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HCV sequence database
 
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Pixel

Show an image of an alignment with 1 pixel per residue

Purpose: This tool generates an image of an alignment using 1 or more colored pixel(s) for each residue, thus allowing errors in large alignments to be easily seen. See Pixel Explanation.

Input
Paste your alignment here
[Sample Input]
or upload your file
Options
Choose sequence type Guess (by composition)
Amino acids
DNA
Color scheme Default
Matches gray (relative to first sequence)
Matches white, mismatches red, indels black
Scale (each alignment residue will be a square of this many pixels per side)

Plotting code created by Will Fischer. Interface by Carla Kuiken. See How to cite.




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