Purpose: SNAP calculates synonymous and non-synonymous substitution rates based on a set of codon-aligned nucleotide sequences.
Details: Please read the Readme file before using this program! For alignments smaller than 40 sequences the results will be displayed on our web site. For larger alignments (more than 40 sequences) you will receive a job title and reference number and results will be emailed to you. Alternatively, you can download the Perl version of SNAP and process your data on your local machine. Input sequences must be codon-aligned nucleotides. The tool automatically recognizes several common sequence formats. If your input format is not accepted, web-based format conversion sites are available.
WARNING: Unaligned sequences or aligned sequences copied from Word (containing non-ASCII characters) may cause the program to crash or give meaningless output.
References: If you use SNAP in a paper, please reference both the HIV database website (www.hiv.lanl.gov) and the following paper. You may also need to reference other papers cited in the Readme file.
Release Notes: For details on releases click here.
Known Bugs: For known bugs click here.
Wish List: For desired new features click here.
