Sequence Alignment from Li et al. 2010
High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men

• Download Alignment (click here)

  This zip archive contains a fasta-formatted file of 1407 aligned full-length HIV-1 subtype B env sequences from 28 acutely infected and 2 chronically infected study participants. The alignment-file format is gapped fasta, with ambiguously aligned sites excluded.

  Reference:
  Li H, Bar KJ, Wang S, Decker JM, Chen Y, Sun C, Salazar-Gonzalez JF, Salazar MG, Learn GH, Morgan CJ, Schumacher JE, Hraber P, Giorgi EE, Bhattacharya T, Korber BT, Perelson AS, Eron JJ, Cohen MS, Hicks CB, Haynes BF, Markowitz M, Keele BF, Hahn BH, Shaw GM.
  High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men.
  PLOS Pathogens 2010 May 13;6(5):e1000890. PMID 20485520.