Projects:GSK, LPG Liver Cancer, NCI60, Rembrandt AST, Rembrandt GBM, Rembrandt MIXED, Rembrandt OLIGO, Rembrandt UNKNOWN, TARGET ALL, TARGET NBL, TCGA BLCA, TCGA BRCA, TCGA CESC, TCGA COAD, TCGA GBM, TCGA HNSC, TCGA KIRC, TCGA KIRP, TCGA LGG, TCGA LIHC, TCGA LUAD, TCGA LUSC, TCGA OV, TCGA PAAD, TCGA PRAD, TCGA READ, TCGA STAD, TCGA THCA, TCGA UCEC, TSP Lung
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GSK project:
Gene-based viewcopy numberGSKAffymetrixGene Copy Number: GSK RefNorm AffymetrixLaunch viewer (w/annotations)
Genome-based viewGenome Copy Number: GSK RefNorm AffymetrixLaunch viewer (w/annotations)

LPG Liver Cancer project:
Gene-based viewcopy numberNCI LPGAffymetrixGene Copy Number: LPG Liver Cancer Paired AffymetrixLaunch viewer
Genome-based viewGenome Copy Number: LPG Liver Cancer Paired AffymetrixLaunch viewer

NCI60 project:
Gene-based viewcopy numberNCI60IlluminaGene Copy Number: NCI60 RefNorm IlluminaLaunch viewer
gene expressionNCI_CCRAffymetrixNCI60 Gene Expression Affymetrix All GenesLaunch viewer
NCI60 Gene Expression Affymetrix Top 5% Most Variable GenesLaunch viewer
NCI60 Gene Expression Clustered By Top 5% Most Variable GenesLaunch viewer
Genome-based viewcopy numberNCI60IlluminaGenome Copy Number: NCI60 RefNorm IlluminaLaunch viewer

Rembrandt AST project:
Gene-based viewcopy numberRembrandtAffymetrixGene Copy Number: Rembrandt Astrocytoma AffymetrixLaunch viewer (w/annotations)
Genome-based viewGenome Copy Number: Rembrandt Astrocytoma AffymetrixLaunch viewer (w/annotations)

Rembrandt GBM project:
Gene-based viewcopy numberNCIAffymetrixGene Copy Number: Rembrandt GBM PairedLaunch viewer (w/annotations)
Gene Copy Number: Rembrandt GBM UnpairedLaunch viewer (w/annotations)
Gene Copy Number: Rembrandt GBM NormalLaunch viewer (w/annotations)
Genome-based viewGenome Copy Number: Rembrandt GBM PairedLaunch viewer (w/annotations)
Genome Copy Number: Rembrandt GBM UnpairedLaunch viewer (w/annotations)
Genome Copy Number: Rembrandt GBM NormalLaunch viewer (w/annotations)

Rembrandt MIXED project:
Gene-based viewcopy numberRembrandtAffymetrixGene Copy Number: Rembrandt Mixed AffymetrixLaunch viewer (w/annotations)
Genome-based viewGenome Copy Number: Rembrandt Mixed AffymetrixLaunch viewer (w/annotations)

Rembrandt OLIGO project:
Gene-based viewcopy numberRembrandtAffymetrixGene Copy Number: Rembrandt Oligodendroglioma AffymetrixLaunch viewer (w/annotations)
Genome-based viewGenome Copy Number: Rembrandt Oligodendroglioma AffymetrixLaunch viewer (w/annotations)

Rembrandt UNKNOWN project:
Gene-based viewcopy numberRembrandtAffymetrixGene Copy Number: Rembrandt Unknown AffymetrixLaunch viewer (w/annotations)
Genome-based viewGenome Copy Number: Rembrandt Unknown AffymetrixLaunch viewer (w/annotations)

TARGET ALL project:
Gene-based viewcopy number, mutationStJude, NCIAffymetrixGene Copy Number and Mutation: TARGET ALLLaunch viewer (w/annotations)
copy numberGene Copy Number: TARGET ALLLaunch viewer (w/annotations)
Genome-based viewcopy number, mutationGenome Copy Number and Mutation: TARGET ALLLaunch viewer (w/annotations)
copy numberGenome Copy Number: TARGET ALLLaunch viewer (w/annotations)

TARGET NBL project:
Gene-based viewExonTARGET NBLAffymetrix HuEx1TARGET NBL Exon array HuEx1: Clustered By All Core GenesLaunch viewer (w/annotations)
TARGET NBL Exon array HuEx1: Clustered By Top 5% Most Variable GenesLaunch viewer (w/annotations)
TARGET NBL Exon array HuEx1: Top 5% Most Variable GenesLaunch viewer (w/annotations)
copy numberIllumina550KGene Copy Number: TARGET NBL Normal Illumina550KLaunch viewer (w/annotations)
Gene Copy Number: TARGET NBL Paired Illumina550KLaunch viewer (w/annotations)
Gene Copy Number: TARGET NBL Unpaired Illumina550KLaunch viewer (w/annotations)
Genome-based viewGenome Copy Number: TARGET NBL Normal Illumina550KLaunch viewer (w/annotations)
Genome Copy Number: TARGET NBL Paired Illumina550KLaunch viewer (w/annotations)
Genome Copy Number: TARGET NBL Unpaired Illumina550KLaunch viewer (w/annotations)

TCGA BLCA project:
Gene-based viewcopy numberBroadGenome_Wide_SNP_6Gene Copy Number: TCGA BLCA Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)
Genome-based viewGenome Copy Number: TCGA BLCA Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)

TCGA BRCA project:
Gene-based viewcopy numberBroadGenome_Wide_SNP_6Gene Copy Number: TCGA BRCA Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)
gene expressionUNCAgilentTCGA BRCA UNC Gene Expression Agilent Top 5% Most Variable GenesLaunch viewer (w/annotations)
TCGA BRCA UNC Gene Expression Agilent: Clustered By All GenesLaunch viewer (w/annotations)
TCGA BRCA UNC Gene Expression Agilent: Clustered By Top 5% Most Variable GenesLaunch viewer (w/annotations)
Genome-based viewcopy numberBroadGenome_Wide_SNP_6Genome Copy Number: TCGA BRCA Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)

TCGA CESC project:
Gene-based viewcopy numberBroadGenome_Wide_SNP_6Gene Copy Number: TCGA CESC Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)
Genome-based viewGenome Copy Number: TCGA CESC Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)

TCGA COAD project:
Gene-based viewcopy numberBroadGenome_Wide_SNP_6Gene Copy Number: TCGA COAD Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)
gene expressionUNCAgilentTCGA COAD UNC Gene Expression Agilent Top 5% Most Variable GenesLaunch viewer (w/annotations)
TCGA COAD UNC Gene Expression Agilent: Clustered By All GenesLaunch viewer (w/annotations)
TCGA COAD UNC Gene Expression Agilent: Clustered By Top 5% Most Variable GenesLaunch viewer (w/annotations)
Genome-based viewcopy numberBroadGenome_Wide_SNP_6Genome Copy Number: TCGA COAD Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)

TCGA GBM project:
Gene-based viewcopy numberBroadGenome_Wide_SNP_6Gene Copy Number: TCGA GBM Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)
gene expressionUNCAgilentTCGA GBM UNC Gene Expression Agilent Top 5% Most Variable GenesLaunch viewer (w/annotations)
TCGA GBM UNC Gene Expression Agilent: Clustered By All GenesLaunch viewer (w/annotations)
TCGA GBM UNC Gene Expression Agilent: Clustered By Top 5% Most Variable GenesLaunch viewer (w/annotations)
Genome-based viewcopy numberBroadGenome_Wide_SNP_6Genome Copy Number: TCGA GBM Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)

TCGA HNSC project:
Gene-based viewcopy numberBroadGenome_Wide_SNP_6Gene Copy Number: TCGA HNSC Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)
Genome-based viewGenome Copy Number: TCGA HNSC Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)

TCGA KIRC project:
Gene-based viewcopy numberBroadGenome_Wide_SNP_6Gene Copy Number: TCGA KIRC Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)
gene expressionUNCAgilentTCGA KIRC UNC Gene Expression Agilent Top 5% Most Variable GenesLaunch viewer (w/annotations)
TCGA KIRC UNC Gene Expression Agilent: Clustered By All GenesLaunch viewer (w/annotations)
TCGA KIRC UNC Gene Expression Agilent: Clustered By Top 5% Most Variable GenesLaunch viewer (w/annotations)
Genome-based viewcopy numberBroadGenome_Wide_SNP_6Genome Copy Number: TCGA KIRC Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)

TCGA KIRP project:
Gene-based viewcopy numberBroadGenome_Wide_SNP_6Gene Copy Number: TCGA KIRP Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)
gene expressionUNCAgilentTCGA KIRP UNC Gene Expression Agilent Top 5% Most Variable GenesLaunch viewer (w/annotations)
TCGA KIRP UNC Gene Expression Agilent: Clustered By All GenesLaunch viewer (w/annotations)
TCGA KIRP UNC Gene Expression Agilent: Clustered By Top 5% Most Variable GenesLaunch viewer (w/annotations)
Genome-based viewcopy numberBroadGenome_Wide_SNP_6Genome Copy Number: TCGA KIRP Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)

TCGA LGG project:
Gene-based viewcopy numberBroadGenome_Wide_SNP_6Gene Copy Number: TCGA LGG Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)
gene expressionUNCAgilentTCGA LGG UNC Gene Expression Agilent Top 5% Most Variable GenesLaunch viewer (w/annotations)
TCGA LGG UNC Gene Expression Agilent: Clustered By All GenesLaunch viewer (w/annotations)
TCGA LGG UNC Gene Expression Agilent: Clustered By Top 5% Most Variable GenesLaunch viewer (w/annotations)
Genome-based viewcopy numberBroadGenome_Wide_SNP_6Genome Copy Number: TCGA LGG Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)

TCGA LIHC project:
Gene-based viewcopy numberBroadGenome_Wide_SNP_6Gene Copy Number: TCGA LIHC Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)
Genome-based viewGenome Copy Number: TCGA LIHC Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)

TCGA LUAD project:
Gene-based viewcopy numberBroadGenome_Wide_SNP_6Gene Copy Number: TCGA LUAD Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)
gene expressionUNCAgilentTCGA LUAD UNC Gene Expression Agilent Top 5% Most Variable GenesLaunch viewer (w/annotations)
TCGA LUAD UNC Gene Expression Agilent: Clustered By All GenesLaunch viewer (w/annotations)
TCGA LUAD UNC Gene Expression Agilent: Clustered By Top 5% Most Variable GenesLaunch viewer (w/annotations)
Genome-based viewcopy numberBroadGenome_Wide_SNP_6Genome Copy Number: TCGA LUAD Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)

TCGA LUSC project:
Gene-based viewcopy numberBroadGenome_Wide_SNP_6Gene Copy Number: TCGA LUSC Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)
gene expressionUNCAgilentTCGA LUSC UNC Gene Expression Agilent Top 5% Most Variable GenesLaunch viewer (w/annotations)
TCGA LUSC UNC Gene Expression Agilent: Clustered By All GenesLaunch viewer (w/annotations)
TCGA LUSC UNC Gene Expression Agilent: Clustered By Top 5% Most Variable GenesLaunch viewer (w/annotations)
Genome-based viewcopy numberBroadGenome_Wide_SNP_6Genome Copy Number: TCGA LUSC Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)

TCGA OV project:
Gene-based viewcopy numberBroadGenome_Wide_SNP_6Gene Copy Number: TCGA OV Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)
gene expressionUNCAgilentTCGA OV UNC Gene Expression Agilent Top 5% Most Variable GenesLaunch viewer (w/annotations)
TCGA OV UNC Gene Expression Agilent: Clustered By All GenesLaunch viewer (w/annotations)
TCGA OV UNC Gene Expression Agilent: Clustered By Top 5% Most Variable GenesLaunch viewer (w/annotations)
Genome-based viewcopy numberBroadGenome_Wide_SNP_6Genome Copy Number: TCGA OV Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)

TCGA PAAD project:
Gene-based viewcopy numberBroadGenome_Wide_SNP_6Gene Copy Number: TCGA PAAD Broad Genome Wide SNP 6 Level3Launch viewer
Genome-based viewGenome Copy Number: TCGA PAAD Broad Genome Wide SNP 6 Level3Launch viewer

TCGA PRAD project:
Gene-based viewcopy numberBroadGenome_Wide_SNP_6Gene Copy Number: TCGA PRAD Broad Genome Wide SNP 6 Level3Launch viewer
Genome-based viewGenome Copy Number: TCGA PRAD Broad Genome Wide SNP 6 Level3Launch viewer

TCGA READ project:
Gene-based viewcopy numberBroadGenome_Wide_SNP_6Gene Copy Number: TCGA READ Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)
gene expressionUNCAgilentTCGA READ UNC Gene Expression Agilent Top 5% Most Variable GenesLaunch viewer (w/annotations)
TCGA READ UNC Gene Expression Agilent: Clustered By All GenesLaunch viewer (w/annotations)
TCGA READ UNC Gene Expression Agilent: Clustered By Top 5% Most Variable GenesLaunch viewer (w/annotations)
Genome-based viewcopy numberBroadGenome_Wide_SNP_6Genome Copy Number: TCGA READ Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)

TCGA STAD project:
Gene-based viewcopy numberBroadGenome_Wide_SNP_6Gene Copy Number: TCGA STAD Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)
Genome-based viewGenome Copy Number: TCGA STAD Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)

TCGA THCA project:
Gene-based viewcopy numberBroadGenome_Wide_SNP_6Gene Copy Number: TCGA THCA Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)
Genome-based viewGenome Copy Number: TCGA THCA Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)

TCGA UCEC project:
Gene-based viewcopy numberBroadGenome_Wide_SNP_6Gene Copy Number: TCGA UCEC Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)
gene expressionUNCAgilentTCGA UCEC UNC Gene Expression Agilent Top 5% Most Variable GenesLaunch viewer (w/annotations)
TCGA UCEC UNC Gene Expression Agilent: Clustered By All GenesLaunch viewer (w/annotations)
TCGA UCEC UNC Gene Expression Agilent: Clustered By Top 5% Most Variable GenesLaunch viewer (w/annotations)
Genome-based viewcopy numberBroadGenome_Wide_SNP_6Genome Copy Number: TCGA UCEC Broad Genome Wide SNP 6 Level3Launch viewer (w/annotations)

TSP Lung project:
Gene-based viewcopy numberBroadAffymetrixGene Copy Number: TSP Lung AffymetrixLaunch viewer
Genome-based viewGenome Copy Number: TSP Lung AffymetrixLaunch viewer

Originally engineered by Michael Edmonson, currently at St. Judes
Questions, comments, and suggestions to: Richard Finney (finneyr@mail.nih.gov) NCI
Last modified: Tue Dec 11 13:21:41 2012