2012

1. "Direct observation of dynamics of thermal expansion using pump-probe high-energy-resolution x-ray diffraction",
   Stoupin S., March A.M., Wen H., Walko D.A., Li Y., Dufresne E.M., Stepanov S.A., Kim K.-J., Shvyd’ko Yu.V., Blank V.D., and Terentyev S.A.,
   Phys. Rev. B (2012) 86, 054301(5).
    
2. "Exploration of synchrotron Mössbauer microscopy with micrometer resolution: forward and a new backscattering modality on natural samples",
   Yan L., Zhao J., Toellner T.S., Divan R., Xu S., Cai Z., Boesenberg J.S., Friedrich J.M., Cramer S.P., and Alp E.E.,
   J. Synchrotron Radiat. (2012) 19, 814-820.

   2011

3. "PID feedback control of monochromator thermal stabilization",
   Yoder D.W., Makarov O., Corcoran S., and Fischetti R.F.,
   Nucl. Instum. Meth. Phys. Res. A (2011) 649, 107-108.
    
4. "Mini-beam collimator applications at the Advanced Photon Source",
   Xu S., Keefe L.J., Mulichak A., Yan L., Alp E.E., Zhao J., and Fischetti R.F.,
   Nucl. Instum. Meth. Phys. Res. A (2011) 649, 104-106.
    
5. "Alignment Protocol for Effective use of Hard X-ray Quad collimator for micro-crystallography",
   Xu S., Nagarajan V., Sanishvili R., and Fischetti R.F.,
   Proc. SPIE (2011) 8125, 81250X1-81250X8.
    
6. "Simulation and optimization of a sub-micron beam for macromolecular crystallography using SHADOW and XOP at GM/CA CAT at the APS",
   Liu Z., Xu S., Yoder D., and Fischetti R.F.,
   Proc. SPIE (2011) 8129, 81290E1-81290E8.
    
7. "Structure and function of the RedJ protein, a thioesterase from the prodiginine biosynthetic pathway in Streptomyces coelicolor",
   Whicher J.R., Florova G., Sydor P.K., Singh R., Alhamadsheh M., Challis G.L., Reynolds K.A., and Smith J.L.,
   J. Biol. Chem (2011) 286, 22558-22569.
    
8. "Crystal Structure of a Zinc-dependent D-Serine Dehydratase from Chicken Kidney",
   Tanaka H., Senda M., Venugopalan N., Yamamoto A., Senda T., Ishida T., and Horiike K.,
   J. Biol. Chem. (2011) 286, 27548-27558.
    
9. "Terminal alkene formation by the thioesterase of curacin A biosynthesis: structure of a decarboxylating thioesterase",
   Gehret J.J., Gu L., Gerwick W.H., Wipf P., Sherman D.H., and Smith J.L.,
   J. Biol. Chem. (2011) 286, 14445-14454.
    
10. "Automated sample-scanning methods for radiation damage mitigation and diffraction-based centering of macromolecular crystals",
    Hilgart M.C., Sanishvili R., Ogata C.M., Becker M., Venugopalan N., Stepanov S., Makarov O., Smith J.L., and Fischetti R.F.,
    J. Synchrotron Radiat. (2011) 18, 717-722.
     
11. "Fast fluorescence techniques for crystallography beamlines",
    Stepanov S., Hilgart M., Yoder D.W., Makarov O., Becker M., Sanishvili R., Ogata C.M., Venugopalan N., Aragão D., Caffrey M., Smith J.L., and Fischetti R.F.,
    J. Appl. Crystallogr. (2011) 44, 772-778.
     
12. "Control system for the 2nd generation Berkeley automounters (BAM2) at GM/CA-CAT macromolecular crystallography beamlines",
    Makarov O., Hilgart M., Ogata C., Pothineni S., and Cork C.,
    Nucl Instrum. & Methods Phys. Res. A (2011) 649, 87-90.
     
13. "Radiation damage in protein crystals is reduced with a micron-sized X-ray beam",
    Sanishvili R., Yoder D.W., Pothineni S.B., Rosenbaum G., Xu S., Vogt S., Stepanov S., Makarov O.A., Corcoran S., Benn R., Nagarajan V., Smith J.L., and Fischetti R.F.,
    Proc. Natl. Acad. Sci. USA. (2011) 108, 6127-6132.
     
14. "JBluIce-EPICS control system for macromolecular crystallography",
    Stepanov S., Makarov O., Hilgart M., Pothineni S.B., Urakhchin A., Devarapalli S, Yoder D, Becker M, Ogata C, Sanishvili R, Venugopalan N., Smith J.L., and Fischetti R.F.,
    Acta Crystallogr. D Biol. Crystallogr. (2011) 67, 176-188.
     
15. "Structure, signaling mechanism and regulation of the natriuretic peptide receptor guanylate cyclase",
    Misono K.S., Philo J.S., Arakawa T., Ogata C.M., Qiu Y., Ogawa H., and Young H.S.,
    FEBS J. (2011) 278, 1818-1829.
     
16. "X-Ray Solution Scattering Studies of the Structural Diversity Intrinsic to Protein Ensembles",
    Makowski L., Gore D., Mandava S., Minh D., Park S., Rodi D.J., and Fischetti R.F.,
    Biopolymers (2011) 95, 531-542.
     
17. "WAXS studies of the structural diversity of hemoglobin in solution",
    Makowski L., Bardhan J., Gore D., Lal J., Mandava S., Park S., Rodi D.J., Ho N.T., Ho C., and Fischetti R.F.,
    J. Mol. Biol. (2011) 408, 909-921.

    2010

18. "Design and manufacture of mini-beam collimators for macromolecular crystallography at the GM/CA-CAT at APS",
    Xu S., Nagarajan V., and Fischetti R.F.,
    Diamond Light Source Proc. (2010) 1, 1-4.
     
19. "One-Micron Beams for Macromolecular Crystallography at GM/CA-CAT",
    Yoder D.W., Sanishvili R., Vogt S., Xu S., Makarov O., Benn R., Corcoran S., and Fischetti, R.F.,
    AIP Conf. Proc. (2010) 1234, 419-422.
     
20. "Micro-Crystallography Developments at GM/CA-CAT at the APS",
    Xu S., Makarov O., Benn R., Yoder D.W., Stepanov S., Becker M., Corcoran S., Hilgart M., Nagarajan V., Ogata C.M., Pothineni S., Sanishvili R., Smith J.L., and Fischetti R.F.,
    AIP Conf. Proc. (2010) 1234, 905-908.
     
21. "In crystallo posttranslational modification within a MauG/pre-methylamine dehydrogenase complex",
    Jensen L.M., Sanishvili R., Davidson V.L., and Wilmot C.M.,
    Science (2010) 327, 1392-1394.
     
22. "Characterization of the secondary binding sites of Maclura pomifera agglutinin by glycan array and crystallographic analyses",
    Huang J., Xu Z., Wang D., Ogata C.M., Palczewski K., Lee X., and Young N.M.,
    Glycobiology (2010) 20, 1643-1653.
     
23. "Biochemical and structural characterization of the tautomycetin thioesterase: analysis of a stereoselective polyketide hydrolase",
    Scaglione J.B., Akey, D.L., Sullivan R., Kittendorf J.D., Rath C.M., Kim E.S., Smith J.L., and Sherman D.H.,
    Angew. Chem. Int. Ed. Engl. (2010) 49, 5726-5730.
     
24. "Crystal structures of dehydratase domains from the curacin polyketide biosynthetic pathway",
    Akey D.L., Razelun J.R., Tehranisa J., Sherman D.H., Gerwick W.H., and Smith, J.L.,
    Structure (2010) 18, 94-105.
     
25. "Structure of the Rift Valley fever virus nucleocapsid protein reveals another architecture for RNA encapsidation",
    Raymond D.D., Piper M.E., Gerrard S.R., and Smith J.L.,
    Proc. Natl. Acad. Sci. USA (2010) 107, 11769-11774.
     
26. "Conformational switch triggered by alpha-ketoglutarate in a halogenase of curacin A biosynthesis",
    Khare D., Wang B., Gu L., Razelun J., Sherman D.H., Gerwick W.H., Hakansson K., and Smith J.L.,
    Proc. Natl. Acad. Sci. USA (2010) 107, 14099-14104.
     
27. "Structural basis for substrate activation and regulation by cystathionine beta-synthase (CBS) domains in cystathionine {beta}-synthase",
    Koutmos M., Kabil O., Smith J.L., and Banerjee R.,
    Proc. Natl. Acad. Sci. USA (2010) 107, 20958-20963.

    2009

28. "Rastering strategy for screening and centring of microcrystal samples of human membrane proteins with a sub-10 μm size X-ray synchrotron beam",
    Cherezov V., Hanson M.A., Griffith M.T., Hilgart M.C., Sanishvili R., Nagarajan V., Stepanov S., Fischetti R.F., Kuhn P., and Stevens R.C.,
    J. Royal Soc. Interface (2009) 6, S587-S597.
     
29. "Mini-beam collimator enables microcrystallography experiments on standard beamlines",
    Fischetti R.F., Xu S., Yoder D.W., Becker M., Nagarajan V., Sanishvili R., Hilgart M.C., Stepanov S., Makarov O., and Smith J.L.,
    J. Synchrotron Radiat. (2009) 16, 217-225.
     
30. "Structural and biochemical characterization of the type II fructose-1,6-bisphosphatase GlpX from Escherichia coli",
    Brown G., Singer A., Lunin V.V., Proudfoot M., Skarina T., Flick R., Kochinyan S., Sanishvili R., Joachimiak A., Edwards A.M., Savchenko A., and Yakunin, A.F.,
    J. Biol. Chem. (2009) 284, 3784-3792.
     
31. "Insights into tRNA-dependent amidotransferase evolution and catalysis from the structure of the Aquifex aeolicus enzyme",
    Wu J., Bu W., Sheppard K., Kitabatake M., Kwon S.T., Soll D., and Smith J.L.,
    J. Mol. Biol. (2009) 391, 703-716.
     
32. "Insights into the reactivation of cobalamin-dependent methionine synthase",
    Koutmos M., Datta S., Pattridge K.A., Smith J.L., and Matthews R.G.,
    Proc. Natl. Acad. Sci. USA (2009) 106, 18527-18532.
     
33. "Structure and functional analysis of RifR, the type II thioesterase from the rifamycin biosynthetic pathway",
    Claxton H.B., Akey D.L., Silver M.K., Admiraal S.J., and Smith J.L.,
    J. Biol. Chem. (2009) 284, 5021-5029.
     
34. "Structural basis for binding specificity between subclasses of modular polyketide synthase docking domains",
    Buchholz T.J., Geders T.W., Bartley F.E. 3rd, Reynolds K.A., Smith J.L., and Sherman D.H.,
    ACS Chem. Biol. (2009) 4, 41-52.

    2008

35. "A 7μm mini-beam improves diffraction data from small or imperfect crystals of macromolecules",
    Sanishvili R., Nagarajan V., Yoder D., Becker M., Xu S., Corcoran S., Akey D.L., Smith J.L., and Fischetti R.F.,
    Acta Crystallogr D Biol. Crystallogr. (2008) 64, 425-435.
     
36. "Characterization of protein fold by wide-angle X-ray solution scattering",
    Makowski L., Rodi D.J., Mandava S., Devarapalli S., and Fischetti R.F.,
    J. Mol. Biol. (2008 383, 731-744.
     
37. "Fitting dynamical X-ray diffraction data over the World Wide Web",
    Stepanov S. and Forrest R.,
    J. Appl. Crystallogr., (2008) 41 958-962.
     
38. "Metal active site elasticity linked to activation of homocysteine in methionine synthases",
    Koutmos M., Pejchal R., Bomer T.M., Matthews R.G., Smith J.L., and Ludwig M.L.,
    Proc. Natl. Acad. Sci. USA (2008) 105, 3286-3291.

    2007

39. "EPICS controlled sample mounting robots at the GM/CA CAT",
    Makarov O.A., Benn R., Corcoran S., Devarapalli S., Fischetti R., Hilgart M., Smith W.W., Stepanov S., and Xu S.,
    Nucl Instrum. & Methods Phys. Res. A (2007) 582, 156-158.
     
40. "Optical Performance of the GM/CA-CAT canted undulator beamlines for protein crystallography",
    Fischetti R.F., Yoder D.W., Xu S., Stepanov S., Makarov O., Benn R., Corcoran S., Diete W., Schwoerer-Boehing M., Signorato R., Schroeder L., Berman L., Viccaro P.J., and Smith J.L.,
    AIP Conf. Proc. (2007) 879, 754-757.
     
41. "Design and performance of the compact YAG imaging system for diagnostics at GMCA beamlines at APS",
    Xu S.L., Fischetti R.F., Benn R., and Corcoran S.,
    AIP Conf. Proc. (2007) 879, 1403-1406.
     
42. "Design and performance of a compact collimator on GM/CA-CAT at the Advanced Photon Source",
    Xu S. and Fischetti R.F.,
    Proc. SPIE (2007) 6665, 66650X1-66650X8.
     
43. "Molecular basis of the antimutagenic activity of the house-cleaning inosine triphosphate pyrophosphatase RdgB from Escherichia coli",
    Savchenko A., Proudfoot M., Skarina T., Singer A., Litvinova O., Sanishvili R., Brown G., Chirgadze N., and Yakunin A.F.,
    J. Mol. Biol. (2007) 374, 1091-1103.
     
44. "Crystal structure of the human beta2 adrenergic G-protein-coupled receptor",
    Rasmussen S.G., Choi H.J., Rosenbaum D.M., Kobilka T.S., Thian F.S., Edwards P.C., Burghammer M., Ratnala V.R., Sanishvili R., Fischetti R.F., Schertler G.F., Weis W.I., and Kobilka B.K.,
    Nature (2007) 450, 383-387.
     
45. "GNAT-like strategy for polyketide chain initiation",
    Gu L., Geders T.W., Wang B., Gerwick W.H., Hakansson K., Smith J.L., and Sherman D.H.,
    Science (2007) 318, 970-974.
     
46. "Crystal structure of the ECH2 catalytic domain of CurF from Lyngbya majuscula. Insights into a decarboxylase involved in polyketide chain beta-branching",
    Geders T.W., Gu L., Mowers J.C., Liu H., Gerwick W.H., Hakansson K., Sherman D.H., and Smith J.L.,
    J. Biol. Chem. (2007) 282, 35954-35963.
     
47. "Transformation of X-ray Server from a set of WWW-accessed programs into WWW-based library for remote calls from X-ray data analysis software",
    Stepanov S.,
    Thin Solid films (2007) 515, 5700-5703.

    2006

48. "A new approach to wide-angle dynamical X-ray diffraction by deformed crystals",
    Podorov S., Faleev N., Pavlov K., Paganin D., Stepanov S., and Foerster E.,
    J. Appl. Crystallogr., (2006) 39,652-655.
     
49. "Structural and mechanistic insights into polyketide macrolactonization from polyketide-based affinity labels",
    Giraldes J.W., Akey D.L., Kittendorf J.D., Sherman D.H., Smith J.L., and Fecik R.A.,
    Nat. Chem. Biol. (2006) 2, 531-536.
     
50. "Structural basis for macrolactonization by the pikromycin thioesterase",
    Akey D.L., Kittendorf J.D., Giraldes J.W., Fecik R.A., Sherman D.H., and Smith J.L.,
    Nat. Chem. Biol. (2006) 2, 537-542.

    2005

51. "Structure of the Flavivirus helicase: implications for catalytic activity, protein interactions, and proteolytic processing",
    Wu J., Bera A.K., Kuhn R.J., and Smith J.L.,
    J. Virol. (2005) 79, 10268-10277.

    2004

52. "A ray-tracing study of the dependence of focal properties on surface figure error for a Kirkpatrick-Baez (K-B) mirror system",
    Xu S. and Fischetti R.F.,
    Synchrotron Radiation Instrumentation (2004) 705, 776-779.
     
53. "X-ray server: an online resource for simulations of X-ray diffraction and scattering",
    Stepanov S.,
    Proc. SPIE (2004) 5536, 16-26.
     
54. "How to make X-ray simulation software working of WWW: A simple recipe based on seven years of experience",
    Stepanov S.,
    Proc. SPIE (2004) 5536, 165-170.