. L. (2010) Structure of Escherichia coli AlkA in Complex with Undamaged DNA, J Biol Chem 285, 35783-35791.
  234. Boudreaux, D. A., Maiti, T. K., Davies, C. W., and Das, C. (2010) Ubiquitin vinyl methyl ester binding orients the misaligned active site of the ubiquitin hydrolase UCHL1 into productive conformation, Proc Natl Acad Sci U S A 107, 9117-9122.
  235. Bokoch, M. P., Zou, Y., Rasmussen, S. G., Liu, C. W., Nygaard, R., Rosenbaum, D. M., Fung, J. J., Choi, H. J., Thian, F. S., Kobilka, T. S., Puglisi, J. D., Weis, W. I., Pardo, L., Prosser, R. S., Mueller, L., and Kobilka, B. K. (2010) Ligand-specific regulation of the extracellular surface of a G-protein-coupled receptor, Nature 463, 108-112.
  236. Boal, A. K., Cotruvo, J. A., Jr., Stubbe, J., and Rosenzweig, A. C. (2010) Structural basis for activation of class Ib ribonucleotide reductase, Science 329, 1526-1530.
  237. Biswas, T., Zolova, O. E., Lombo, F., de la Calle, F., Salas, J. A., Tsodikov, O. V., and Garneau-Tsodikova, S. (2010) A new scaffold of an old protein fold ensures binding to the bisintercalator thiocoraline, J Mol Biol 397, 495-507.
  238. Biertumpfel, C., Zhao, Y., Kondo, Y., Ramon-Maiques, S., Gregory, M., Lee, J. Y., Masutani, C., Lehmann, A. R., Hanaoka, F., and Yang, W. (2010) Structure and mechanism of human DNA polymerase eta, Nature 465, 1044-1048.
  239. Biancalana, M., Makabe, K., and Koide, S. (2010) Minimalist design of water-soluble cross-beta architecture, Proc Natl Acad Sci U S A 107, 3469-3474.
  240. Baskaran, S., Roach, P. J., DePaoli-Roach, A. A., and Hurley, T. D. (2010) Structural basis for glucose-6-phosphate activation of glycogen synthase, Proc Natl Acad Sci U S A 107, 17563-17568.
  241. Bakolitsa, C., Kumar, A., Carlton, D., Miller, M. D., Krishna, S. S., Abdubek, P., Astakhova, T., Axelrod, H. L., Chiu, H. J., Clayton, T., Deller, M. C., Duan, L., Elsliger, M. A., Feuerhelm, J., Grzechnik, S. K., Grant, J. C., Han, G. W., Jaroszewski, L., Jin, K. K., Klock, H. E., Knuth, M. W., Kozbial, P., Marciano, D., McMullan, D., Morse, A. T., Nigoghossian, E., Okach, L., Oommachen, S., Paulsen, J., Reyes, R., Rife, C. L., Tien, H. J., Trout, C. V., van den Bedem, H., Weekes, D., Xu, Q., Hodgson, K. O., Wooley, J., Deacon, A. M., Godzik, A., Lesley, S. A., and Wilson, I. A. (2010) Structure of LP2179, the first representative of Pfam family PF08866, suggests a new fold with a role in amino-acid metabolism, Acta Crystallogr Sect F Struct Biol Cryst Commun 66, 1205-1210.
  242. Arsenieva, D., Symersky, J., Wang, Y., Pagadala, V., and Mueller, D. M. (2010) Crystal structures of mutant forms of the yeast F1 ATPase reveal two modes of uncoupling, J Biol Chem.
  243. Arachea, B. T., Liu, X., Pavlovsky, A. G., and Viola, R. E. (2010) Expansion of the aspartate beta-semialdehyde dehydrogenase family: the first structure of a fungal ortholog, Acta Crystallogr D Biol Crystallogr 66, 205-212.
  244. Alvarado, D., Klein, D. E., and Lemmon, M. A. (2010) Structural basis for negative cooperativity in growth factor binding to an EGF receptor, Cell 142, 568-579.
  245. Aller, P., Ye, Y., Wallace, S. S., Burrows, C. J., and Doublie, S. (2010) Crystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoin, Biochemistry 49, 2502-2509.
  246. Agarwal, S., Hong, D., Desai, N. K., Sazinsky, M. H., Arguello, J. M., and Rosenzweig, A. C. (2010) Structure and interactions of the C-terminal metal binding domain of Archaeoglobus fulgidus CopA, Proteins 78, 2450-2458.
  247. Abu Tarboush, N., Jensen, L. M., Feng, M., Tachikawa, H., Wilmot, C. M., and Davidson, V. L. (2010) Functional importance of tyrosine 294 and the catalytic selectivity for the bis-Fe(IV) state of MauG revealed by replacement of this axial heme ligand with histidine, Biochemistry 49, 9783-9791.
  248. Zhu, D., Stumpf, C. R., Krahn, J. M., Wickens, M., and Hall, T. M. (2009) A 5' cytosine binding pocket in Puf3p specifies regulation of mitochondrial mRNAs, Proc Natl Acad Sci U S A 106, 20192-20197.
  249. Yu, I. M., Holdaway, H. A., Chipman, P. R., Kuhn, R. J., Rossmann, M. G., and Chen, J. (2009) Association of the pr peptides with dengue virus at acidic pH blocks membrane fusion, J Virol 83, 12101-12107.
  250. Yeh, J. I., Kettering, R., Saxl, R., Bourand, A., Darbon, E., Joly, N., Briozzo, P., and Deutscher, J. (2009) Structural characterizations of glycerol kinase: unraveling phosphorylation-induced long-range activation, Biochemistry 48, 346-356.
  251. Xu, Q., Rife, C. L., Carlton, D., Miller, M. D., Krishna, S. S., Elsliger, M. A., Abdubek, P., Astakhova, T., Chiu, H. J., Clayton, T., Duan, L., Feuerhelm, J., Grzechnik, S. K., Hale, J., Han, G. W., Jaroszewski, L., Jin, K. K., Klock, H. E., Knuth, M. W., Kumar, A., McMullan, D., Morse, A. T., Nigoghossian, E., Okach, L., Oommachen, S., Paulsen, J., Reyes, R., van den Bedem, H., Hodgson, K. O., Wooley, J., Deacon, A. M., Godzik, A., Lesley, S. A., and Wilson, I. A. (2009) Crystal structure of a novel archaeal AAA+ ATPase SSO1545 from Sulfolobus solfataricus, Proteins 74, 1041-1049.
  252. Xiang, Y., Leiman, P. G., Li, L., Grimes, S., Anderson, D. L., and Rossmann, M. G. (2009) Crystallographic insights into the autocatalytic assembly mechanism of a bacteriophage tail spike, Mol Cell 34, 375-386.
  253. Wood, C. S., Schmitz, K. R., Bessman, N. J., Setty, T. G., Ferguson, K. M., and Burd, C. G. (2009) PtdIns4P recognition by Vps74/GOLPH3 links PtdIns 4-kinase signaling to retrograde Golgi trafficking, J Cell Biol 187, 967-975.
  254. Wang, Z., Zhou, X. E., Motola, D. L., Gao, X., Suino-Powell, K., Conneely, A., Ogata, C., Sharma, K. K., Auchus, R. J., Lok, J. B., Hawdon, J. M., Kliewer, S. A., Xu, H. E., and Mangelsdorf, D. J. (2009) Identification of the nuclear receptor DAF-12 as a therapeutic target in parasitic nematodes, Proc Natl Acad Sci U S A 106, 9138-9143.
  255. Wang, W., Yang, Y., Gao, Y., Xu, Q., Wang, F., Zhu, S., Old, W., Resing, K., Ahn, N., Lei, M., and Liu, X. (2009) Structural and mechanistic insights into Mps1 kinase activation, J Cell Mol Med 13, 1679-1694.
  256. Uysal, S., Vasquez, V., Tereshko, V., Esaki, K., Fellouse, F. A., Sidhu, S. S., Koide, S., Perozo, E., and Kossiakoff, A. (2009) Crystal structure of full-length KcsA in its closed conformation, Proc Natl Acad Sci U S A 106, 6644-6649.
  257. Ukaegbu, U. E., and Rosenzweig, A. C. (2009) Structure of the redox sensor domain of Methylococcus capsulatus (Bath) MmoS, Biochemistry 48, 2207-2215.
  258. Tong, Y., Tempel, W., Nedyalkova, L., Mackenzie, F., and Park, H. W. (2009) Crystal structure of the N-acetylmannosamine kinase domain of GNE, PLoS One 4, e7165.
  259. Tong, Y., Hota, P. K., Penachioni, J. Y., Hamaneh, M. B., Kim, S., Alviani, R. S., Shen, L., He, H., Tempel, W., Tamagnone, L., Park, H. W., and Buck, M. (2009) Structure and function of the intracellular region of the plexin-b1 transmembrane receptor, J Biol Chem 284, 35962-35972.
  260. Tempel, W., Wu, H., Dombrovsky, L., Zeng, H., Loppnau, P., Zhu, H., Plotnikov, A. N., and Bochkarev, A. (2009) An intact SAM-dependent methyltransferase fold is encoded by the human endothelin-converting enzyme-2 gene, Proteins 74, 789-793.
  261. Sun, Q., Kuty, G. F., Arockiasamy, A., Xu, M., Young, R., and Sacchettini, J. C. (2009) Regulation of a muralytic enzyme by dynamic membrane topology, Nat Struct Mol Biol 16, 1192-1194.
  262. Sun, D., Xu, H., Wijerathna, S. R., Dealwis, C., and Lee, R. E. (2009) Structure-Based Design, Synthesis, and Evaluation of 2'-(2-Hydroxyethyl)-2'-deoxyadenosine and the 5'-Diphosphate Derivative as Ribonucleotide Reductase Inhibitors, ChemMedChem 4, 1649-1656.
  263. Shen, A., Higgins, D. E., and Panne, D. (2009) Recognition of AT-rich DNA binding sites by the MogR repressor, Structure 17, 769-777.
  264. Seo, H. S., Ma, Y., Debler, E. W., Wacker, D., Kutik, S., Blobel, G., and Hoelz, A. (2009) Structural and functional analysis of Nup120 suggests ring formation of the Nup84 complex, Proc Natl Acad Sci U S A 106, 14281-14286.
  265. Sanki, A. K., Boucau, J., Umesiri, F. E., Ronning, D. R., and Sucheck, S. J. (2009) Design, synthesis and biological evaluation of sugar-derived esters, alpha-ketoesters and alpha-ketoamides as inhibitors for Mycobacterium tuberculosis antigen 85C, Mol Biosyst 5, 945-956.
  266. Reddy, M. C., Palaninathan, S. K., Bruning, J. B., Thurman, C., Smith, D., and Sacchettini, J. C. (2009) Structural insights into the mechanism of the allosteric transitions of Mycobacterium tuberculosis cAMP receptor protein, J Biol Chem 284, 36581-36591.
  267. Qiu, W., Wernimont, A., Tang, K., Taylor, S., Lunin, V., Schapira, M., Fentress, S., Hui, R., and Sibley, L. D. (2009) Novel structural and regulatory features of rhoptry secretory kinases in Toxoplasma gondii, EMBO J 28, 969-979.
  268. Qin, L., Liu, J., Mills, D. A., Proshlyakov, D. A., Hiser, C., and Ferguson-Miller, S. (2009) Redox-dependent conformational changes in cytochrome C oxidase suggest a gating mechanism for proton uptake, Biochemistry 48, 5121-5130.
  269. Poor, C. B., Chen, P. R., Duguid, E., Rice, P. A., and He, C. (2009) Crystal structures of the reduced, sulfenic acid, and mixed disulfide forms of SarZ, a redox active global regulator in Staphylococcus aureus, J Biol Chem 284, 23517-23524.
  270. Ponomarenko, N. S., Li, L., Marino, A. R., Tereshko, V., Ostafin, A., Popova, J. A., Bylina, E. J., Ismagilov, R. F., and Norris, J. R., Jr. (2009) Structural and spectropotentiometric analysis of Blastochloris viridis heterodimer mutant reaction center, Biochim Biophys Acta 1788, 1822-1831.
  271. Pletnev, S., Morozova, K. S., Verkhusha, V. V., and Dauter, Z. (2009) Rotational order-disorder structure of fluorescent protein FP480, Acta Crystallogr D Biol Crystallogr 65, 906-912.
  272. Piepenbrink, K. H., Borbulevych, O. Y., Sommese, R. F., Clemens, J., Armstrong, K. M., Desmond, C., Do, P., and Baker, B. M. (2009) Fluorine substitutions in an antigenic peptide selectively modulate T-cell receptor binding in a minimally perturbing manner, Biochem J 423, 353-361.
  273. Pellicci, D. G., Patel, O., Kjer-Nielsen, L., Pang, S. S., Sullivan, L. C., Kyparissoudis, K., Brooks, A. G., Reid, H. H., Gras, S., Lucet, I. S., Koh, R., Smyth, M. J., Mallevaey, T., Matsuda, J. L., Gapin, L., McCluskey, J., Godfrey, D. I., and Rossjohn, J. (2009) Differential recognition of CD1d-alpha-galactosyl ceramide by the V beta 8.2 and V beta 7 semi-invariant NKT T cell receptors, Immunity 31, 47-59.
  274. Payne, K., Sun, Q., Sacchettini, J., and Hatfull, G. F. (2009) Mycobacteriophage Lysin B is a novel mycolylarabinogalactan esterase, Mol Microbiol 73, 367-381.
  275. Nagy, V., Hsia, K. C., Debler, E. W., Kampmann, M., Davenport, A. M., Blobel, G., and Hoelz, A. (2009) Structure of a trimeric nucleoporin complex reveals alternate oligomerization states, Proc Natl Acad Sci U S A 106, 17693-17698.
  276. Mileni, M., Garfunkle, J., DeMartino, J. K., Cravatt, B. F., Boger, D. L., and Stevens, R. C. (2009) Binding and inactivation mechanism of a humanized fatty acid amide hydrolase by alpha-ketoheterocycle inhibitors revealed from cocrystal structures, J Am Chem Soc 131, 10497-10506.
  277. McCoy, J. G., Johnson, H. D., Singh, S., Bingman, C. A., Lei, I. K., Thorson, J. S., and Phillips, G. N., Jr. (2009) Structural characterization of CalO2: a putative orsellinic acid P450 oxidase in the calicheamicin biosynthetic pathway, Proteins 74, 50-60.
  278. Mateja, A., Szlachcic, A., Downing, M. E., Dobosz, M., Mariappan, M., Hegde, R. S., and Keenan, R. J. (2009) The structural basis of tail-anchored membrane protein recognition by Get3, Nature 461, 361-366.
  279. Mandal, K., Pentelute, B. L., Tereshko, V., Thammavongsa, V., Schneewind, O., Kossiakoff, A. A., and Kent, S. B. (2009) Racemic crystallography of synthetic protein enantiomers used to determine the X-ray structure of plectasin by direct methods, Protein Sci 18, 1146-1154.
  280. Mandal, K., Pentelute, B. L., Tereshko, V., Kossiakoff, A. A., and Kent, S. B. (2009) X-ray structure of native scorpion toxin BmBKTx1 by racemic protein crystallography using direct methods, J Am Chem Soc 131, 1362-1363.
  281. Malecka, K. A., Ho, W. C., and Marmorstein, R. (2009) Crystal structure of a p53 core tetramer bound to DNA, Oncogene 28, 325-333.
  282. Madauss, K. P., Burkhart, W. A., Consler, T. G., Cowan, D. J., Gottschalk, W. K., Miller, A. B., Short, S. A., Tran, T. B., and Williams, S. P. (2009) The human ACC2 CT-domain C-terminus is required for full functionality and has a novel twist, Acta Crystallogr D Biol Crystallogr 65, 449-461.
  283. Macdonald, W. A., Chen, Z., Gras, S., Archbold, J. K., Tynan, F. E., Clements, C. S., Bharadwaj, M., Kjer-Nielsen, L., Saunders, P. M., Wilce, M. C., Crawford, F., Stadinsky, B., Jackson, D., Brooks, A. G., Purcell, A. W., Kappler, J. W., Burrows, S. R., Rossjohn, J., and McCluskey, J. (2009) T cell allorecognition via molecular mimicry, Immunity 31, 897-908.
  284. Loughlin, F. E., Mansfield, R. E., Vaz, P. M., McGrath, A. P., Setiyaputra, S., Gamsjaeger, R., Chen, E. S., Morris, B. J., Guss, J. M., and Mackay, J. P. (2009) The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences, Proc Natl Acad Sci U S A 106, 5581-5586.
  285. Liu, L., Marwitz, A. J., Matthews, B. W., and Liu, S. Y. (2009) Boron mimetics: 1,2-dihydro-1,2-azaborines bind inside a nonpolar cavity of T4 lysozyme, Angew Chem Int Ed Engl 48, 6817-6819.
  286. Lieberman, R. L., D'Aquino J, A., Ringe, D., and Petsko, G. A. (2009) Effects of pH and iminosugar pharmacological chaperones on lysosomal glycosidase structure and stability, Biochemistry 48, 4816-4827.
  287. Lawton, T. J., Sayavedra-Soto, L. A., Arp, D. J., and Rosenzweig, A. C. (2009) Crystal structure of a two-domain multicopper oxidase: implications for the evolution of multicopper blue proteins, J Biol Chem 284, 10174-10180.
  288. Landon, M. R., Lieberman, R. L., Hoang, Q. Q., Ju, S., Caaveiro, J. M., Orwig, S. D., Kozakov, D., Brenke, R., Chuang, G. Y., Beglov, D., Vajda, S., Petsko, G. A., and Ringe, D. (2009) Detection of ligand binding hot spots on protein surfaces via fragment-based methods: application to DJ-1 and glucocerebrosidase, J Comput Aided Mol Des.
  289. Kreutz, J. E., Li, L., Roach, L. S., Hatakeyama, T., and Ismagilov, R. F. (2009) Laterally mobile, functionalized self-assembled monolayers at the fluorous-aqueous interface in a plug-based microfluidic system: characterization and testing with membrane protein crystallization, J Am Chem Soc 131, 6042-6043.
  290. Kiser, P. D., Golczak, M., Lodowski, D. T., Chance, M. R., and Palczewski, K. (2009) Crystal structure of native RPE65, the retinoid isomerase of the visual cycle, Proc Natl Acad Sci U S A 106, 17325-17330.
  291. Khare, D., Oldham, M. L., Orelle, C., Davidson, A. L., and Chen, J. (2009) Alternating access in maltose transporter mediated by rigid-body rotations, Mol Cell 33, 528-536.
  292. Jacques, D. A., Streamer, M., Rowland, S. L., King, G. F., Guss, J. M., Trewhella, J., and Langley, D. B. (2009) Structure of the sporulation histidine kinase inhibitor Sda from Bacillus subtilis and insights into its solution state, Acta Crystallogr D Biol Crystallogr 65, 574-581.
  293. Huang, Y., Ji, L., Huang, Q., Vassylyev, D. G., Chen, X., and Ma, J. B. (2009) Structural insights into mechanisms of the small RNA methyltransferase HEN1, Nature 461, 823-827.
  294. Hu, J., Li, J., Qian, X., Denic, V., and Sha, B. (2009) The crystal structures of yeast Get3 suggest a mechanism for tail-anchored protein membrane insertion, PLoS One 4, e8061.
  295. Guilfoyle, A., Maher, M. J., Rapp, M., Clarke, R., Harrop, S., and Jormakka, M. (2009) Structural basis of GDP release and gating in G protein coupled Fe2+ transport, EMBO J 28, 2677-2685.
  296. Gertsman, I., Gan, L., Guttman, M., Lee, K., Speir, J. A., Duda, R. L., Hendrix, R. W., Komives, E. A., and Johnson, J. E. (2009) An unexpected twist in viral capsid maturation, Nature 458, 646-650.
  297. Freundlich, J. S., Wang, F., Vilcheze, C., Gulten, G., Langley, R., Schiehser, G. A., Jacobus, D. P., Jacobs, W. R., Jr., and Sacchettini, J. C. (2009) Triclosan derivatives: towards potent inhibitors of drug-sensitive and drug-resistant Mycobacterium tuberculosis, ChemMedChem 4, 241-248.
  298. Faucher, F., Robey-Bond, S. M., Wallace, S. S., and Doublie, S. (2009) Structural characterization of Clostridium acetobutylicum 8-oxoguanine DNA glycosylase in its apo form and in complex with 8-oxodeoxyguanosine, J Mol Biol 387, 669-679.
  299. Faucher, F., Duclos, S., Bandaru, V., Wallace, S. S., and Doublie, S. (2009) Crystal structures of two archaeal 8-oxoguanine DNA glycosylases provide structural insight into guanine/8-oxoguanine distinction, Structure 17, 703-712.
  300. Fang, Y., Jayaram, H., Shane, T., Kolmakova-Partensky, L., Wu, F., Williams, C., Xiong, Y., and Miller, C. (2009) Structure of a prokaryotic virtual proton pump at 3.2 A resolution, Nature 460, 1040-1043.
  301. Eryilmaz, J., Pan, P., Amaya, M. F., Allali-Hassani, A., Dong, A., Adams-Cioaba, M. A., Mackenzie, F., Vedadi, M., and Min, J. (2009) Structural studies of a four-MBT repeat protein MBTD1, PLoS One 4, e7274.
  302. Ely, L. K., Fischer, S., and Garcia, K. C. (2009) Structural basis of receptor sharing by interleukin 17 cytokines, Nat Immunol 10, 1245-1251.
  303. Ekiert, D. C., Bhabha, G., Elsliger, M. A., Friesen, R. H., Jongeneelen, M., Throsby, M., Goudsmit, J., and Wilson, I. A. (2009) Antibody recognition of a highly conserved influenza virus epitope, Science 324, 246-251.
  304. Dementieva, I. S., Tereshko, V., McCrossan, Z. A., Solomaha, E., Araki, D., Xu, C., Grigorieff, N., and Goldstein, S. A. (2009) Pentameric assembly of potassium channel tetramerization domain-containing protein 5, J Mol Biol 387, 175-191.
  305. Debler, E. W., Muller, R., Hilvert, D., and Wilson, I. A. (2009) An aspartate and a water molecule mediate efficient acid-base catalysis in a tailored antibody pocket, Proc Natl Acad Sci U S A 106, 18539-18544.
  306. Das, D., Kozbial, P., Axelrod, H. L., Miller, M. D., McMullan, D., Krishna, S. S., Abdubek, P., Acosta, C., Astakhova, T., Burra, P., Carlton, D., Chen, C., Chiu, H. J., Clayton, T., Deller, M. C., Duan, L., Elias, Y., Elsliger, M. A., Ernst, D., Farr, C., Feuerhelm, J., Grzechnik, A., Grzechnik, S. K., Hale, J., Han, G. W., Jaroszewski, L., Jin, K. K., Johnson, H. A., Klock, H. E., Knuth, M. W., Kumar, A., Marciano, D., Morse, A. T., Murphy, K. D., Nigoghossian, E., Nopakun, A., Okach, L., Oommachen, S., Paulsen, J., Puckett, C., Reyes, R., Rife, C. L., Sefcovic, N., Sudek, S., Tien, H., Trame, C., Trout, C. V., van den Bedem, H., Weekes, D., White, A., Xu, Q., Hodgson, K. O., Wooley, J., Deacon, A. M., Godzik, A., Lesley, S. A., and Wilson, I. A. (2009) Crystal structure of a novel Sm-like protein of putative cyanophage origin at 2.60 A resolution, Proteins 75, 296-307.
  307. D'Aquino, J. A., Denninger, A. R., Moulin, A. G., D'Aquino, K. E., and Ringe, D. (2009) Decreased sensitivity to changes in the concentration of metal ions as the basis for the hyperactivity of DtxR(E175K), J Mol Biol 390, 112-123.
  308. Clark, K. R., and Walsh, S. T. (2009) Crystal structure of a 3B3 variant--a broadly neutralizing HIV-1 scFv antibody, Protein Sci 18, 2429-2441.
  309. Chruszcz, M., Chapman, M. D., Vailes, L. D., Stura, E. A., Saint-Remy, J. M., Minor, W., and Pomes, A. (2009) Crystal structures of mite allergens Der f 1 and Der p 1 reveal differences in surface-exposed residues that may influence antibody binding, J Mol Biol 386, 520-530.
  310. Choi, H. J., Gross, J. C., Pokutta, S., and Weis, W. I. (2009) Interactions of plakoglobin and beta-catenin with desmosomal cadherins: basis of selective exclusion of alpha- and beta-catenin from desmosomes, J Biol Chem 284, 31776-31788.
  311. Chakraborty, S., Nemeria, N. S., Balakrishnan, A., Brandt, G. S., Kneen, M. M., Yep, A., McLeish, M. J., Kenyon, G. L., Petsko, G. A., Ringe, D., and Jordan, F. (2009) Detection and time course of formation of major thiamin diphosphate-bound covalent intermediates derived from a chromophoric substrate analogue on benzoylformate decarboxylase, Biochemistry 48, 981-994.
  312. Bulfer, S. L., Scott, E. M., Couture, J. F., Pillus, L., and Trievel, R. C. (2009) Crystal structure and functional analysis of homocitrate synthase, an essential enzyme in lysine biosynthesis, J Biol Chem 284, 35769-35780.
  313. Budzik, J. M., Poor, C. B., Faull, K. F., Whitelegge, J. P., He, C., and Schneewind, O. (2009) Intramolecular amide bonds stabilize pili on the surface of bacilli, Proc Natl Acad Sci U S A 106, 19992-19997.
  314. Brent, M. M., Iwata, A., Carten, J., Zhao, K., and Marmorstein, R. (2009) Structure and biochemical characterization of protein acetyltransferase from Sulfolobus solfataricus, J Biol Chem 284, 19412-19419.
  315. Brandt, G. S., Kneen, M. M., Chakraborty, S., Baykal, A. T., Nemeria, N., Yep, A., Ruby, D. I., Petsko, G. A., Kenyon, G. L., McLeish, M. J., Jordan, F., and Ringe, D. (2009) Snapshot of a reaction intermediate: analysis of benzoylformate decarboxylase in complex with a benzoylphosphonate inhibitor, Biochemistry 48, 3247-3257.
  316. Boal, A. K., and Rosenzweig, A. C. (2009) Crystal structures of cisplatin bound to a human copper chaperone, J Am Chem Soc 131, 14196-14197.
  317. Biancalana, M., Makabe, K., Koide, A., and Koide, S. (2009) Molecular mechanism of thioflavin-T binding to the surface of beta-rich peptide self-assemblies, J Mol Biol 385, 1052-1063.
  318. Belogurov, G. A., Vassylyeva, M. N., Sevostyanova, A., Appleman, J. R., Xiang, A. X., Lira, R., Webber, S. E., Klyuyev, S., Nudler, E., Artsimovitch, I., and Vassylyev, D. G. (2009) Transcription inactivation through local refolding of the RNA polymerase structure, Nature 457, 332-335.
  319. Ang, W. H., Parker, L. J., De Luca, A., Juillerat-Jeanneret, L., Morton, C. J., Lo Bello, M., Parker, M. W., and Dyson, P. J. (2009) Rational design of an organometallic glutathione transferase inhibitor, Angew Chem Int Ed Engl 48, 3854-3857.
  320. Alvarado, D., Klein, D. E., and Lemmon, M. A. (2009) ErbB2 resembles an autoinhibited invertebrate epidermal growth factor receptor, Nature 461, 287-291.
  321. Aller, S. G., Yu, J., Ward, A., Weng, Y., Chittaboina, S., Zhuo, R., Harrell, P. M., Trinh, Y. T., Zhang, Q., Urbatsch, I. L., and Chang, G. (2009) Structure of P-glycoprotein reveals a molecular basis for poly-specific drug binding, Science 323, 1718-1722.
  322. Alam, A., and Jiang, Y. (2009) High-resolution structure of the open NaK channel, Nat Struct Mol Biol 16, 30-34.
  323. Aksyuk, A. A., Leiman, P. G., Shneider, M. M., Mesyanzhinov, V. V., and Rossmann, M. G. (2009) The structure of gene product 6 of bacteriophage T4, the hinge-pin of the baseplate, Structure 17, 800-808.
  324. Aksyuk, A. A., Leiman, P. G., Kurochkina, L. P., Shneider, M. M., Kostyuchenko, V. A., Mesyanzhinov, V. V., and Rossmann, M. G. (2009) The tail sheath structure of bacteriophage T4: a molecular machine for infecting bacteria, EMBO J 28, 821-829.
  325. Zhang, C., Bitto, E., Goff, R. D., Singh, S., Bingman, C. A., Griffith, B. R., Albermann, C., Phillips, G. N., Jr., and Thorson, J. S. (2008) Biochemical and structural insights of the early glycosylation steps in calicheamicin biosynthesis, Chem Biol 15, 842-853.
  326. Yu, I. M., Zhang, W., Holdaway, H. A., Li, L., Kostyuchenko, V. A., Chipman, P. R., Kuhn, R. J., Rossmann, M. G., and Chen, J. (2008) Structure of the immature dengue virus at low pH primes proteolytic maturation, Science 319, 1834-1837.
  327. Ye, J. D., Tereshko, V., Frederiksen, J. K., Koide, A., Fellouse, F. A., Sidhu, S. S., Koide, S., Kossiakoff, A. A., and Piccirilli, J. A. (2008) Synthetic antibodies for specific recognition and crystallization of structured RNA, Proc Natl Acad Sci U S A 105, 82-87.
  328. Yatsunyk, L. A., Easton, J. A., Kim, L. R., Sugarbaker, S. A., Bennett, B., Breece, R. M., Vorontsov, II, Tierney, D. L., Crowder, M. W., and Rosenzweig, A. C. (2008) Structure and metal binding properties of ZnuA, a periplasmic zinc transporter from Escherichia coli, J Biol Inorg Chem 13, 271-288.
  329. Yang, C. G., Yi, C., Duguid, E. M., Sullivan, C. T., Jian, X., Rice, P. A., and He, C. (2008) Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA, Nature 452, 961-965.
  330. Xie, P., Williams, D. S., Atilla-Gokcumen, G. E., Milk, L., Xiao, M., Smalley, K. S., Herlyn, M., Meggers, E., and Marmorstein, R. (2008) Structure-based design of an organoruthenium phosphatidyl-inositol-3-kinase inhibitor reveals a switch governing lipid kinase potency and selectivity, ACS Chem Biol 3, 305-316.
  331. Xiao, J., Xia, H., Zhou, J., Azmi, I. F., Davies, B. A., Katzmann, D. J., and Xu, Z. (2008) Structural basis of Vta1 function in the multivesicular body sorting pathway, Dev Cell 14, 37-49.
  332. Xiang, Y., Morais, M. C., Cohen, D. N., Bowman, V. D., Anderson, D. L., and Rossmann, M. G. (2008) Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail, Proc Natl Acad Sci U S A 105, 9552-9557.
  333. Vivian, J. P., Scoullar, J., Robertson, A. L., Bottomley, S. P., Horne, J., Chin, Y., Wielens, J., Thompson, P. E., Velkov, T., Piek, S., Byres, E., Beddoe, T., Wilce, M. C., Kahler, C. M., Rossjohn, J., and Scanlon, M. J. (2008) Structural and biochemical characterization of the oxidoreductase NmDsbA3 from Neisseria meningitidis, J Biol Chem 283, 32452-32461.
  334. Torbeev, V. Y., Mandal, K., Terechko, V. A., and Kent, S. B. (2008) Crystal structure of chemically synthesized HIV-1 protease and a ketomethylene isostere inhibitor based on the p2/NC cleavage site, Bioorg Med Chem Lett 18, 4554-4557.
  335. Sun, S., Kondabagil, K., Draper, B., Alam, T. I., Bowman, V. D., Zhang, Z., Hegde, S., Fokine, A., Rossmann, M. G., and Rao, V. B. (2008) The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces, Cell 135, 1251-1262.
  336. Singh, P., Wang, B., Maeda, T., Palczewski, K., and Tesmer, J. J. (2008) Structures of rhodopsin kinase in different ligand states reveal key elements involved in G protein-coupled receptor kinase activation, J Biol Chem 283, 14053-14062.
  337. Schmitz, K. R., Liu, J., Li, S., Setty, T. G., Wood, C. S., Burd, C. G., and Ferguson, K. M. (2008) Golgi localization of glycosyltransferases requires a Vps74p oligomer, Dev Cell 14, 523-534.
  338. Rutherford, K., Le Trong, I., Stenkamp, R. E., and Parson, W. W. (2008) Crystal structures of human 108V and 108M catechol O-methyltransferase, J Mol Biol 380, 120-130.
  339. Reddy, M. C., Kuppan, G., Shetty, N. D., Owen, J. L., Ioerger, T. R., and Sacchettini, J. C. (2008) Crystal structures of Mycobacterium tuberculosis S-adenosyl-L-homocysteine hydrolase in ternary complex with substrate and inhibitors, Protein Sci 17, 2134-2144.
  340. Qin, L., Mills, D. A., Buhrow, L., Hiser, C., and Ferguson-Miller, S. (2008) A conserved steroid binding site in cytochrome C oxidase, Biochemistry 47, 9931-9933.
  341. Paukstelis, P. J., Chen, J. H., Chase, E., Lambowitz, A. M., and Golden, B. L. (2008) Structure of a tyrosyl-tRNA synthetase splicing factor bound to a group I intron RNA, Nature 451, 94-97.
  342. Pache, L., Venkataraman, S., Reddy, V. S., and Nemerow, G. R. (2008) Structural variations in species B adenovirus fibers impact CD46 association, J Virol 82, 7923-7931.
  343. Pache, L., Venkataraman, S., Nemerow, G. R., and Reddy, V. S. (2008) Conservation of fiber structure and CD46 usage by subgroup B2 adenoviruses, Virology 375, 573-579.
  344. Oldham, M. L., Davidson, A. L., and Chen, J. (2008) Structural insights into ABC transporter mechanism, Curr Opin Struct Biol 18, 726-733.
  345. Ngo, J. C., Giang, K., Chakrabarti, S., Ma, C. T., Huynh, N., Hagopian, J. C., Dorrestein, P. C., Fu, X. D., Adams, J. A., and Ghosh, G. (2008) A sliding docking interaction is essential for sequential and processive phosphorylation of an SR protein by SRPK1, Mol Cell 29, 563-576.
  346. Naidoo, N., Harrop, S. J., Sobti, M., Haynes, P. A., Szymczyna, B. R., Williamson, J. R., Curmi, P. M., and Mabbutt, B. C. (2008) Crystal structure of Lsm3 octamer from Saccharomyces cerevisiae: implications for Lsm ring organisation and recruitment, J Mol Biol 377, 1357-1371.
  347. Momb, J., Wang, C., Liu, D., Thomas, P. W., Petsko, G. A., Guo, H., Ringe, D., and Fast, W. (2008) Mechanism of the quorum-quenching lactonase (AiiA) from Bacillus thuringiensis. 2. Substrate modeling and active site mutations, Biochemistry 47, 7715-7725.
  348. Mileni, M., Johnson, D. S., Wang, Z., Everdeen, D. S., Liimatta, M., Pabst, B., Bhattacharya, K., Nugent, R. A., Kamtekar, S., Cravatt, B. F., Ahn, K., and Stevens, R. C. (2008) Structure-guided inhibitor design for human FAAH by interspecies active site conversion, Proc Natl Acad Sci U S A 105, 12820-12824.
  349. Malakhova, M., Tereshko, V., Lee, S. Y., Yao, K., Cho, Y. Y., Bode, A., and Dong, Z. (2008) Structural basis for activation of the autoinhibitory C-terminal kinase domain of p90 RSK2, Nat Struct Mol Biol 15, 112-113.
  350. Maksimoska, J., Feng, L., Harms, K., Yi, C., Kissil, J., Marmorstein, R., and Meggers, E. (2008) Targeting large kinase active site with rigid, bulky octahedral ruthenium complexes, J Am Chem Soc 130, 15764-15765.
  351. Makabe, K., and Koide, S. (2008) The promiscuity of beta-strand pairing allows for rational design of beta-sheet face inversion, J Am Chem Soc 130, 14370-14371.
  352. Makabe, K., Biancalana, M., Yan, S., Tereshko, V., Gawlak, G., Miller-Auer, H., Meredith, S. C., and Koide, S. (2008) High-resolution structure of a self-assembly-competent form of a hydrophobic peptide captured in a soluble beta-sheet scaffold, J Mol Biol 378, 459-467.
  353. Lok, S. M., Kostyuchenko, V., Nybakken, G. E., Holdaway, H. A., Battisti, A. J., Sukupolvi-Petty, S., Sedlak, D., Fremont, D. H., Chipman, P. R., Roehrig, J. T., Diamond, M. S., Kuhn, R. J., and Rossmann, M. G. (2008) Binding of a neutralizing antibody to dengue virus alters the arrangement of surface glycoproteins, Nat Struct Mol Biol 15, 312-317.
  354. Liu, X., Pavlovsky, A. G., and Viola, R. E. (2008) The structural basis for allosteric inhibition of a threonine-sensitive aspartokinase, J Biol Chem 283, 16216-16225.
  355. Liu, D., Momb, J., Thomas, P. W., Moulin, A., Petsko, G. A., Fast, W., and Ringe, D. (2008) Mechanism of the quorum-quenching lactonase (AiiA) from Bacillus thuringiensis. 1. Product-bound structures, Biochemistry 47, 7706-7714.
  356. Lin, C. C., Huoh, Y. S., Schmitz, K. R., Jensen, L. E., and Ferguson, K. M. (2008) Pellino proteins contain a cryptic FHA domain that mediates interaction with phosphorylated IRAK1, Structure 16, 1806-1816.
  357. Li, L., Nachtergaele, S., Seddon, A. M., Tereshko, V., Ponomarenko, N., and Ismagilov, R. F. (2008) Simple host-guest chemistry to modulate the process of concentration and crystallization of membrane proteins by detergent capture in a microfluidic device, J Am Chem Soc 130, 14324-14328.
  358. Li, L., Lok, S. M., Yu, I. M., Zhang, Y., Kuhn, R. J., Chen, J., and Rossmann, M. G. (2008) The flavivirus precursor membrane-envelope protein complex: structure and maturation, Science 319, 1830-1834.
  359. Le Coq, J., Pavlovsky, A., Malik, R., Sanishvili, R., Xu, C., and Viola, R. E. (2008) Examination of the mechanism of human brain aspartoacylase through the binding of an intermediate analogue, Biochemistry 47, 3484-3492.
  360. Laurberg, M., Asahara, H., Korostelev, A., Zhu, J., Trakhanov, S., and Noller, H. F. (2008) Structural basis for translation termination on the 70S ribosome, Nature 454, 852-857.
  361. Langley, D. B., Harty, D. W., Jacques, N. A., Hunter, N., Guss, J. M., and Collyer, C. A. (2008) Structure of N-acetyl-beta-D-glucosaminidase (GcnA) from the endocarditis pathogen Streptococcus gordonii and its complex with the mechanism-based inhibitor NAG-thiazoline, J Mol Biol 377, 104-116.
  362. Lai, L., Xu, Z., Zhou, J., Lee, K. D., and Amidon, G. L. (2008) Molecular basis of prodrug activation by human valacyclovirase, an alpha-amino acid ester hydrolase, J Biol Chem 283, 9318-9327.
  363. Kozbial, P., Xu, Q., Chiu, H. J., McMullan, D., Krishna, S. S., Miller, M. D., Abdubek, P., Acosta, C., Astakhova, T., Axelrod, H. L., Carlton, D., Clayton, T., Deller, M., Duan, L., Elias, Y., Elsliger, M. A., Feuerhelm, J., Grzechnik, S. K., Hale, J., Han, G. W., Jaroszewski, L., Jin, K. K., Klock, H. E., Knuth, M. W., Koesema, E., Kumar, A., Marciano, D., Morse, A. T., Murphy, K. D., Nigoghossian, E., Okach, L., Oommachen, S., Reyes, R., Rife, C. L., Spraggon, G., Trout, C. V., van den Bedem, H., Weekes, D., White, A., Wolf, G., Zubieta, C., Hodgson, K. O., Wooley, J., Deacon, A. M., Godzik, A., Lesley, S. A., and Wilson, I. A. (2008) Crystal structures of MW1337R and lin2004: representatives of a novel protein family that adopt a four-helical bundle fold, Proteins 71, 1589-1596.
  364. Korostelev, A., Asahara, H., Lancaster, L., Laurberg, M., Hirschi, A., Zhu, J., Trakhanov, S., Scott, W. G., and Noller, H. F. (2008) Crystal structure of a translation termination complex formed with release factor RF2, Proc Natl Acad Sci U S A 105, 19684-19689.
  365. Klein, D. E., Stayrook, S. E., Shi, F., Narayan, K., and Lemmon, M. A. (2008) Structural basis for EGFR ligand sequestration by Argos, Nature 453, 1271-1275.
  366. Kainov, D. E., Vitorino, M., Cavarelli, J., Poterszman, A., and Egly, J. M. (2008) Structural basis for group A trichothiodystrophy, Nat Struct Mol Biol 15, 980-984.
  367. Jormakka, M., Yokoyama, K., Yano, T., Tamakoshi, M., Akimoto, S., Shimamura, T., Curmi, P., and Iwata, S. (2008) Molecular mechanism of energy conservation in polysulfide respiration, Nat Struct Mol Biol 15, 730-737.
  368. Johnston, J. W., Coussens, N. P., Allen, S., Houtman, J. C., Turner, K. H., Zaleski, A., Ramaswamy, S., Gibson, B. W., and Apicella, M. A. (2008) Characterization of the N-acetyl-5-neuraminic acid-binding site of the extracytoplasmic solute receptor (SiaP) of nontypeable Haemophilus influenzae strain 2019, J Biol Chem 283, 855-865.
  369. Jayaram, H., Accardi, A., Wu, F., Williams, C., and Miller, C. (2008) Ion permeation through a Cl--selective channel designed from a CLC Cl-/H+ exchanger, Proc Natl Acad Sci U S A 105, 11194-11199.
  370. Jauch, R., Ng, C. K., Saikatendu, K. S., Stevens, R. C., and Kolatkar, P. R. (2008) Crystal structure and DNA binding of the homeodomain of the stem cell transcription factor Nanog, J Mol Biol 376, 758-770.
  371. Jaakola, V. P., Griffith, M. T., Hanson, M. A., Cherezov, V., Chien, E. Y., Lane, J. R., Ijzerman, A. P., and Stevens, R. C. (2008) The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist, Science 322, 1211-1217.
  372. Huang, J., Koide, A., Makabe, K., and Koide, S. (2008) Design of protein function leaps by directed domain interface evolution, Proc Natl Acad Sci U S A 105, 6578-6583.
  373. Huai, Q., Zhou, A., Lin, L., Mazar, A. P., Parry, G. C., Callahan, J., Shaw, D. E., Furie, B., Furie, B. C., and Huang, M. (2008) Crystal structures of two human vitronectin, urokinase and urokinase receptor complexes, Nat Struct Mol Biol 15, 422-423.
  374. Hawse, W. F., Hoff, K. G., Fatkins, D. G., Daines, A., Zubkova, O. V., Schramm, V. L., Zheng, W., and Wolberger, C. (2008) Structural insights into intermediate steps in the Sir2 deacetylation reaction, Structure 16, 1368-1377.
  375. Hanson, M. A., Cherezov, V., Griffith, M. T., Roth, C. B., Jaakola, V. P., Chien, E. Y., Velasquez, J., Kuhn, P., and Stevens, R. C. (2008) A specific cholesterol binding site is established by the 2.8 A structure of the human beta2-adrenergic receptor, Structure 16, 897-905.
  376. Hakemian, A. S., Kondapalli, K. C., Telser, J., Hoffman, B. M., Stemmler, T. L., and Rosenzweig, A. C. (2008) The metal centers of particulate methane monooxygenase from Methylosinus trichosporium OB3b, Biochemistry 47, 6793-6801.
  377. Guo, M., Ignatov, M., Musier-Forsyth, K., Schimmel, P., and Yang, X. L. (2008) Crystal structure of tetrameric form of human lysyl-tRNA synthetase: Implications for multisynthetase complex formation, Proc Natl Acad Sci U S A 105, 2331-2336.
  378. Graham, S. C., and Guss, J. M. (2008) Complexes of mutants of Escherichia coli aminopeptidase P and the tripeptide substrate ValProLeu, Arch Biochem Biophys 469, 200-208.
  379. Gan, L., and Johnson, J. E. (2008) An optimal exposure strategy for cryoprotected virus crystals with lattice constants greater than 1000 A, J Synchrotron Radiat 15, 223-226.
  380. Fulton, Z., McAlister, A., Wilce, M. C., Brammananth, R., Zaker-Tabrizi, L., Perugini, M. A., Bottomley, S. P., Coppel, R. L., Crellin, P. K., Rossjohn, J., and Beddoe, T. (2008) Crystal structure of a UDP-glucose-specific glycosyltransferase from a Mycobacterium species, J Biol Chem 283, 27881-27890.
  381. Fokine, A., Miroshnikov, K. A., Shneider, M. M., Mesyanzhinov, V. V., and Rossmann, M. G. (2008) Structure of the bacteriophage phi KZ lytic transglycosylase gp144, J Biol Chem 283, 7242-7250.
  382. Feeser, E. A., and Wolberger, C. (2008) Structural and functional studies of the Rap1 C-terminus reveal novel separation-of-function mutants, J Mol Biol 380, 520-531.
  383. Faham, S., Watanabe, A., Besserer, G. M., Cascio, D., Specht, A., Hirayama, B. A., Wright, E. M., and Abramson, J. (2008) The crystal structure of a sodium galactose transporter reveals mechanistic insights into Na+/sugar symport, Science 321, 810-814.
  384. Debler, E. W., Ma, Y., Seo, H. S., Hsia, K. C., Noriega, T. R., Blobel, G., and Hoelz, A. (2008) A fence-like coat for the nuclear pore membrane, Mol Cell 32, 815-826.
  385. Davidson, A. L., Dassa, E., Orelle, C., and Chen, J. (2008) Structure, function, and evolution of bacterial ATP-binding cassette systems, Microbiol Mol Biol Rev 72, 317-364, table of contents.
  386. Datta, S., Koutmos, M., Pattridge, K. A., Ludwig, M. L., and Matthews, R. G. (2008) A disulfide-stabilized conformer of methionine synthase reveals an unexpected role for the histidine ligand of the cobalamin cofactor, Proc Natl Acad Sci U S A 105, 4115-4120.
  387. Coseno, M., Martin, G., Berger, C., Gilmartin, G., Keller, W., and Doublie, S. (2008) Crystal structure of the 25 kDa subunit of human cleavage factor Im, Nucleic Acids Res 36, 3474-3483.
  388. Chen, Z., Singer, W. D., Danesh, S. M., Sternweis, P. C., and Sprang, S. R. (2008) Recognition of the activated states of Galpha13 by the rgRGS domain of PDZRhoGEF, Structure 16, 1532-1543.
  389. Byres, E., Paton, A. W., Paton, J. C., Lofling, J. C., Smith, D. F., Wilce, M. C., Talbot, U. M., Chong, D. C., Yu, H., Huang, S., Chen, X., Varki, N. M., Varki, A., Rossjohn, J., and Beddoe, T. (2008) Incorporation of a non-human glycan mediates human susceptibility to a bacterial toxin, Nature 456, 648-652.
  390. Brent, M. M., Anand, R., and Marmorstein, R. (2008) Structural basis for DNA recognition by FoxO1 and its regulation by posttranslational modification, Structure 16, 1407-1416.
  391. Boerema, D. J., Tereshko, V. A., and Kent, S. B. (2008) Total synthesis by modern chemical ligation methods and high resolution (1.1 A) X-ray structure of ribonuclease A, Biopolymers 90, 278-286.
  392. Bitto, E., Huang, Y., Bingman, C. A., Singh, S., Thorson, J. S., and Phillips, G. N., Jr. (2008) The structure of flavin-dependent tryptophan 7-halogenase RebH, Proteins 70, 289-293.
  393. Bitto, E., Bingman, C. A., Kondrashov, D. A., McCoy, J. G., Bannen, R. M., Wesenberg, G. E., and Phillips, G. N., Jr. (2008) Structure and dynamics of gamma-SNAP: insight into flexibility of proteins from the SNAP family, Proteins 70, 93-104.
  394. Bitto, E., Bingman, C. A., Bittova, L., Kondrashov, D. A., Bannen, R. M., Fox, B. G., Markley, J. L., and Phillips, G. N., Jr. (2008) Structure of human J-type co-chaperone HscB reveals a tetracysteine metal-binding domain, J Biol Chem 283, 30184-30192.
  395. Biancalana, M., Makabe, K., Koide, A., and Koide, S. (2008) Aromatic cross-strand ladders control the structure and stability of beta-rich peptide self-assembly mimics, J Mol Biol 383, 205-213.
  396. Bhati, M., Lee, C., Nancarrow, A. L., Lee, M., Craig, V. J., Bach, I., Guss, J. M., Mackay, J. P., and Matthews, J. M. (2008) Implementing the LIM code: the structural basis for cell type-specific assembly of LIM-homeodomain complexes, Embo Journal 27, 2018-2029.
  397. Bailey, L. J., McCoy, J. G., Phillips, G. N., Jr., and Fox, B. G. (2008) Structural consequences of effector protein complex formation in a diiron hydroxylase, Proc Natl Acad Sci U S A 105, 19194-19198.
  398. Bae, E., Bingman, C. A., Aceti, D. J., and Phillips, G. N., Jr. (2008) Crystal structure of Homo sapiens protein LOC79017, Proteins 70, 588-591.
  399. Avvakumov, G. V., Walker, J. R., Xue, S., Li, Y., Duan, S., Bronner, C., Arrowsmith, C. H., and Dhe-Paganon, S. (2008) Structural basis for recognition of hemi-methylated DNA by the SRA domain of human UHRF1, Nature 455, 822-825.
  400. Yan, S., Gawlak, G., Makabe, K., Tereshko, V., Koide, A., and Koide, S. (2007) Hydrophobic surface burial is the major stability determinant of a flat, single-layer beta-sheet, J Mol Biol 368, 230-243.
  401. Wheeler, K. E., Nocek, J. M., Cull, D. A., Yatsunyk, L. A., Rosenzweig, A. C., and Hoffman, B. M. (2007) Dynamic docking of cytochrome b5 with myoglobin and alpha-hemoglobin: heme-neutralization "squares" and the binding of electron-transfer-reactive configurations, J Am Chem Soc 129, 3906-3917.
  402. Wang, F., Podell, E. R., Zaug, A. J., Yang, Y., Baciu, P., Cech, T. R., and Lei, M. (2007) The POT1-TPP1 telomere complex is a telomerase processivity factor, Nature 445, 506-510.
  403. Wang, F., Langley, R., Gulten, G., Dover, L. G., Besra, G. S., Jacobs, W. R., Jr., and Sacchettini, J. C. (2007) Mechanism of thioamide drug action against tuberculosis and leprosy, J Exp Med 204, 73-78.
  404. Touw, D. S., Nordman, C. E., Stuckey, J. A., and Pecoraro, V. L. (2007) Identifying important structural characteristics of arsenic resistance proteins by using designed three-stranded coiled coils, Proc Natl Acad Sci U S A 104, 11969-11974.
  405. Tong, Y., Chugha, P., Hota, P. K., Alviani, R. S., Li, M., Tempel, W., Shen, L., Park, H. W., and Buck, M. (2007) Binding of Rac1, Rnd1, and RhoD to a novel Rho GTPase interaction motif destabilizes dimerization of the plexin-B1 effector domain, J Biol Chem 282, 37215-37224.
  406. Tempel, W., Rabeh, W. M., Bogan, K. L., Belenky, P., Wojcik, M., Seidle, H. F., Nedyalkova, L., Yang, T., Sauve, A. A., Park, H. W., and Brenner, C. (2007) Nicotinamide riboside kinase structures reveal new pathways to NAD+, PLoS Biol 5, e263.
  407. Sun, S., Kondabagil, K., Gentz, P. M., Rossmann, M. G., and Rao, V. B. (2007) The structure of the ATPase that powers DNA packaging into bacteriophage T4 procapsids, Mol Cell 25, 943-949.
  408. Rosenbaum, D. M., Cherezov, V., Hanson, M. A., Rasmussen, S. G., Thian, F. S., Kobilka, T. S., Choi, H. J., Yao, X. J., Weis, W. I., Stevens, R. C., and Kobilka, B. K. (2007) GPCR engineering yields high-resolution structural insights into beta2-adrenergic receptor function, Science 318, 1266-1273.
  409. Ramesh, A., Savva, C. G., Holzenburg, A., and Sacchettini, J. C. (2007) Crystal structure of Rsr, an ortholog of the antigenic Ro protein, links conformational flexibility to RNA binding activity, J Biol Chem 282, 14960-14967.
  410. Qin, L., Mills, D. A., Hiser, C., Murphree, A., Garavito, R. M., Ferguson-Miller, S., and Hosler, J. (2007) Crystallographic location and mutational analysis of Zn and Cd inhibitory sites and role of lipidic carboxylates in rescuing proton path mutants in cytochrome c oxidase, Biochemistry 46, 6239-6248.
  411. Makabe, K., Yan, S., Tereshko, V., Gawlak, G., and Koide, S. (2007) Beta-strand flipping and slipping triggered by turn replacement reveal the opportunistic nature of beta-strand pairing, J Am Chem Soc 129, 14661-14669.
  412. Lujan, S. A., Guogas, L. M., Ragonese, H., Matson, S. W., and Redinbo, M. R. (2007) Disrupting antibiotic resistance propagation by inhibiting the conjugative DNA relaxase, Proc Natl Acad Sci U S A 104, 12282-12287.
  413. Liu, X., and Marmorstein, R. (2007) Structure of the retinoblastoma protein bound to adenovirus E1A reveals the molecular basis for viral oncoprotein inactivation of a tumor suppressor, Genes Dev 21, 2711-2716.
  414. Liu, D., Thomas, P. W., Momb, J., Hoang, Q. Q., Petsko, G. A., Ringe, D., and Fast, W. (2007) Structure and specificity of a quorum-quenching lactonase (AiiB) from Agrobacterium tumefaciens, Biochemistry 46, 11789-11799.
  415. Lieberman, R. L., Wustman, B. A., Huertas, P., Powe, A. C., Jr., Pine, C. W., Khanna, R., Schlossmacher, M. G., Ringe, D., and Petsko, G. A. (2007) Structure of acid beta-glucosidase with pharmacological chaperone provides insight into Gaucher disease, Nat Chem Biol 3, 101-107.
  416. Koide, A., Gilbreth, R. N., Esaki, K., Tereshko, V., and Koide, S. (2007) High-affinity single-domain binding proteins with a binary-code interface, Proc Natl Acad Sci U S A 104, 6632-6637.
  417. Jadzinsky, P. D., Calero, G., Ackerson, C. J., Bushnell, D. A., and Kornberg, R. D. (2007) Structure of a thiol monolayer-protected gold nanoparticle at 1.1 A resolution, Science 318, 430-433.
  418. Hogg, M., Aller, P., Konigsberg, W., Wallace, S. S., and Doublie, S. (2007) Structural and biochemical investigation of the role in proofreading of a beta hairpin loop found in the exonuclease domain of a replicative DNA polymerase of the B family, J Biol Chem 282, 1432-1444.
  419. Garcia-Rodriguez, C., Levy, R., Arndt, J. W., Forsyth, C. M., Razai, A., Lou, J., Geren, I., Stevens, R. C., and Marks, J. D. (2007) Molecular evolution of antibody cross-reactivity for two subtypes of type A botulinum neurotoxin, Nat Biotechnol 25, 107-116.
  420. Fleming, C. D., Edwards, C. C., Kirby, S. D., Maxwell, D. M., Potter, P. M., Cerasoli, D. M., and Redinbo, M. R. (2007) Crystal structures of human carboxylesterase 1 in covalent complexes with the chemical warfare agents soman and tabun, Biochemistry 46, 5063-5071.
  421. Dey, S., Hu, Z., Xu, X. L., Sacchettini, J. C., and Grant, G. A. (2007) The effect of hinge mutations on effector binding and domain rotation in Escherichia coli D-3-phosphoglycerate dehydrogenase, J Biol Chem 282, 18418-18426.
  422. Debler, E. W., Kaufmann, G. F., Kirchdoerfer, R. N., Mee, J. M., Janda, K. D., and Wilson, I. A. (2007) Crystal structures of a quorum-quenching antibody, J Mol Biol 368, 1392-1402.
  423. D'Aquino, J. A., Lattimer, J. R., Denninger, A., D'Aquino, K. E., and Ringe, D. (2007) Role of the N-terminal helix in the metal ion-induced activation of the diphtheria toxin repressor DtxR, Biochemistry 46, 11761-11770.
  424. Couture, J. F., Collazo, E., Ortiz-Tello, P. A., Brunzelle, J. S., and Trievel, R. C. (2007) Specificity and mechanism of JMJD2A, a trimethyllysine-specific histone demethylase, Nat Struct Mol Biol 14, 689-695.
  425. Coussens, N. P., Mowers, J. C., McDonald, C., Nunez, G., and Ramaswamy, S. (2007) Crystal structure of the Nod1 caspase activation and recruitment domain, Biochem Biophys Res Commun 353, 1-5.
  426. Cordero-Morales, J. F., Jogini, V., Lewis, A., Vasquez, V., Cortes, D. M., Roux, B., and Perozo, E. (2007) Molecular driving forces determining potassium channel slow inactivation, Nat Struct Mol Biol 14, 1062-1069.
  427. Chrencik, J. E., Brooun, A., Recht, M. I., Nicola, G., Davis, L. K., Abagyan, R., Widmer, H., Pasquale, E. B., and Kuhn, P. (2007) Three-dimensional structure of the EphB2 receptor in complex with an antagonistic peptide reveals a novel mode of inhibition, J Biol Chem 282, 36505-36513.
  428. Cherezov, V., Rosenbaum, D. M., Hanson, M. A., Rasmussen, S. G., Thian, F. S., Kobilka, T. S., Choi, H. J., Kuhn, P., Weis, W. I., Kobilka, B. K., and Stevens, R. C. (2007) High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor, Science 318, 1258-1265.
  429. Boudko, S. P., Kuhn, R. J., and Rossmann, M. G. (2007) The coiled-coil domain structure of the Sin Nombre virus nucleocapsid protein, J Mol Biol 366, 1538-1544.
  430. Borbulevych, O. Y., Insaidoo, F. K., Baxter, T. K., Powell, D. J., Jr., Johnson, L. A., Restifo, N. P., and Baker, B. M. (2007) Structures of MART-126/27-35 Peptide/HLA-A2 complexes reveal a remarkable disconnect between antigen structural homology and T cell recognition, J Mol Biol 372, 1123-1136.
  431. Bitto, E., Bingman, C. A., Wesenberg, G. E., McCoy, J. G., and Phillips, G. N., Jr. (2007) Structure of aspartoacylase, the brain enzyme impaired in Canavan disease, Proc Natl Acad Sci U S A 104, 456-461.
  432. Bianchetti, C. M., Yi, L., Ragsdale, S. W., and Phillips, G. N., Jr. (2007) Comparison of apo- and heme-bound crystal structures of a truncated human heme oxygenase-2, J Biol Chem 282, 37624-37631.
  433. Aranda, R. t., Worley, C. E., Liu, M., Bitto, E., Cates, M. S., Olson, J. S., Lei, B., and Phillips, G. N., Jr. (2007) Bis-methionyl coordination in the crystal structure of the heme-binding domain of the streptococcal cell surface protein Shp, J Mol Biol 374, 374-383.
  434. Aller, P., Rould, M. A., Hogg, M., Wallace, S. S., and Doublie, S. (2007) A structural rationale for stalling of a replicative DNA polymerase at the most common oxidative thymine lesion, thymine glycol, Proc Natl Acad Sci U S A 104, 814-818.
  435. Xiang, Y., Morais, M. C., Battisti, A. J., Grimes, S., Jardine, P. J., Anderson, D. L., and Rossmann, M. G. (2006) Structural changes of bacteriophage phi29 upon DNA packaging and release, EMBO J 25, 5229-5239.
  436. Wang, T., Zhang, X., Bheda, P., Revollo, J. R., Imai, S., and Wolberger, C. (2006) Structure of Nampt/PBEF/visfatin, a mammalian NAD+ biosynthetic enzyme, Nat Struct Mol Biol 13, 661-662.
  437. Sazinsky, M. H., Agarwal, S., Arguello, J. M., and Rosenzweig, A. C. (2006) Structure of the actuator domain from the Archaeoglobus fulgidus Cu(+)-ATPase, Biochemistry 45, 9949-9955.
  438. Ratia, K., Saikatendu, K. S., Santarsiero, B. D., Barretto, N., Baker, S. C., Stevens, R. C., and Mesecar, A. D. (2006) Severe acute respiratory syndrome coronavirus papain-like protease: structure of a viral deubiquitinating enzyme, Proc Natl Acad Sci U S A 103, 5717-5722.
  439. Qin, L., Hiser, C., Mulichak, A., Garavito, R. M., and Ferguson-Miller, S. (2006) Identification of conserved lipid/detergent-binding sites in a high-resolution structure of the membrane protein cytochrome c oxidase, Proc Natl Acad Sci U S A 103, 16117-16122.
  440. McCoy, J. G., Bingman, C. A., Bitto, E., Holdorf, M. M., Makaroff, C. A., and Phillips, G. N., Jr. (2006) Structure of an ETHE1-like protein from Arabidopsis thaliana, Acta Crystallogr D Biol Crystallogr 62, 964-970.
  441. McCoy, J. G., Bailey, L. J., Bitto, E., Bingman, C. A., Aceti, D. J., Fox, B. G., and Phillips, G. N., Jr. (2006) Structure and mechanism of mouse cysteine dioxygenase, Proc Natl Acad Sci U S A 103, 3084-3089.
  442. Makabe, K., Tereshko, V., Gawlak, G., Yan, S., and Koide, S. (2006) Atomic-resolution crystal structure of Borrelia burgdorferi outer surface protein A via surface engineering, Protein Sci 15, 1907-1914.
  443. Makabe, K., McElheny, D., Tereshko, V., Hilyard, A., Gawlak, G., Yan, S., Koide, A., and Koide, S. (2006) Atomic structures of peptide self-assembly mimics, Proc Natl Acad Sci U S A 103, 17753-17758.
  444. Liu, Q., Greimann, J. C., and Lima, C. D. (2006) Reconstitution, activities, and structure of the eukaryotic RNA exosome, Cell 127, 1223-1237.
  445. Li, L., Mustafi, D., Fu, Q., Tereshko, V., Chen, D. L., Tice, J. D., and Ismagilov, R. F. (2006) Nanoliter microfluidic hybrid method for simultaneous screening and optimization validated with crystallization of membrane proteins, Proc Natl Acad Sci U S A 103, 19243-19248.
  446. Li, H., Ilin, S., Wang, W., Duncan, E. M., Wysocka, J., Allis, C. D., and Patel, D. J. (2006) Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF, Nature 442, 91-95.
  447. Joseph, J. S., Saikatendu, K. S., Subramanian, V., Neuman, B. W., Brooun, A., Griffith, M., Moy, K., Yadav, M. K., Velasquez, J., Buchmeier, M. J., Stevens, R. C., and Kuhn, P. (2006) Crystal structure of nonstructural protein 10 from the severe acute respiratory syndrome coronavirus reveals a novel fold with two zinc-binding motifs, J Virol 80, 7894-7901.
  448. Hoff, K. G., Avalos, J. L., Sens, K., and Wolberger, C. (2006) Insights into the sirtuin mechanism from ternary complexes containing NAD+ and acetylated peptide, Structure 14, 1231-1240.
  449. Gerdts, C. J., Tereshko, V., Yadav, M. K., Dementieva, I., Collart, F., Joachimiak, A., Stevens, R. C., Kuhn, P., Kossiakoff, A., and Ismagilov, R. F. (2006) Time-controlled microfluidic seeding in nL-volume droplets to separate nucleation and growth stages of protein crystallization, Angew Chem Int Ed Engl 45, 8156-8160.
  450. Gan, L., Speir, J. A., Conway, J. F., Lander, G., Cheng, N., Firek, B. A., Hendrix, R. W., Duda, R. L., Liljas, L., and Johnson, J. E. (2006) Capsid conformational sampling in HK97 maturation visualized by X-ray crystallography and cryo-EM, Structure 14, 1655-1665.
  451. Das, C., Hoang, Q. Q., Kreinbring, C. A., Luchansky, S. J., Meray, R. K., Ray, S. S., Lansbury, P. T., Ringe, D., and Petsko, G. A. (2006) Structural basis for conformational plasticity of the Parkinson's disease-associated ubiquitin hydrolase UCH-L1, Proc Natl Acad Sci U S A 103, 4675-4680.
  452. Chrencik, J. E., Brooun, A., Kraus, M. L., Recht, M. I., Kolatkar, A. R., Han, G. W., Seifert, J. M., Widmer, H., Auer, M., and Kuhn, P. (2006) Structural and biophysical characterization of the EphB4*ephrinB2 protein-protein interaction and receptor specificity, J Biol Chem 281, 28185-28192.
  453. Chen, Y., Yang, Y., Wang, F., Wan, K., Yamane, K., Zhang, Y., and Lei, M. (2006) Crystal structure of human histone lysine-specific demethylase 1 (LSD1), Proc Natl Acad Sci U S A 103, 13956-13961.
  454. Chen, P. R., Bae, T., Williams, W. A., Duguid, E. M., Rice, P. A., Schneewind, O., and He, C. (2006) An oxidation-sensing mechanism is used by the global regulator MgrA in Staphylococcus aureus, Nat Chem Biol 2, 591-595.
  455. Yadav, M. K., Redman, J. E., Leman, L. J., Alvarez-Gutierrez, J. M., Zhang, Y., Stout, C. D., and Ghadiri, M. R. (2005) Structure-based engineering of internal cavities in coiled-coil peptides, Biochemistry 44, 9723-9732.
  456. Yadav, M. K., Gerdts, C. J., Sanishvili, R., Smith, W. W., Roach, L. S., Ismagilov, R. F., Kuhn, P., and Stevens, R. C. (2005) In situ data collection and structure refinement from microcapillary protein crystallization, J Appl Crystallogr 38, 900-905.
  457. Solomon, I. H., Hager, J. M., Safi, R., McDonnell, D. P., Redinbo, M. R., and Ortlund, E. A. (2005) Crystal structure of the human LRH-1 DBD-DNA complex reveals Ftz-F1 domain positioning is required for receptor activity, J Mol Biol 354, 1091-1102.
  458. Saikatendu, K. S., Joseph, J. S., Subramanian, V., Clayton, T., Griffith, M., Moy, K., Velasquez, J., Neuman, B. W., Buchmeier, M. J., Stevens, R. C., and Kuhn, P. (2005) Structural basis of severe acute respiratory syndrome coronavirus ADP-ribose-1''-phosphate dephosphorylation by a conserved domain of nsP3, Structure 13, 1665-1675.
  459. Arndt, J. W., Yu, W., Bi, F., and Stevens, R. C. (2005) Crystal structure of botulinum neurotoxin type G light chain: serotype divergence in substrate recognition, Biochemistry 44, 9574-9580.
  460. Allard, S. T., Bingman, C. A., Johnson, K. A., Wesenberg, G. E., Bitto, E., Jeon, W. B., and Phillips, G. N., Jr. (2005) Structure at 1.6 A resolution of the protein from gene locus At3g22680 from Arabidopsis thaliana, Acta Crystallogr Sect F Struct Biol Cryst Commun 61, 647-650.

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