Krause, M., Love, D.C., Ghosh, S.K., Wang, P., Bentley, D.L., Fukushige, T., and Hanover, J.A. (2011) Nutrient-driven O-GlcNAcylation at promoters impacts genome-wide RNA Pol II distribution and dynamics. (Submitted)
Fukushige, T. and Krause, M. (2011) Myogenic conversion and transcriptional profiling of embryonic blastomeres in C. elegans. Methods (Invited Review – submitted).
Kouns, N.A., Nakielna, J., Behensky, F., Krause, M.W., Kostrouch, Z, and Kostrouchova, M. (2011) NHR-23 dependent collagen and Hedghog-related genes required for molting. BBRC (Accepted).
Krause, M. and Liu, J.K. (2011) Somatic muscle specification during embryonic and post-embryonic development in the nematode C. elegans. WIREs Developmental Biology (accepted).
Mondoux, M.A., Love, D.C., Ghosh, S.K., Fukushige, T., Bond, M., Weerasinghe, G.R., Hanover, J.A., and Krause, M.W. (2011) O-GlcNAc cycling and insulin signaling are required for the glucose stress response in C. elegans. Genetics , 188: 369-382.
Lei, H., Fukushige, T., Niu, W., Sarov, M., Reinke, V. and Krause, M. (2010). A widespread distribution of geomic CeMyoD binding sites revealed and cross validated by ChIP-chip and ChIP-seq techniques. PLoS ONE 5(12):e15898.
Love, D. C., Krause, M.W., and Hanover, J.A. (2010). O-GlcNAc cycling: Emerging roles in development and epigenetics. Seminars in Cell & Developmental Biology , 21, 646-654.
Vohanka, J., Simeckova, K., Machalova, E., Behensky, F., Krause, M.W., Kostrouch, Z., and Kostrouchova, M. (2010). Diversification of fasting regulated transcription in a cluster of duplicated nuclear hormone receptors in C. elegans. Gene Expression Patterns , 10, 227-236.
Severance, S., Rajagopal, A., Rao, A.U., Cerqueira, G.C., Mitreva, M., El-Sayed, N.M., Krause, M. and Hamza, I. (2010) Genome-wide analysis reveals novel genes essential for heme homeostasis in Caenorhabditis elegans. PLoS Genetics , 6, e1001044.
Dona C. Love, Salil Ghosh, Michelle A. Mondoux, Tetsunari Fukushige, Peng Wang, Mark C. Wilson, Wendy B. Iser, Catherine A. Wolkow, Michael W. Krause and John A. Hanover. (2010) Dynamic O-GlcNAc cycling at promoters of C. elegans genes regulating longevity, stress and immunity. Proc. Natl. Acad. Sci. U.S.A ., 107, 7413-7418.
Hanover, J.A., Krause, M. W., and Love, D. C., (2010) The Hexosamine Signaling Pathway: O-GlcNAc cycling in feast or famine. Biochemica et Biophhysica Acta ,1800, 80-95.
Hanover, J.A., Krause, M. W., and Love, D. C., (2009) The Hexosamine Signaling Pathway: O-GlcNAc cycling in feast or famine. Biochemica et Biophhysica Acta - General Subjects (in press).
Michelle A. Mondoux, Michael W. Krause, and John A. Hanover. (2009) Insulin Signaling is Only the Beginning: C. elegans Genetic Networks Predict Roles for O-GlcNAc Regulation in Key Signaling Pathways. CSTT (in press)
Lei, H., Liu, J., Fukushige, T., Fire, A., and Krause, M. (2009) Caudal-like PAL-1 directly activates the bodywall muscle module regulator hlh-1 in C. elegans to initiate the embryonic muscle gene regulatory network. Development , 136, 1241-1249.
McGhee, J.D., Fukushige, T., Krause, M.W., Minnema, S.E., Goszczynski, B., Kohara, Y., Gaudet, J., Bossinger, O., Jones, S.J.M., Zhao, Y., Hirst, M., Ruzanov, P., Marra, M.A., Zapf, R., Moerman, D.G., and Kalb, J.M. (2009) ELT-2 is the predominant transcription factor controlling differentiation and function of the C. elegans intestine, from embryo to adult. Dev Biol , 327, 551-565.
Cai, T., Hirai, H., Fukushige, T., Yu, P., Zhang, G., Notkins, A.L, and Krause, M. (2009). Loss of the transcriptional repressor PAG-3/Gfi-1 results in enhanced neurosecretion that is dependent on the dense-core vesicle membrane protein IDA-1/IA-2. PLOS Genetics , 5: e1000447
Rajagopal, A., Rao, A.U., Amigo, J., Tian, M., Upadhyay, S.K., Hall, Cl, Uhm, S., Mathew, M.K., Fleming, M.D., Paw, B.H., Krause, M., Hamza, I. (2008) Haem homeostasis is regulated by the conserved and concerted functions of HRG-1 proteins. Nature , 453, 1127-1131.
Pohludka, M., Simeckova, K., Vohanka, J., Yilma, P., Novak, P., Krause, M.W., Kostrouchova, M. and Kostrouch, Z. (2008) Proteomic analysis uncovers a metabolic phenotype in C. elegans after nhr-40 reduction of function. BBRC , 12, 49-54.
Fox, R.M., Watson, J.D., Von Stentia, S.E., McDermott, J., Brodigan, T.M., Fukushige, T., Krause, M., and Miller, D.M. III (2007). The embryonic muscle transcriptome of C. elegans. Genome Biology, 8, r188.
Simeckova, K., Brozona, E., Vohanka, J., Pohludka, M., Kostrouch, Z., Krause, M., Rall, J.E., and Kostrouchova, M. (2007). Supplementary nuclear receptor NHR-60 is required for normal embryonic and early larval development of Caenorhabditis elegans. Folia Biologica 53, 85-96.
Fukushige, T., Brodigan, T.M., Schriefer, L., Waterston, R.H., and Krause, M. (2006) Defining the transcriptional redundancy of early bodywall muscle development in C. elegans: Evidence for a unified theory of animal muscle development. Genes & Development 20, 3395-3406.
Michele Forsythe, Dona C. Love, Brooke D. Lazarus, Eun Ju Kim, William A. Prinz, Gilbert Ashwell, Michael W. Krause and John A. Hanover. (2006) C. elegans ortholog of a diabetes susceptibility locus: oga-1 (O-GlcNAcase) knockout impacts O-GlcNAc cycling, metabolism and dauer formation. Proc. Natl. Acad. Sci . U.S.A. 103, 11952-7.
Okkema, P.G. and Krause, M. (2005) Transcriptional regulation, WormBook , ed. The C. elegans Research Community, WormBook, doi/10.1895/wormbook.1.45.1, http://www.wormbook.org., 1-41.
Fukushige, T. and Krause, M. (2005). The myogenic potency of HLH-1 reveals wide-spread developmental plasticity in early C. elegans embryos. Development 132, 1795-1805.
Hanover, J.A., Forsythe, M.E. Hennessey, P., Brodigan, T.M., Love, D.C., Ashwell, G. and Krause, M. (2005). A Caenorhabditis elegans model of insulin resistance: Altered macronutrient storage and dauer formation in an OGT-1 knockout. Proc. Natl. Acad. Sci. U.S.A 102, 11266-11271.
Cai, T., Fukushige, T., Notkins, A.L., and Krause, M. (2004). Insulinoma-Associated Protein IA-2, a vesicle transmembrane protein, genetically interacts with UNC-31/CAPS and affects neurosecretion in Caenorhabditis elegans. J. Neuroscience 24, 3115-3124.
Brodigan, T.M., Liu, J., Park, M., Kipreos, E.T., and Krause, M. (2003). Cyclin E expression during development in C. elegans. Dev. Biol. 254, 102-115.
Tonkin, L.A., Saccomanno, L., Morse, D.P., Brodigan, T., Krause, M., and Bass, B.L. (2002). RNA editing by ADARs is important for normal behavior in Caenorhabditis elegans. EMBO J . 21, 6025-6035.
Arudchandran, A., Cerritelli, S.M., Krause, M.W., and Crouch, R.J. (2002). Multiple ribonuclease H-encoding genes in the Caenorhabditis elegans genome contrasts with the two typical ribonuclease H-encoding genes in the human genome. Mol. Biol. & Evol. 19, 1910-1919.
Corsi, A. K., Brodigan, T., Jorgensen, E., and Krause, M. (2002). A dominant negative mutant of C. elegans Twist with implications for Saethre-Chotzen syndrome. Development 129, 2761-2772.
Berke, J.D., Sgambato, V., Zhu, P.-P., Lavoie, B., Vincent, M., Krause, and M., Hyman, S.E. (2001). Dopamine and glutamate induce distinct striatal splice forms of Ania-6, an RNA polymerase II-associated cyclin. Neuron 32, 277-287.
Kostrouchova, M., Krause, M., Kostrouch, Z., and Rall, J.E. (2001). Nuclear hormone receptor CHR3 is a critical regulator of all four larval molts of the nematode Caenorhabditis elegans. Proc. Natl. Acad. Sci. U.S.A. 98, 7360-7365.
Cai, T., Krause, M., Odenwald, W.F., Toyama, R., and Notkins, A.L. (2000). The IA-2 gene family: Homologs in C. elegans, Drosophila and zebrafish. Diabetologia 44, 81-88.
Zheng, R., Ghirlando, R., Lee, M.S., Wei, S.-Q., Mizuuchi, K., Krause, M., and Craigie, R. (2000). BAF bridges DNA in a discrete higher order nucleoprotein complex: a possible role in chromosome organization. Proc. Natl. Acad. Sci. U.S.A. 97, 8997-9002.
Dichoso, D., Brodigan, T., Chwoe, K.Y., Lee, J.S., Llacer, R., Park, M., Corsi, A.K., Kostas, S.A., Fire, A., Ahnn, J., and Krause, M. (2000). The MADS box factor CeMef2 is not essential for C. elegans myogenesis and development. Developmental Biology 223, 431-40.
Corsi, A.K., Kostas, S.A., Fire, A., Krause, M. (2000) Caenorhabditis elegans Twist plays an essential role in non-striated muscle development. Development 127, 2041-51.
Fei, Y.-Y., Romero,M.F., Krause, M., Liu, J.-C., Huang, W., Ganpathy, V., and Leibach, F.H. (2000). A novel H -coupled oligopeptide transporter (OPT3) from Caenorhabditis elegans with a predominant function as a H -channel and exclusive expression in neurons. J. Biol. Chem. 275, 9563-71.
Park, M. and Krause, M. (1999). Regulation of postembryonic G1 cell cycle progression in C. elegans by a cyclin/cdk-like complex. Development 126, 4849-4860.
Gladyshev, V.N., Krause, M., Xu, X.M., Korotkov, K.V.. Kryukov, G.V., Sun, Q.A., Lee, B.J., Wooton, J.C., and Hatfield, D.L. (1999). Selenocysteine-containing thioredoxin reductase in C. elegans. Biochem. & Biophys. Res. Com. 259, 244-249.
Zhang, J.-M., Chen, L., Krause, M., Fire, A., and Paterson, B.M. (1999). Evolutionary conservation of MyoD function and differential utilization of E proteins. Dev. Biol. 208, 465-472.
Krause, M. (1999). Cell Fate Determination In C. elegans. In: Development - Genetics, Epigenetics and Environmental Regulation., Enzo Russo, David Cove, Lois Edgar, Rudolf Jaenisch, and Francesco Salamini eds., Springer-Verlag, Heidelberg, 251-267.
Harfe, B.D., Vaz Gomes, A., Kenyon, C., Krause, M., and Fire, A. (1998). Analysis of a Caenorhabditis elegans Twist homolog identifies conserved and divergent aspects of mesodermal patterning. Genes & Dev. 12, 2623-2635.
Harfe, B.D., Branda,C.S., Krause, M., Stern, M.J., and Fire, A. (1998). MyoD and the specification of muscle and non-muscle fates in postembryonic development of the C. elegans mesoderm. Development 125, 2479-2488.
Kostrouchova, M., Krause, M., Kostrouch, Z., and Rall, J.E. (1998). CHR3: a Caenorhabditis elegans orphan nuclear hormone receptor required for proper epidermal development and molting. Development 125, 1617-1626.
Krause, M., Park, M., Zhang, J.-M., Yuan, J., Harfe, B., Xu, S.-Q., Greenwald, I., Cole, M., Paterson, B., and Fire, A. (1997). A C. elegans E/Daughterless bHLH protein marks neuronal but not striated muscle development. Development 124, 2179-2189.
W.A. Lubas, Frank, D.W., Krause, M., and Hanover, J.A. (1997). O-linked GlcNAc transferase is a conserved nucleocytoplasmic protein containing tetratricopeptide repeats. J. Biol. Chem., 272, 9316-9324.
Krause, M. and McGhee, J. (1996). Transcription factors and transcriptional regulation. In: The Nematode C. elegans. ed Don Riddle, Jim Priess, and Tom Blumenthal, Cold Spring Harbor Press (Cold Spring Harbor, NY).
Krause, M.W. (1995). Techniques for analyzing transcription and translation. In: Caenorhabditis elegans: Modern biological analysis of an organism, eds Henry F.Epstein, Diane C.Shakes, Academic Press (San Diego) 513-529.
Krause, M.W. (1995). Regulation of transcription and translation. In: Caenorhabditis elegans: Modern biological analysis of an organism, eds Henry F.Epstein, Diane C.Shakes, Academic Press (San Diego) 483-512.
Krause, M.W. (1995). MyoD and myogenesis in C. elegans. BioEssays 17, 219-228.
Krause, M.W., Harrison, S.W., Xu, S.-Q., Chen, L., and Fire, A. (1994). Elements regulating cell- and stage-specific expression of the C. elegans MyoD family homolog hlh-1. Dev. Biol. 166, 133-148.
Chen, L., Krause, M.W., Sepanski, M., and Fire, A. (1994). The C. elegans MyoD homologue HLH-1 is essential for proper muscle function and complete morphogenesis. Development 120, 1631-1641.
Krause, M.W. and Weintraub, H. (1992). CeMyoD expression and myogenesis in C. elegans. Sem. Dev. Biol. 3, 277-285.
Krause, M.W., Fire, A., Harrison, S.W., Weintraub, H., and Tapscott, S. (1992). Functional conservation of nematode and vertebrate myogenic regulatory factors. J. Cell Sci. , Supp. 16, 111-115.
Mello, C.C., Draper, B.W., Krause, M.W., Weintraub, H., and Priess, J.R. (1992). The pie-1 and mex-1 genes and maternal control of blastomere identity in early C. elegans embryos. Cell 70, 163-176.
Chen, L., Krause, M.W., Draper, B., Weintraub, H., and Fire, A. (1992). Body-wall muscle formation in Caenorhabditis elegans embryos that lack the MyoD homolog hlh-1. Science 256, 240-243.
Weintraub, H., Davis, R., Tapscott, S., Thayer, M., Krause, M., Benezra, R., Blackwell, T.K., Turner, D., Rupp, R., Hollenberg, S., Zhuang, Y., and Lassar, A. (1991). The myoD gene family: Nodal point during specification of the muscle cell lineage. Science 251, 761-766.
Krause, M.W., Fire, A., Harrison, S.W., Priess, J., and Weintraub, H. (1990). CeMyoD accumulation defines the bodywall muscle cell fate during C. elegans embryogenesis. Cell 63, 907-922.
Krause, M.W., Wild, M., Rosenzweig, B.R., and Hirsh, D. (1989). Wild type and mutant actin gene structure in C. elegans. J. Mol. Biol. 208, 381-392.
Dibb, N.J., Maruyama, I., Krause, M.W., and Karn, J. (1989). Sequence analysis of the complete Caenorhabditis elegans myosin heavy chain gene family. J. Mol. Biol. 205, 603-613.
Krause, M.W. and Hirsh, D. (1987). A trans-spliced leader sequence on actin mRNA in C. elegans. Cell 49, 753-761.
Krause, M.W. and Hirsh, D. (1986). Actin gene transcription during Caenorhabditis elegans development. In: Cellular and Molecular Biology of the Cytoskeleton, ed. Shay, J.W., Plenum Publishing Corporation (New York).
Krause, M.W. and Hirsh, D. (1984). Actin gene expression in Caenorhabditis elegans. In: Molecular Biology of the Cytoskeleton, eds Murphy, D., Cleveland, D., and Borisy, G., Cold Spring Harbor Press (Cold Spring Harbor, NY).
Landel, C.P., Krause, M.W., Waterston, R., and Hirsh, D. (1984). DNA rearrangements of the actin gene cluster in C. elegans accompany reversion of three muscle mutants. J. Mol. Biol. 180, 497-513.