In the early 1940's, 13,363 acres of water in the Upper Chesapeake Bay were closed by Presidential Proclamations to the hunting of migratory waterfowl. These water areas were designated as the Susquehanna National Wildlife Refuge. At the time of its establishment, the water areas known as the Susquehanna flats were covered with wild celery, pond weeds, redhead grass and other desirable waterfowl foods. Peak waterfowl population numbers included over 500,000 canvasback and redhead ducks and over 200,000 American wigeon. These rich areas of aquatic growth began declining in the 1960's due to changes in the water quality and quantity.

Development above the Conowingo Dam caused more rapid drainage and greater water flow through the dam. Currents in the upper Chesapeake Bay deposited heavy loads of silt in the Susquehanna flats area. What remained of the suitable waterfowl vegetation was destroyed when Hurricane Agnes moved through in 1972. Today, only a few thousand geese may be found around the refuge during the winter months.

Because of the dramatic decrease in waterfowl numbers and vegetation in the area, the Presidential Proclamations were lifted on September 1, 1978 and the waters were returned to the State of Maryland. Battery Island remains a part of the National Wildlife Refuge System.