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Department of Energy Microbial Cell Project Archive
Understanding How a Cell Works
The Department of Energy (DOE) Microbial Cell Project was folded into the DOE Genomic Science program in FY 2002.
Proposed Department of Energy Microbial Cell Project
Understanding How a Cell Works

 
 
 

Knowing the complete DNA sequence of a microbe (the cell's instruction manual) enables us ...
 


...to make a complete inventory of all the cell's genes (its parts list). That information can be used...
 
 

...to identify each protein in the cell and to understand the protein's physical structure and function.  The final challenge is...
 
 


...to understand how all the cell's parts fit and work together to form a living system.

During the last decade, scientists have amassed millions of DNA sequences containing the complete genetic instructions for a growing list of microbes and viruses. These DNA sequences offer a virtual "parts lists" for life in its simplest form, but scientists do not know what many of the parts do. Furthermore, DNA sequences provide little information on how the parts work together to orchestrate the chemistry of life. (By analogy, a pile of auto parts would tell us very little about the complex function of an automobile.) In biology, the whole is much greater than the sum of the parts, and understanding this complexity is the exciting challenge science now faces. Revolutionary breakthroughs in genome sequencing, new methods of protein characterization, and access to powerful supercomputers now position scientists to begin to understand the complex pathways that give a microbial cell its life. The Microbial Cell Project is an exciting new initiative that will address these challenges. The Project builds on previous research sponsored by the Office of Science, including the Microbial Genome Program, itself a spinoff of the Department of Energy (DOE)-initiated Human Genome Program.

The Microbial Cell Project will support core missions of the Department of Energy. One of DOE's missions is to help ensure that the United States continues to have access to sources of affordable and environmentally friendly energy. While physical sciences have been the backbone of energy research, new concepts in the biological sciences will shape our energy future by providing ways to use living organisms to produce energy and clean the environment. Microbes have evolved for 3.8 billion years and have colonized almost every environment on Earth. In the process, they have developed an astonishingly diverse collection of capabilities that will help DOE meet its challenges in toxic waste cleanup, energy production, global climate change, and biotechnology.

To embark upon this journey will require the development of new technologies, analytical tools, and modeling capabilities. In addition to working with academic, nonprofit, and industrial partners, DOE will take advantage of the scientific talents available in its national laboratories. These talents include high-throughput genomic DNA sequencing, microbial biochemistry and physiology, imaging, and structural biology. National user facilities such as synchrotrons will play important roles, as will capabilities in high-performance computing. Interdisciplinary collaborations among biologists, chemists, physicists, engineers, and computer experts will be critical to this effort.

In the Microbial Cell Project, scientists will begin to write a comprehensive "owner's manual" for a microbial cell. Microbial cells have internal organization and complex control systems that allow them to respond to their environment. They can work as miniature chemistry laboratories, making unique products and carrying out specialized functions. Ultimately, understanding the complex functioning of a single microbial cell will enable science to go far beyond just exploiting the beneficial capabilities of microbes to meet DOE's missions. The knowledge gained will apply to cells in all living things. Thus the Microbial Cell Project represents a first step in moving from cataloguing molecular parts to constructing an integrative view of life at the level of a whole organismmicrobe, plant, or animal.

Contact Information

Dr. Daniel Drell, SC-72/GTN (301/903-4742, daniel.drell@science.doe.gov)
Dr. Anna Palmisano, SC-74/GTN (301/903-9963, anna.palmisano@science.doe.gov)
Dr. Gregory Dilworth, SC-17/GTN (301/903-2873, greg.dilworth@science.doe.gov)

Links for More Information

Microbial Genome Program Report 2000
U.S. DOE Microbial Genome Program
DOE Joint Genome Institute
Human Genome Project Information
Genome Channel and Genome Catalog
Protein Database
The Institute for Genome Research (TIGR)  now J. Craig Venter Institute
Natural and Accelerated Bioremediation Research (NABIR)
Global Change Research Program


published 02/28/00

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Last modified: Monday, September 12, 2011