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SOFTWARE ABSTRACT
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PACKAGE ID | 002712WKSTN00 PHYTOZONE V.7.0 |
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KWIC Title | Phytozome System for Comparative Plant Genomics |
AUTHORS | D. M. Goodstein, R. D. Hayes, S. Shu, Ul Hellsten, J. B. Fazo, D. S. Rokhsar, R. Howson, W. Dirks, R. Neupane |
LIMITATION/AUDIENCE CODE | COPY/UNL |
COMPLETION DATE | 09/27/2011 |
PUBLICATION DATE | 09/27/2011 |
DESCRIPTION | Phytozome is a joint project of the Department of Energy's Joint Genome Institute and the UC Berkeley Center for Integrative Genomics to facilitate comparative genomic studies amongst green plants. Families of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. As of release 7.0, Phytozome provides access to twenty-five sequenced and annotated green plant genomes which have been clustered into gene families at eleven evolutionarily significant nodes., Where possible, each gene has been annotated with PFAM, KOG, KEGG, and PANTHER assignments, and publicly available annotations from RefSeq, UniProt, TAIR, JGI are lyper-linked and searchable. |
PACKAGE CONTENTS | Media Directory; Software Abstract; Media includes Source Code; |
SOURCE CODE INCLUDED? | Y |
MEDIA QUANTITY | 1 |
COMPUTER | WORKSTATION |
OPERATING SYSTEMS | Unix/Linux system |
PROGRAMMING LANGUAGES | Java, Perl, Python, Groovy, php, mySQL, shell script |
ABSTRACT STATUS | Released As-Is 12/13/2011 |
SPONSOR | USDOE |
RESEARCH ORG | Lawrence Livermore National Laboratory |
PACKAGE TYPE | AS-IS |
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