TARGET Data Matrix

Version 3.3 (November 2012) Version History
Disease Patient
Data
Gene
Expression
Copy
Number
Epigenetics miRNA Sequence
Acute
Lympho-
blastic
Leukemia
(ALL)
Phase I
Clinical
File


Case
Matrix
Affymetrix
U133 Plus 2
L1
L2



L3
L4
Affymetrix
SNP 500K

L1
L2



L3
L4














Whole
Genome
L1
L2

L3
L4
Whole
Genome Lite
L1
L2

L3
L4
RNA-Seq

L1
L2



L3
L4
Targeted Re-
sequencing

Kinome

Acute
Lympho-
blastic
Leukemia
(ALL)
Phase II
Clinical
File


Case
Matrix
Affymetrix
U133 Plus 2
L1
L2


L3
L4
Affymetrix
SNP 6.0
L1
L2


L3
L4
HELP
Methylation
L1
L2


L3
L4






Whole
Genome
L1
L2


L3
L4
Exome

L1
L2


L3
L4
RNA-Seq

L1
L2


L3
L4
Acute
Myeloid
Leukemia
(AML)
Clinical
File


Case
Matrix
Affymetrix
Gene ST
L1
L2


L3
L4
Affymetrix
SNP 6.0
L1
L2


L3
L4
Illumina
Infinium 27K
L1
L2


L3
L4
miRNA-
Seq

L1
L2


L3
L4
Whole
Genome
L1
L2


L3
L4
Exome

L1
L2


L3
L4
RNA-Seq

L1
L2


L3
L4
High-Risk
Wilms
Tumor
Clinical
File


Case
Matrix
Affymetrix
U133 Plus 2
L1
L2


L3
L4
Affymetrix
SNP 6.0
L1
L2


L3
L4
Illumina
Infinium 27K
L1
L2


L3
L4






Whole
Genome
L1
L2


L3
L4
Exome

L1
L2


L3
L4
RNA-Seq

L1
L2


L3
L4
Neuro-
blastoma
(NBL)
Phase I*
Phase II†
Clinical
File


Case
Matrix
Affymetrix
HumanExon
1.0 ST v2*
L1
L2








L3
L4
Illumina
550K SNP*


L1
L2








L3
L4
Illumina
Infinium
27K†

L1
L2








L3
L4













Whole
Genome*


L1
L2


L3
L4
Whole
Genome†
L1
L2

L3
L4
Exome*


L1
L2








L3
L4
Targeted Re-
sequencing*


RNA-Seq*

L1
L2

L3
L4
Osteo-
sarcoma
(OS)
Clinical
File


Case
Matrix
Affymetrix
HumanExon
1.0 ST
L1
L2


L3
L4
Affymetrix
SNP 6.0


L1
L2


L3
L4
Illumina
Infinium
450K

L1
L2


L3
L4
MegaPlex
TaqMan






Whole
Genome


L1
L2


L3
L4
Exome


L1
L2


L3
L4
RNA-Seq


L1
L2


L3
L4
TARGET Data Legend
Blue: Public
Red: Protected
Black: Unavailable
‡: All L1 sequencing links currently point to all TARGET sequences at SRA

For NBL Only
Purple*: Phase I Data
Orange†: Phase II Data
Level 1 (L1) = Raw/Trace Data
Level 2 (L2) = Processed/Normalized Data
Level 3 (L3) = Aggregated Data
Level 4 (L4) = Cumulative Data