2012
- "Direct observation of dynamics of thermal expansion using
pump-probe high-energy-resolution x-ray diffraction",
Stoupin S., March A.M., Wen H., Walko D.A., Li Y., Dufresne E.M., Stepanov S.A.,
Kim K.-J., Shvyd’ko Yu.V., Blank V.D., and Terentyev S.A.,
Phys. Rev. B (2012) 86, 054301(5).
- "Exploration of synchrotron Mössbauer microscopy with micrometer
resolution: forward and a new backscattering modality on natural samples",
Yan L., Zhao J., Toellner T.S., Divan R., Xu S., Cai Z., Boesenberg J.S.,
Friedrich J.M., Cramer S.P., and Alp E.E.,
J. Synchrotron Radiat. (2012) 19, 814-820.
2011
- "PID feedback control of monochromator thermal stabilization",
Yoder D.W., Makarov O., Corcoran S., and Fischetti R.F.,
Nucl. Instum. Meth. Phys. Res. A (2011) 649, 107-108.
- "Mini-beam collimator
applications at the Advanced Photon Source",
Xu S., Keefe L.J., Mulichak A., Yan L., Alp E.E., Zhao J., and Fischetti R.F.,
Nucl. Instum. Meth. Phys. Res. A (2011) 649, 104-106.
- "Alignment Protocol for Effective
use of Hard X-ray Quad collimator for micro-crystallography",
Xu S., Nagarajan V., Sanishvili R., and Fischetti R.F.,
Proc. SPIE (2011) 8125, 81250X1-81250X8.
- "Simulation and optimization of
a sub-micron beam for macromolecular crystallography using SHADOW and XOP at
GM/CA CAT at the APS",
Liu Z., Xu S., Yoder D., and Fischetti R.F.,
Proc. SPIE (2011) 8129, 81290E1-81290E8.
- "Structure and function of the RedJ protein, a thioesterase from
the prodiginine biosynthetic pathway in Streptomyces coelicolor",
Whicher J.R., Florova G., Sydor P.K., Singh R., Alhamadsheh M., Challis G.L.,
Reynolds K.A., and Smith J.L.,
J. Biol. Chem (2011) 286, 22558-22569.
- "Crystal Structure of a Zinc-dependent D-Serine Dehydratase from
Chicken Kidney",
Tanaka H., Senda M., Venugopalan N., Yamamoto A., Senda T., Ishida T., and Horiike K.,
J. Biol. Chem. (2011) 286, 27548-27558.
- "Terminal alkene formation by the thioesterase of curacin A biosynthesis:
structure of a decarboxylating thioesterase",
Gehret J.J., Gu L., Gerwick W.H., Wipf P., Sherman D.H., and Smith J.L.,
J. Biol. Chem. (2011) 286, 14445-14454.
- "Automated sample-scanning methods for radiation damage mitigation
and diffraction-based centering of macromolecular crystals",
Hilgart M.C., Sanishvili R., Ogata C.M., Becker M., Venugopalan N.,
Stepanov S., Makarov O., Smith J.L., and Fischetti R.F.,
J. Synchrotron Radiat. (2011) 18, 717-722.
- "Fast fluorescence techniques for crystallography beamlines",
Stepanov S., Hilgart M., Yoder D.W., Makarov O., Becker M., Sanishvili R.,
Ogata C.M., Venugopalan N., Aragão D., Caffrey M., Smith J.L., and
Fischetti R.F.,
J. Appl. Crystallogr. (2011) 44, 772-778.
- "Control system for the 2nd generation Berkeley automounters (BAM2)
at GM/CA-CAT macromolecular crystallography beamlines",
Makarov O., Hilgart M., Ogata C., Pothineni S., and Cork C.,
Nucl Instrum. & Methods Phys. Res. A (2011) 649, 87-90.
- "Radiation damage in protein crystals is reduced with a micron-sized
X-ray beam",
Sanishvili R., Yoder D.W., Pothineni S.B., Rosenbaum G., Xu S., Vogt S.,
Stepanov S., Makarov O.A., Corcoran S., Benn R., Nagarajan V., Smith J.L., and
Fischetti R.F.,
Proc. Natl. Acad. Sci. USA. (2011) 108, 6127-6132.
- "JBluIce-EPICS control system for macromolecular crystallography",
Stepanov S., Makarov O., Hilgart M., Pothineni S.B., Urakhchin A.,
Devarapalli S, Yoder D, Becker M, Ogata C, Sanishvili R, Venugopalan N.,
Smith J.L., and Fischetti R.F.,
Acta Crystallogr. D Biol. Crystallogr. (2011) 67, 176-188.
- "Structure, signaling mechanism and regulation of the natriuretic
peptide receptor guanylate cyclase",
Misono K.S., Philo J.S., Arakawa T., Ogata C.M., Qiu Y., Ogawa H., and Young H.S.,
FEBS J. (2011) 278, 1818-1829.
- "X-Ray Solution Scattering Studies of the Structural Diversity
Intrinsic to Protein Ensembles",
Makowski L., Gore D., Mandava S., Minh D., Park S., Rodi D.J., and Fischetti R.F.,
Biopolymers (2011) 95, 531-542.
- "WAXS studies of the structural diversity of hemoglobin in solution",
Makowski L., Bardhan J., Gore D., Lal J., Mandava S., Park S., Rodi D.J.,
Ho N.T., Ho C., and Fischetti R.F.,
J. Mol. Biol. (2011) 408, 909-921.
2010
- "Design and manufacture of mini-beam collimators for macromolecular
crystallography at the GM/CA-CAT at APS",
Xu S., Nagarajan V., and Fischetti R.F.,
Diamond Light Source Proc. (2010) 1, 1-4.
- "One-Micron Beams for Macromolecular Crystallography at GM/CA-CAT",
Yoder D.W., Sanishvili R., Vogt S., Xu S., Makarov O., Benn R., Corcoran S.,
and Fischetti, R.F.,
AIP Conf. Proc. (2010) 1234, 419-422.
- "Micro-Crystallography Developments at GM/CA-CAT at the APS",
Xu S., Makarov O., Benn R., Yoder D.W., Stepanov S., Becker M., Corcoran S.,
Hilgart M., Nagarajan V., Ogata C.M., Pothineni S., Sanishvili R., Smith J.L.,
and Fischetti R.F.,
AIP Conf. Proc. (2010) 1234, 905-908.
- "In crystallo posttranslational modification within a MauG/pre-methylamine
dehydrogenase complex",
Jensen L.M., Sanishvili R., Davidson V.L., and Wilmot C.M.,
Science (2010) 327, 1392-1394.
- "Characterization of the secondary binding sites of Maclura pomifera
agglutinin by glycan array and crystallographic analyses",
Huang J., Xu Z., Wang D., Ogata C.M., Palczewski K., Lee X., and Young N.M.,
Glycobiology (2010) 20, 1643-1653.
- "Biochemical and structural characterization of the tautomycetin
thioesterase: analysis of a stereoselective polyketide hydrolase",
Scaglione J.B., Akey, D.L., Sullivan R., Kittendorf J.D., Rath C.M., Kim E.S.,
Smith J.L., and Sherman D.H.,
Angew. Chem. Int. Ed. Engl. (2010) 49, 5726-5730.
- "Crystal structures of dehydratase domains from the curacin polyketide
biosynthetic pathway",
Akey D.L., Razelun J.R., Tehranisa J., Sherman D.H., Gerwick W.H., and Smith, J.L.,
Structure (2010) 18, 94-105.
- "Structure of the Rift Valley fever virus nucleocapsid protein
reveals another architecture for RNA encapsidation",
Raymond D.D., Piper M.E., Gerrard S.R., and Smith J.L.,
Proc. Natl. Acad. Sci. USA (2010) 107, 11769-11774.
- "Conformational switch triggered by alpha-ketoglutarate in a
halogenase of curacin A biosynthesis",
Khare D., Wang B., Gu L., Razelun J., Sherman D.H., Gerwick W.H., Hakansson K.,
and Smith J.L.,
Proc. Natl. Acad. Sci. USA (2010) 107, 14099-14104.
- "Structural basis for substrate activation and regulation by
cystathionine beta-synthase (CBS) domains in cystathionine
{beta}-synthase",
Koutmos M., Kabil O., Smith J.L., and Banerjee R.,
Proc. Natl. Acad. Sci. USA (2010) 107, 20958-20963.
2009
- "Rastering strategy for screening and centring of microcrystal
samples of human membrane proteins with a sub-10 μm size X-ray synchrotron
beam",
Cherezov V., Hanson M.A., Griffith M.T., Hilgart M.C., Sanishvili R., Nagarajan V.,
Stepanov S., Fischetti R.F., Kuhn P., and Stevens R.C.,
J. Royal Soc. Interface (2009) 6, S587-S597.
- "Mini-beam collimator enables microcrystallography experiments on
standard beamlines",
Fischetti R.F., Xu S., Yoder D.W., Becker M., Nagarajan V.,
Sanishvili R., Hilgart M.C., Stepanov S., Makarov O., and Smith J.L.,
J. Synchrotron Radiat. (2009) 16, 217-225.
- "Structural and biochemical characterization of the type II
fructose-1,6-bisphosphatase GlpX from Escherichia coli",
Brown G., Singer A., Lunin V.V., Proudfoot M., Skarina T., Flick R.,
Kochinyan S., Sanishvili R., Joachimiak A., Edwards A.M., Savchenko A.,
and Yakunin, A.F.,
J. Biol. Chem. (2009) 284, 3784-3792.
- "Insights into tRNA-dependent amidotransferase evolution and
catalysis from the structure of the Aquifex aeolicus enzyme",
Wu J., Bu W., Sheppard K., Kitabatake M., Kwon S.T., Soll D., and Smith J.L.,
J. Mol. Biol. (2009) 391, 703-716.
- "Insights into the reactivation of cobalamin-dependent methionine
synthase",
Koutmos M., Datta S., Pattridge K.A., Smith J.L., and Matthews R.G.,
Proc. Natl. Acad. Sci. USA (2009) 106, 18527-18532.
- "Structure and functional analysis of RifR, the type II thioesterase
from the rifamycin biosynthetic pathway",
Claxton H.B., Akey D.L., Silver M.K., Admiraal S.J., and Smith J.L.,
J. Biol. Chem. (2009) 284, 5021-5029.
- "Structural basis for binding specificity between subclasses of
modular polyketide synthase docking domains",
Buchholz T.J., Geders T.W., Bartley F.E. 3rd, Reynolds K.A., Smith J.L., and
Sherman D.H.,
ACS Chem. Biol. (2009) 4, 41-52.
2008
- "A 7μm mini-beam improves diffraction data from small or
imperfect crystals of macromolecules",
Sanishvili R., Nagarajan V., Yoder D., Becker M., Xu S., Corcoran S.,
Akey D.L., Smith J.L., and Fischetti R.F.,
Acta Crystallogr D Biol. Crystallogr. (2008) 64, 425-435.
- "Characterization of protein fold by wide-angle X-ray solution
scattering",
Makowski L., Rodi D.J., Mandava S., Devarapalli S., and Fischetti R.F.,
J. Mol. Biol. (2008 383, 731-744.
- "Fitting dynamical X-ray diffraction data over the World Wide Web",
Stepanov S. and Forrest R.,
J. Appl. Crystallogr., (2008) 41 958-962.
- "Metal active site elasticity linked to activation of homocysteine
in methionine synthases",
Koutmos M., Pejchal R., Bomer T.M., Matthews R.G., Smith J.L., and Ludwig M.L.,
Proc. Natl. Acad. Sci. USA (2008) 105, 3286-3291.
2007
- "EPICS controlled sample mounting
robots at the GM/CA CAT",
Makarov O.A., Benn R., Corcoran S., Devarapalli S., Fischetti R., Hilgart M.,
Smith W.W., Stepanov S., and Xu S.,
Nucl Instrum. & Methods Phys. Res. A (2007) 582, 156-158.
- "Optical Performance of the GM/CA-CAT canted undulator beamlines
for protein crystallography",
Fischetti R.F., Yoder D.W., Xu S., Stepanov S., Makarov O., Benn R.,
Corcoran S., Diete W., Schwoerer-Boehing M., Signorato R., Schroeder L.,
Berman L., Viccaro P.J., and Smith J.L.,
AIP Conf. Proc. (2007) 879, 754-757.
- "Design and performance of the compact YAG imaging system for
diagnostics at GMCA beamlines at APS",
Xu S.L., Fischetti R.F., Benn R., and Corcoran S.,
AIP Conf. Proc. (2007) 879, 1403-1406.
- "Design and performance of a compact collimator on GM/CA-CAT at
the Advanced Photon Source",
Xu S. and Fischetti R.F.,
Proc. SPIE (2007) 6665, 66650X1-66650X8.
- "Molecular basis of the
antimutagenic activity of the house-cleaning inosine triphosphate
pyrophosphatase RdgB from Escherichia coli",
Savchenko A., Proudfoot M., Skarina T., Singer A., Litvinova O., Sanishvili R.,
Brown G., Chirgadze N., and Yakunin A.F.,
J. Mol. Biol. (2007) 374, 1091-1103.
- "Crystal structure of the human beta2 adrenergic G-protein-coupled
receptor",
Rasmussen S.G., Choi H.J., Rosenbaum D.M., Kobilka T.S., Thian F.S.,
Edwards P.C., Burghammer M., Ratnala V.R., Sanishvili R., Fischetti R.F.,
Schertler G.F., Weis W.I., and Kobilka B.K.,
Nature (2007) 450, 383-387.
- "GNAT-like strategy for polyketide chain initiation",
Gu L., Geders T.W., Wang B., Gerwick W.H., Hakansson K., Smith J.L., and Sherman D.H.,
Science (2007) 318, 970-974.
- "Crystal structure of the ECH2 catalytic domain of CurF from Lyngbya
majuscula. Insights into a decarboxylase involved in polyketide chain
beta-branching",
Geders T.W., Gu L., Mowers J.C., Liu H., Gerwick W.H., Hakansson K.,
Sherman D.H., and Smith J.L.,
J. Biol. Chem. (2007) 282, 35954-35963.
- "Transformation of X-ray Server from a set of WWW-accessed programs
into WWW-based library for remote calls from X-ray data analysis software",
Stepanov S.,
Thin Solid films (2007) 515, 5700-5703.
2006
- "A new approach to wide-angle
dynamical X-ray diffraction by deformed crystals",
Podorov S., Faleev N., Pavlov K., Paganin D., Stepanov S., and Foerster E.,
J. Appl. Crystallogr., (2006) 39,652-655.
- "Structural and mechanistic insights into polyketide macrolactonization
from polyketide-based affinity labels",
Giraldes J.W., Akey D.L., Kittendorf J.D., Sherman D.H., Smith J.L., and Fecik R.A.,
Nat. Chem. Biol. (2006) 2, 531-536.
- "Structural basis for macrolactonization by the pikromycin thioesterase",
Akey D.L., Kittendorf J.D., Giraldes J.W., Fecik R.A., Sherman D.H., and Smith J.L.,
Nat. Chem. Biol. (2006) 2, 537-542.
2005
- "Structure of the Flavivirus helicase: implications for catalytic
activity, protein interactions, and proteolytic processing",
Wu J., Bera A.K., Kuhn R.J., and Smith J.L.,
J. Virol. (2005) 79, 10268-10277.
2004
- "A ray-tracing study
of the dependence of focal properties on surface figure error for a
Kirkpatrick-Baez (K-B) mirror system",
Xu S. and Fischetti R.F.,
Synchrotron Radiation Instrumentation (2004) 705, 776-779.
- "X-ray server: an online resource
for simulations of X-ray diffraction and scattering",
Stepanov S.,
Proc. SPIE (2004) 5536, 16-26.
- "How to make X-ray simulation
software working of WWW: A simple recipe based on seven years of
experience",
Stepanov S.,
Proc. SPIE (2004) 5536, 165-170.
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