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WormBase Release WS225
BLAST/BLAT SEARCH
1) Enter Your Query Sequence:
Query Type:
Nucleotide
Protein
2) Select an application (BLAST or BLAT) and parameters:
BLAST
blastn (nucleotide query vs. nucleotide database)
blastp (protein query vs. protein database)
blastx (nucleotide query vs. protein database)
tblastn (protein query vs. nucleotide database)
E-value Threshold:
1E-32
1E-16
1E-8
1E-4
1E-2
1E+0
1E+1
1E+2
1E+4
Filter
BLAT
3) Select a database:
C. elegans (WS225) genome [BLAST]
C. elegans (WS225) proteins [BLAST]
C. elegans (WS225) genomic clones [BLAST]
C. elegans (WS225) ESTs [BLAST]
C. elegans (WS225) genome [BLAT]
B. malayi (WS225) proteins [BLAST]
B. malayi (WS225) genome [BLAST]
C. brenneri (WS225) genome [BLAST]
C. brenneri (WS225) proteins [BLAST]
C. briggsae (WS225) genome [BLAST]
C. briggsae (WS225) proteins [BLAST]
C. briggsae (WS225) genes [BLAST]
C. briggsae (WS225) genome [BLAT]
C. japonica genome [BLAST]
C. japonica (WS225) proteins [BLAST]
C. remanei (WS225) genome [BLAST]
C. remanei (WS225) proteins [BLAST]
M. hapla (WS225) genome [BLAST]
M. incognita (WS225) genome [BLAST]
P. pacificus (WS225) genome [BLAST]
P. pacificus (WS225) proteins [BLAST]
H. contortus (WS225) genome [BLAST]
C. angaria (WS225) genome [BLAST]
C. angaria (WS225) proteins [BLAST]
C. elegans (WS190; 6/2008) genome [BLAST]
C. elegans (WS190; 6/2008) proteins [BLAST]
C. elegans (WS180; 9/2007) genome [BLAST]
C. elegans (WS180; 9/2007) proteins [BLAST]
C. elegans (WS170; 2/2007) genome [BLAST]
C. elegans (WS170; 2/2007) proteins [BLAST]
C. elegans (WS160; 7/2006) genome [BLAST]
C. elegans (WS160; 7/2006) proteins [BLAST]
C. elegans (WS150; 11/2005) genome [BLAST]
C. elegans (WS150; 11/2005) proteins [BLAST]
C. elegans (WS140; 3/2005) genome [BLAST]
C. elegans (WS140; 3/2005) proteins [BLAST]
C. elegans (WS130; 8/2004) genome [BLAST]
C. elegans (WS130; 8/2004) proteins [BLAST]
C. elegans (WS120; 3/2004) genome [BLAST]
C. elegans (WS120; 3/2004) proteins [BLAST]
C. elegans (WS110; 10/2003) genome [BLAST]
C. elegans (WS110; 10/2003) proteins [BLAST]
C. elegans (WS100; 5/2003) genome [BLAST]
C. elegans (WS100; 5/2003) proteins [BLAST]
Documentation
About the BLAT algorithm
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