Genomes to Life Contractor-Grantee Workshop I
Arlington, Virginia, February
9-12, 2003
Contents
Genomes to Life: Realizing the Potential of the Genome Revolution
- Harvard Medical School
- Lawrence Berkeley National Laboratory
- Oak Ridge National Laboratory
- A6 Bioinformatics and Computing in the Genomes to Life Center for Molecular and Cellular Systems
- A8 Mass Spectrometry in the Genomes to Life Center for Molecular and Cellular Systems
- A10 Genomes to Life Center for Molecular and Cellular Systems: A Research Program for Identification and Characterization of Protein Complexes
- A12 New Approaches for High-Throughput Identification and Characterization of Protein Complexes
- A14 Automation of Protein Complex Analyses in Rhodopseudomonas palustris and Shewanella oneidensis
- Sandia National Laboratories
- A16 Analysis of Protein Complexes from a Fundamental Understanding of Protein Binding Domains and Protein-Protein Interactions in Synechococcus WH8102
- A18 Carbon Sequestration in Synechococcus: Microarray Approaches
- A20 Carbon Sequestration in Synechococcus sp.: From Molecular Machines to Hierarchical Modeling
- A22 Systems Biology Models for Synechococcus sp.
- University of Massachusetts, Amherst
- A26 Hierarchical Organization of Modularity in Metabolic Networks
- A30 SimPheny: A Computational Infrastructure Bringing Genomes to Life
- A32 Parallel Scaling in Amber Molecular Dynamics Simulations
- A34 Microbial Cell Model of G. sulfurreducens: Integration of in Silico Models and Functional Genomic Studies
- A36 Towards a Self-Organizing and Self-Correcting Prokaryotic Taxonomy
- A38 Computational Framework for Microbial Cell Simulations
- A40 Characterization of Genetic Regulatory Circuitry Controlling Adaptive Metabolic Pathways
- A28 Computational Elucidation of Metabolic Pathways
- A42 Data Exchange and Programmatic Resource Sharing: The Systems Biology Workbench, BioSPICE and the Systems Biology Markup Language (SBML)
- A44 A Web-Based Laboratory Information Management System (LIMS) for Laboratory Microplate Data Generated by High-Throughput Genomic Applications
- A46 BioSketchpad: An Interactive Tool for Modeling Biomolecular and Cellular Networks
- A48 Molecular Docking with Adaptive Mesh Solutions to the Poisson-Boltzmann Equation
- A50 Functional Analysis and Discovery of Microbial Genes Transforming Metallic and Organic Pollutants: Database and Experimental Tools
- A52 Comparative Genomics Approaches to Elucidate Transcription Regulatory Networks
- A54 Predicting Genes from Prokaryotic Genomes: Are “Atypical” Genes Derived from Lateral Gene Transfer?
- A56 Advanced Molecular Simulations of E. coli Polymerase III
- A58 Karyote®: Automated Physico-Chemical Cell Model Development Through Information Theory
- A60 The Commercial Viability of EXCAVATOR™: A Software Tool For Gene Expression Data Clustering
- A62 Modeling Electron Transfer in Flavocytochrome c3 Fumarate Reductase
- B1 Identification and Isolation of Active, Non-Cultured Bacteria from Radionuclide and Metal Contaminated Environments for Genome Analysis
- B3 A Metagenomic Library of Bacterial DNA Isolated from the Delaware River
- B5 Approaches for Obtaining Genome Sequence from Contaminated Sediments Beneath a Leaking High-Level Radioactive Waste Tank
- B7 Ecological and Evolutionary Analyses of a Spatially and Geochemically Confined Acid Mine Drainage Ecosystem Enabled by Community Genomics
- B11 Strategies to Harness the Metabolic Diversity of Rhodopseudomonas palustris
- B13 Gene Expression Profiles in Nitrosomonas europaea, an Obligate Chemolithoautotroph
- B15 Genomics of Thermobifida fusca Plant Cell Wall Degradating Proteins
- B17 The Rhodopseudomonas palustris Microbial Cell Project
- B19 Lateral Gene Transfer and the History of Bacterial Genomes
- B21 Environmental Sensing, Metabolic Response, and Regulatory Networks in the Respiratory Versatile Bacterium Shewanella oneidensis MR-1
- A64 Progress in Development of Genetic Tools for Shewanella oneidensis MR-1
- B23 Integrated Analysis of Protein Complexes and Regulatory Networks Involved in Anaerobic Energy Metabolism of Shewanella oneidensis MR-1
- B25 Global Regulation in the Methanogenic Archaeon Methanococcus maripaludis
- B27 Identification of Regions of Lateral Gene Transfer Across the Thermotogales
- B29 The Dynamics of Cellular Stress Responses in Deinococcus radiodurans
- B9 Uncovering the Regulatory Networks Associated with Ionizing Radiation-Induced Gene Expression in D. radiodurans R1
- B31 Analysis of Proteins Encoded on the S. oneidensis MR-1 Chromosome, Their Metabolic Associations, and Paralogous Relationships
- B33 Finishing and Analysis of the Nostoc punctiforme Genome
- B35 In Search of Diversity: Understanding How Post-Genomic Diversity is Introduced to the Proteome
- B37 The Microbial Proteome Project: A Database of Microbial Protein Expression in the Context of Genome Analysis
- B39 Analysis of the Shewanella oneidensis Proteome in Cells Grown in Continuous Culture
- B41 The Molecular Basis for Metabolic and Energetic Diversity
- B43 Integrative Studies of Carbon Generation and Utilization in the Cyanobacterium Synechocystis sp. PCC 6803
- B45 Comparative Optical Mapping: A New Approach for Microbial Comparative Genomics
- B47 Optical Mapping of Multiple Microbial Genomes
- B49 Identification of ATP Binding Proteins within Sequenced Bacterial Genomes Utilizing Phage Display Technology
- B51 Development of Vectors for Detecting Protein-Protein Interactions in Bacteria
- B53 Development and Use of Microarray- Based Integrated Genomic Technologies for Functional Analysis of Environmentally Important Microorganisms
- B55 Electron Tomography of Whole Bacterial Cells
- B57 Single Cell Proteomics—D. radiodurans
- B59 Genomes to Proteomes to Life: Application of New Technologies for Comprehensive, Quantitative and High Throughput Microbial Proteomics
- B61 New Developments in Statistically Based Methods for Peptide Identification via Tandem Mass Spectrometry
