Welcome to plantgdb.org!Tools and resources for plant genomics.
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Public Plant Sequence Release 183 is current.
![Tiarella](https://webarchive.library.unt.edu/web/20110722222556im_/http://www.plantgdb.org/images/Tiarella.png)
Sequence Assemblies
![EST Assembly](https://webarchive.library.unt.edu/web/20110722222556im_/http://www.plantgdb.org/images/ESTAssembly.png)
Tools
![BLAST](https://webarchive.library.unt.edu/web/20110722222556im_/http://www.plantgdb.org/images/BLAST.png)
More about Tools...
Tool | Description |
---|---|
BioExtract Server | An online service for creating and customizing bioinformatics workflows |
BLAST | An NCBI-BLAST service with , species-parsed plant databases and batch query capabilities |
DAS | Distributed Annotation System (DAS) allows remote genome browsers to access PlantGDB annotations |
FindPrimers | A tool for designing PCR primers for analyzing maize Ds transposon insertions. |
GeneSeqer Parallel GeneSeqer | A tool for generating gene models based on transcript - genome spliced alignment |
GenomeThreader | A tool for generating gene models based on transcript or protein:genome spliced alignment |
MuSeqBox | A program that tabulates BLAST output and filter hits according to user-specified criteria |
PatternSearch | A tool for querying short sequences (e.g. PCR fragments) for genome homology |
ProbeMatch | Query your sequence against microarray probe sequences |
TableMaker | Search PlantGDB's Plant Sequence database with an easy-to use GUI interface. |
yrGATE | A tool for community annotation of genomic sequence, used in conjunction with the xGDB genome browsers |
Workflow Management
![BioExtract Server](https://webarchive.library.unt.edu/web/20110722222556im_/http://www.plantgdb.org/images/BioExtract.png)
Genome Browsers
![AtGDB](https://webarchive.library.unt.edu/web/20110722222556im_/http://www.plantgdb.org/images/AtGDB.png)
Video Tutorial (6 min): View Quicktime; View Flash
Community Annotation
![yrGATE](https://webarchive.library.unt.edu/web/20110722222556im_/http://www.plantgdb.org/images/yrGATE.png)
Video Tutorial (5 min): View Quicktime; View Flash
Outreach
![PGROP](https://webarchive.library.unt.edu/web/20110722222556im_/http://www.plantgdb.org/images/PGROP.png)