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GrailEXP
Grail Experimental Gene Discovery Suite

 
 
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References

It was hoped that there would be a new GrailEXP publication (describing the new algorithm for version 3.0) some time within 2000/2001. Staffing changes have cancelled these plans. Below are the ealier references.

  • GrailEXP v2.0 References
    • Improved Analysis and Annotation Tools for Whole-Genome Computational Annotation and Analysis: GRAIL-EXP Genome Analysis Toolkit and Related Analysis Tools, D. Hyatt, J. Snoddy, D. Schmoyer, G. Chen, K. Fischer, M. Parang, I. Vokler, S. Petrov, P. Locascio, V. Olman, Miriam Land, M. Shah, and E. Uberbacher, Genome Sequencing & Biology Meeting, May 2000
    • GRAIL-EXP and the Genome Analysis Toolkit, D. Hyatt, J. Snoddy, D. Schmoyer, G. Chen, K. Fischer, M. Parang, I. Vokler, S. Petrov, P. Locascio, V. Olman, Miriam Land, M. Shah, and E. Uberbacher, The 13th Annual Cold Spring Harbor Meeting on Genome Sequencing & Biology, May 2000
    • GRAIL-EXP: Multiple Gene Modeling Using Pattern Recognition and Homology, Ying Xu, Manesh Shah, Doug Hyatt, Richard Mural, and Edward C. Uberbacher, The Seventh Department of Energy Contractor and Grantee Workshop, January 1999
  • GrailEXP v1.0 References
    • Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence Tags, Ying Xu, Richard J. Mural and Edward C. Uberbacher, Fifth International Conference on Intelligent Systems for Molecular Biology, pp. 344-353, AAAI Press, June 1997
    • Automated Gene Identification in Large-Scale Genomic Sequences, Ying Xu and Edward C. Uberbacher, Journal of Computational Biology, Volume 4, Number 3, 1997
    • Computational Gene Identification Using Neural Networks and Similarity Search, Ying Xu and Edward C. Uberbacher, Machine Learning and Sequence Pattern Analysis in Computational Biology, Eds. Steven Salzberg, David Searls, and Simon Kasifi, Elsevier Publishing Company, 1997
    • Gene Prediction by Pattern Recognition and Homology Search, Ying Xu and Edward C. Uberbacher, Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, AAAI Press, pp. 241-251, June 1996
  • Grail 1.3 and GenQuest References
    • Numerous publications, check here to see a listing of pre-1998 publications from the Computational Biosciences section.

 


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