We face a series of critical problems related to the production and consumption of energy, as well as to the environmental consequences of those processes. For these problems, microbial processes are important elements of solutions such as sustainable bioenergy and bioprocessing, assessment of climate change impact and adaptation, and cost-effective cleanup technologies.
The Challenge
Microorganisms in natural or engineered ecosystems rarely live alone, but instead function as integrated units—or communities—that process energy and materials and thereby affect their environment. Despite their importance, we know little about microbial community function and behavior. As a result, we have little ability to predict changes in microbial community dynamics during either natural cycles of change or environmental perturbations—such as climate change or inputs of toxic pollutants.
Focus of the Microbial Communities Initiative
The Microbial Communities Initiative is a 5-year investment by Pacific Northwest National Laboratory that integrates biological/ecological experimentation, analytical chemistry, and simulation modeling. The objective is to create transforming technologies, elucidate mechanistic forces, and develop theoretical frameworks for the analysis and predictive understanding of microbial communities.
The focus of the MCI is on understanding microbial community interactions at the fundamental scale at which they occur—at the microscale (<100 microns). This focus requires significant technology development and its specific application to community-level ecological questions.
Approach: Seeing the World That Microbes See
In particular, the MCI will develop novel technologies that address fundamental questions in the field of microbial community ecology:
- "seeing the world that microbes see," that is, material and energy flux rates at a spatial scale of microns
- applying genomic/proteomic technologies to questions in microbial community ecology
- individually based simulation modeling informed by experimental observations.
Within the Microbial Communities Initiative, experiments at the micrcosm—or representative system—level will provide valuable data for developing models and technologies that will further understanding of microbial communities at the microscale.
