HIV sequence database

Recombinant HIV-1 Drawing Tool

Purpose: This tool maps your recombinant breakpoint data for HIV-1 onto a map of the HXB2 genome. The different subtypes that compose your genome appear as differently-colored regions in the map. Before using, please see Recombinant HIV-1 Drawing Tool Explanation.

Input

Upload text file of breakpoints	This is an Excel spreadsheet
Or enter breakpoint data here [Sample Input]
If the breakpoint data entered above are not expressed in HXB2 coordinates, check this box and paste sequence here	Non-HXB2 coordinates
Or upload sequence file here

last modified: Wed Aug 1 14:02 2012

Index of all tools	HIV BLAST	Quality Control
ADRA	HIVAlign	QuickAlign
Branchlength	Hypermut	Rainbow Tree
Codon Alignment	jpHMM at GOBICS	Recombinant HIV-1 Drawing Tool
Consensus Maker	Mosaic Vaccine Tool Suite	RIP
ELF	Motif Scan	SeqPublish
ElimDupes	N-Glycosite	Sequence Locator
Entropy	PCOORD	SNAP
FindModel	PepMap	SUDI Subtyping
Format Converter	PeptGen	SynchAlign
Gap Strip/Squeeze	PhyloPlace	Translate
GenBank Entry Generation	PhyML	TreeMaker
Gene Cutter	Pixel	TreeRate
Heatmap	Poisson-Fitter	VESPA
Hepitope	Protein Feature Accent	External Tools
Highlighter	Protein Structure