• Map_Data Records
• Maps

• C-bands of Chinese Spring From Gill et al., 1991
• Triticeae consensus map. Groups 1-3 and 6. From Van Deynze et al., 1995; Nelson et al., 1995; and Marino et al., 1996
• Triticum aestivum CS x CNN 1A map From Dubcovsky et al., 1995
• Triticum aestivum CS x CNN 1A mapping data From Dubcovsky et al., 1995
• Triticum durum x T. dicoccoides 6A, 6B map From Chen et al., 1994
• Triticum monococcum DV92 x G3116 map From Dubcovsky et al., 1996
• Triticum monococcum DV92 x G3116 mapping data From Jorge Dubcovsky, Feb 1996
• Triticum monococcum G1777 x G2528 1A^m^ map From Dubcovsky et al., 1995 and Van Deynze et al., 1995
• Triticum monococcum G1777 x G2528 1A^m^ mapping data From Dubcovsky and Dvorak, 1995
• Triticum monococcum x T. aestivum 1A map From Dubcovsky et al., 1995 and Van Deynze et al., 1995
• Triticum monococcum x T. aestivum 1A mapping data From Dubcovsky and Dvorak, 1995
• Triticum tauschii linkage data From Gill, 1993
• Triticum tauschii map From Gill et al., 1993
• Triticum tauschii mapping data From Gill, 1993
• Wheat CS x Spelta map From Liu and Tsunewaki, 1991
• Wheat W7984 x Opata85
  • Map From Van Deynze et al.,1995; Nelson et al.,1995; and Marino et al., 1996
  • Group 1 mapping data From Van Deynze et al., 1994
  • Groups 2 and 3 mapping data From Nelson et al., 1995
  • Groups 4,5,7 mapping data From Nelson et al., 1995
  • Group 6 mapping data From Marino et al., 1995
• Wheat W7984 x Opata85 Update. From Sorrells and Bermudez, 2000
  • Group 3 maps
  • Group 3 mapping data
• Wheat consensus map From Gale et al., 1995
• Wheat gene map From Hart et al., 1993
• XNor regions of group 1 and 5 chromosomes From Dubcovsky and Dvorak, 1995
• Nomenclature of Biochemical and Molecular Loci in Wheat From Hart, 1994

• Chromosome aberrations in "Chinese Spring" genetic stocks
  Deletions, misidentifications and other things to be aware of when mapping with the classic CS nullisomic-tetrasomic and ditelosomic stocks. From Katrien Devos.
• Komugi electronic version of the Wheat Gene Catalogue.
• Catalogue of Gene Symbols for Wheat - 1998 edition
  by R.A. McIntosh, G.E. Hart, K.M. Devos, M.D. Gale and W.J. Rogers
• Catalogue of Gene Symbols for Wheat - 1999 supplement
  by R.A. McIntosh, G.E. Hart, K.M. Devos and W.J. Rogers
• Catalogue of Gene Symbols for Wheat - 2000 supplement
  by R.A. McIntosh, K.M. Devos, J. Dubcovsky and W.J. Rogers
• GrainGenes Autoradiogram Images I: Polymorphisms mapped in the wheat synthetic W7984 x Opata M 85 mapping population, chromosomes 1-3, with links back to their GrainGenes Image records
• GrainGenes Autoradiogram Images II: Polymorphisms mapped in the wheat synthetic W7984 x Opata M 85 mapping population, chromosomes 4, 5, 6, and 7, with links back to their GrainGenes Image records
• Aegilops tauschii markers From the high-resolution map of Boyko et al. 1998

• Appels, Comparative map of chromosome 1D, T.tauschii and T.aestivum
• Map of T.tauschii chromosome 1D
• 1B physical vs. genetic maps 1B physical vs. genetic maps
• Group 1 map comparison, part 1
• Group 1 map comparison, part 2
• Synthetic x Opata group 1 maps
• Synthetic x Opata group 2 maps
• Synthetic x Opata group 3 maps
• Synthetic x Opata group 4 maps
• Synthetic x Opata group 5 maps
• Synthetic x Opata group 6A map
• Synthetic x Opata group 6B map
• Synthetic x Opata group 6D map
• Synthetic x Opata group 7 maps
• Triticeae group 1 consensus, Sorrells
• Triticeae group 2 consensus, Sorrells
• Triticeae group 3 consensus, Sorrells
• Triticeae group 6 consensus, Hart
• 1R physical vs. genetic maps
• Ahn-S, 1993 Fig. 1
• Ahn-S, 1993 Fig. 2
• CS C-bands, A genome
• CS C-bands, B genome
• CS C-bands, D genome
• Dubcovsky, 1995 Fig. 1a
• Dubcovsky, 1995 Fig. 1b
• Triticeae 1 vs. rice 5, 10 vs. oat A
• Wheat group 1 genes
• Wheat group 2 genes
• Wheat group 3 genes
• Wheat group 4 genes
• Wheat group 5 genes
• Wheat group 6 genes
• Wheat group 7 genes

Barley

• Map_Data Records
• Maps

• Barley
  • Barley 2H and 3H maps from David Laurie From Laurie et al., 1993
  • Barley Chebec x Harrington map From Peter Langridge et al., Sep 1996
  • Barley Chebec x Harrington mapping data From Peter Langridge et al., Sep 1996
  • Barley Clipper x Sahara map From Peter Langridge et al., Sep 1996
  • Barley Clipper x Sahara mapping data From Peter Langridge et al., Sep 1996
  • Barley Galleon x Haruna nijo map From Peter Langridge et al., Sep 1996
  • Barley Galleon x Haruna nijo mapping data From Peter Langridge et al., Sep 1996
  • Barley Harrington x TR306 QTL dataset From Kasha et al., 1995 and Tinker et al., in press
  • Barley Harrington x TR306 map From Kleinhofs, 1994
  • Barley Harrington x TR306 mapping data From Kleinhofs, 1994
  • Barley Igri x Franka map From Graner et al., 1991 and 1994
  • Barley Igri x Franka mapping data From Graner, 1994
  • Barley Igri x Triumph flowering-time map From Laurie et al., 1995
  • Barley, L94 x Vada map From Qi, 1998
  • Barley NABGMP probes and markers From Kleinhofs, 1994-1997.
    For the most current version, see the Barley Genomics site at WSU
  • Barley Proctor x Nudinka AFLP autoradiogram (110 KBytes) .jpg From Heun, 1996. Description
  • Barley Proctor x Nudinka AFLP, RFLP map From Becker et al., 1995
  • Barley Proctor x Nudinka AFLP, RFLP mapping data From Heun, 1996 and Becker et al., 1995
  • Barley Steptoe x Morex NABGMP trait dataset (Steptoe x Morex Barley Mapping Population)
  • Barley Steptoe x Morex map From Kleinhofs, 1993
  • Barley Steptoe x Morex mapping data From Kleinhofs, 1994
  • Barley VADA x H. Spontaneum map From Graner, 1991
  • Barley Vogelsanger Gold x Alf map From Giese et al., 1994 and Jensen, 1987
  • Barley Vogelsanger Gold x Tystofte Prentice map From Giese, 1995
  • Barley chromosome numbering reference card
  • Barley consensus map, Adelaide From Langridge, 1995
  • Barley consensus map, Adelaide, imagesFrom Langridge, 1995
  • Barley consensus map, Wageningen From Qi, 1996
  • Barley gene map From Franckowiak, 1995; Forster, 1996; and Jensen, 1996
  • Barley gene map images From Franckowiak, 1995; Forster, 1996; and Jensen, 1996
  • Barley gene map, 7-chromosome From Jerry Franckowiak and Udda Lundqvist, Nov 1996
  • Barley gene map, 7-chromosome, images From Jerry Franckowiak and Udda Lundqvist, Nov 1996

• Barley: WWW Documents

  Note: Polymorphism datasets that include both mapped and unmapped polymorphisms are listed both here on the Maps and Map Data page and on the Germplasm and Genetic Stocks page.

  • The Morex x Barke DH mapping populationGBS data from Nils Stein and Jesse Poland, 2012
  • Barley physical/genetic map Translocation breakpoints vs. markers mapped in Igri x Franka. From Gottfried Kuenzel.
  • Table of STS Primers Used for PCR-Mapping of Translocation Breakpoints In Barley. This table, provided by Gottfried Kuenzel, lists the RFLP clone names, STS primer sequences, amplified fragment length, annealing temperature and provides links to the GrainGenes or EMBL records of the clone sequences.
  • Development of AFLP Markers in Barley Sixteen barley lines x 34 primer combinations. From Xiaoquan Qi and Pim Lindhout, MGG 254:330, 1997. Used in the L94 x Vada AFLP map.
  • Barley Mapping and QTL Analysis of Three Populations from the University of Adelaide Mapping and QTL analysis for three populations are provided: (1) Galleon x Haruna nijo; (2) Chebec x Harrington; and (3) Clipper x Sahara. QTL analyses are provided for phenotypes of alpha-amylase (all), beta amylase (all), glucanase (all), free-limit dextrinase (1,2), total limit dextrinase (1,2), awn emergence (2), juvenile stage (2), leaf number (2), plant height (2), 1000 kernel weight (2), seed dormancy (2), seed length (2), seed width (2), seed length/width ratio (2), CCN resistance (2), and cyst nematode resistance (3)
  • Barley Harrington/TR306 QTL Study Contains phenotypic data for the DH progeny, including info on grain yield, days to heading, days to maturity, plant height, lodging severity, kernel weight, test weight, and map and marker files
  • The Steptoe x Morex Barley Mapping Population From Hayes et al., 1996
  • The Dicktoo x Morex Barley Mapping Population From Hayes et al., 1997
  • The Harrington x Morex Barley Mapping Population From Hayes et al., 2001
  • The Shiri x Galena Barley Mapping Population From Hayes et al., 2001
  • Wheat/Barley Addition Line PCR Gels from STS Primers: From Tom Blake's barley genetics lab at Montana State University. Also has web-formatted barley genetics articles and data
  • Polymorphisms for markers linked to Rpt4, resistance to spot form of net blotch From Kevin Williams, South Australian Research and Development Institute (SARDI).
  • Barley Genetics Newsletters Published by the American Malting Barley Association

• Barley: Maps as line drawings
  • DeScenzo, 1994 Fig. 2 (High resolution map of Hor1/Hor2 region of barley chromosome 1HS)
  • Barley consensus maps (most images downloadable only, not viewable)
  • 1H physical vs. genetic map
  • 1H translocation breakpoints
  • Barley Genes Chromosome 1H
  • Barley Genes Chromosome 2H
  • Barley Genes Chromosome 4H
  • Vogelsanger Gold x Alf chromosome 1
  • Vogelsanger Gold x Alf chromosome 2
  • Vogelsanger Gold x Alf chromosome 5
  • Vogelsanger Gold x Alf chromosome 6
  • Vogelsan ger Gold x Alf chromosomes 3 and 4

• Barley: Information from other Internet Sites
  • North American Barley Genome Mapping Project, USA has administrative information on NABGMP and articles on QTL detection, barley diseases, malting quality, the 1995 report of the NABGMP, plus more
  • The Oregon Wolfe Barleys A collaborative tool for genetics instruction and research using barley as a model system

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  Rye

• Rye: GrainGenes Database queries
  • Map_Data Records
  • Maps

• Rye
  • Rye Ds2 x RxL10 map From Katrien Devos, Aug 1996
  • Rye E x R map From Yolanda Loarce, Feb 1997
  • Rye E x R mapping data From Yolanda Loarce, Feb 1997
  • Rye UC90 x E map From Perry Gustafson, Dec 1996

• Rye: WWW Documents
  • 1R physical vs. genetic maps
  • Appels 1R comparison map
  • Triticeae 1 vs. rice 5, 10 vs. oat A

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  Oats

• Oats: GrainGenes Database queries
  • Map_Data Records
  • Maps

  • Oats
    • A. atlantica x A. hirtula map From Van Deynze et al., 1995 and O'Donoughue et al., 1992
    • A. atlantica x A. hirtula mapping data From Van Deynze et al., 1995
    • A. strigosa x A. wiestii map From Rayapati et al., 1994
    • Kanota x Ogle QTL dataset From Siripoonwiwat, 1996
    • Kanota x Ogle oat map From O'Donoughue et al., 1995
    • Kanota x Ogle oat mapping data From O'Donoughue et al., 1995

  • Oats: WWW Documents
    • Inventory of oat PCR markers   SSRs, SNPs, SCARs etc. From Howard Rines and Nick Tinker.
    • Autoradiogram Images, Kanota x Ogle Hexaploid Map: polymorphisms mapped in the Oat Kanota x Ogle hexaploid mapping population, chromosomes 1-38, with hyperlinks back to their GrainGenes Image records
    • Files for the A. strigosa x A. wiestii AFLP map. (GrainGenes map "Diploid Oat, AFLP")   From Roger Wise
      Map Manager data (June 2001) and .PDF files of the map drawings. The latest version of the dataset is available directly from rpwise@iastate.edu.

  • Oats: Maps as Line Drawings
    • Linkage groups A and B from A.atlantica x A.hirtula
    • Linkage groups C and D from A.atlantica x A.hirtula
    • Linkage groups E, F, and G from A.atlantica x A.hirtula
    • Linkage groups A, B, and C from A.atlantica x A.hirtula with conserved segments from homoeologous Triticeae chromosomes superimposed
    • Linkage groups D, E, F, and G from A.atlantica x A.hirtula with conserved segments from homoeologous Triticeae chromosomes superimposed
    • Linkage groups A, B, and C from A.atlantica x A.hirtula with conserved segments from homoeologous rice chromosomes superimposed
    • Linkage groups D, E, F, and G from A.atlantica x A.hirtula with conserved segments from homoeologous rice chromosomes superimposed
    • Linkage groups A, B, and C from A.atlantica x A.hirtula with conserved segments from homoeologous maize chromosomes superimposed
    • Linkage groups D, E, F, and G from A.atlantica x A.hirtula with conserved segments from homoeologous maize chromosomes superimposed
    • Oat KxO linkage groups 1 and 2
    • Oat KxO linkage groups 3 and 4
    • Oat KxO linkage groups 5 and 6
    • Oat KxO linkage groups 7, 8, and 9
    • Oat KxO linkage groups 10, 11, and 12
    • Oat KxO linkage groups 13 and 14
    • Oat KxO linkage groups 15 and 16
    • Oat KxO linkage groups 17, 18, and 19
    • Oat KxO linkage groups 20 and 21
    • Oat KxO linkage groups 22 and 23
    • Oat KxO linkage groups 24, 25, and 26
    • Oat KxO linkage groups 27, 28, and 29
    • Oat KxO linkage groups 30, 31, and 32
    • Oat KxO linkage groups 33, 34, and 35
    • Oat KxO linkage groups 36, 37, and 38
    • Triticeae 1 vs. rice 5, 10 vs. oat A

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    Sugarcane

  • Sugarcane: GrainGenes Database queries
    • Map_Data Records
    • Maps

  • Sugarcane
    • CU,CIBR 1995 map From da Silva et al., 1995
    • CU,CIBR 1995 mapping data From Sobral, 1993
    • Cornell 1993 map From da Silva et al., 1993
    • Cornell 1993 mapping data From da Silva 1993

  • Sugarcane: Maps as Line Drawings
    • Saccharum, CU/CIBR Homology Group 1
    • Saccharum, CU/CIBR Homology Group 2
    • Saccharum, CU/CIBR Homology Group 3
    • Saccharum, CU/CIBR Homology Group 4
    • Saccharum, CU/CIBR Homology Group 5
    • Saccharum, CU/CIBR Homology Group 6
    • Saccharum, CU/CIBR Homology Group 7
    • Saccharum, CU/CIBR Homology Group 8
    • Saccharum, CU/CIBR Homology Group Unassigned

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    Cross-species

  • Cross-species: GrainGenes Database Queries
    • MultiMaps
    • All Primer Sequences . All PCR Primers currently in GrainGenes, along with links to their corresponding Probe records

  • Cross-species
    • Comparative Map of Rice, Wheat, Maize From Ahn et al., 1993
    • Triticeae Consensus Map From Van Deynze et al., 1995; Nelson et al., 1995; and Marino et al., 1996

  • Cross-species: WWW Documents
    • Standard List for AFLP® Primer Nomenclature
    • This list was generously provided by KeyGene. AFLP® is a registered trademark of Keygene N.V.
      
    • Anchor Probes for Comparative Mapping of Grass Species: A study to identify and characterize a set of DNA probes useful for comparative mapping among several Gramineae species
    • R Gene Homologues in Cereals Amino acid sequence comparison of rice and barley NBS-LRR resistance gene homologues and resistance genes from flax, Arabidopsis and tobacco

  • Cross-species: Maps as Line Drawings
    • RFLP map of rice with corresponding wheat chromosome in parentheses
    • Conserved linkage between maize chromosome 2 and rice chromosome 4 with corresponding loci on wheat chromosome2
    • Triticeae 1 vs. rice 5, 10 vs. oat A

  • Cross-species: Information from other Internet sites
    • Grains-related
      • Gramene A comparative mapping resource for grains
    • Plant-related
      • NAL Plant Genome Data and Information Center
    • Biology-related
      • QTL Cartographer QTL Cartographer can perform many analyses for mapping QTL, including interval mapping, composite interval mapping and multiple traits/environments analysis. All of the information about QTL Cartographer is on-line, including the detailed manual. There is also a very user-friendly Windows version of QTL Cartographer. Best of all, it's free.
      • Molecular Biologist's Desk Reference contains reference information about the genetic code, amino acids and proteins, molecular biology protocols, and related journals
      • GenomeNet from Japan Includes a superbly integrated set of databases collectively called DBGET. Japan's finest
      • Johns Hopkins University Bioinformatics Webserver Allows you to make searches on Prot-Web, a collection of Protein Databases which includes OWL, NRL_3D, PIR(1-3), EC-Enzyme, GenQuest, and REBASE
      • Medline Subset in Molecular Genetics Can be searched using this easy-to-fill-in form. Approximately 700,000 citations are included in this subset. Very highly recommended
      • Molecular Biologist's Desk Reference Contains reference information about the genetic code, amino acids and proteins, molecular biology protocols, and related journals
      • National Institutes of Health Molecular Biology Databases NIH provides this page of links to databases specializing in DNA and protein sequences
      • Online Biology Degree Biomolecular Websites and Resources.

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    Maps as Line Drawings

    • All maps
      
    • Wheat
      
    • Barley
    • Rye
    • Oats
    • Sugarcane
    • Cross-species

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