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Homeodomain Resource

DNA Binding Sites


   

All 107 records in the database are displayed below. To narrow down the number of entries displayed, use the search engine on the HDR Home Page.

Clicking on the HDR number in the Detail column will display the DNA binding site detail page for that particular homeodomain protein. Columns may be resorted by clicking on any of the column headers.


Detail Common Name DNA Binding Sequence Reference
HDRb1 ALX4 TAAT(C/T)G(G/A)ATTA J. Biol. Chem. 274: 32325-32, 1999
HDRb2 ARIX GTCAATTAG J. Biol. Chem. 272: 27382-92, 1997
HDRb94 ATH1 TGACAGGT Biol. Chem. 387: 31-40, 2006
HDRb3 ATHB6 CAATTATTA EMBO J. 21: 3029-38, 2002
HDRb96 ATML1 GCATTAAATGC Plant Physiol. 141: 1363-75, 2006
HDRb4 BARX2 YYTAATGRTTTTY Gene 250: 171-80, 2000
HDRb5 CDX1 CTTTATG Cell 83: 641-53, 1995
HDRb6 CDX2 (A/C)TTTAT(A/G) Eur. J. Biochem. 236: 670-81, 1996
HDRb7 CDX4 TTTATA/T Development 125: 4349-58, 1999
HDRb101 CHX10 TAATTAGC Nat. Genet. 25: 397-401, 2000
HDRb8 CRT1 TAATNNNATTA Biochem. Biophys. Res. Commun. 250: 305-11, 1998
HDRb9 CRX TAATC(C/A) Cell 91: 531-41, 1997
HDRb10 CSX TNAAGTG Mol. Cell. Biol. 19: 526-36, 1999
HDRb11 DFD TTAATGG EMBO J. 10: 1179-86, 1991
HDRb12 DLX2 CACTAATTGAG Mech. Dev. 53: 87-96, 1996
HDRb14 DLX3 (A/C/G)TAATT(G/A)(C/G) Nucleic Acids Res. 27: 764-70, 1999
HDRb13 DLX3 CANTTATCTCAG J. Biol. Chem. 275: 15295-304, 2000
HDRb15 DLX4 TCAATTAATTGA Gene 187: 55-61, 1997
HDRb16 DLX5 ATAATTAG J. Neurosci. 20: 709-21, 2000
HDRb17 DLX6 ATAATTAG J. Neurosci. 20: 709-21, 2000
HDRb18 EMX2 CACTAATTGAG Mech. Dev. 53: 87-96, 1996
HDRb19 EVX1 TNATTANNNNNTAATNG J. Biol. Chem. 270: 27695-701, 1996
HDRb108 EXD-LAB TGATGGATTG Development 126: 5137-48, 1999
HDRb20 GBX2 TCACTCATTAACC Cell 91: 185-95, 1997
HDRb93 HAT3.1 T(A/G)(A/C)ACCA Biochemistry 46: 7416-25, 2007
HDRb21 HESX1 TGCAATTAAATTCCCAGGATTATCAT Development 128: 5189-99, 2001
HDRb22 HK31 TAAGTA Nucleic Acids Res. 28: 2389-95, 2000
HDRb23 HLX1 TCAATTAATTGA Gene 187: 55-61, 1997
HDRb24 HME1 TCGGTAATTACA J. Mol. Biol. 276: 529-36, 1998
HDRb25 HNF1 AGTTAATATTTGACA Mol. Cell. Biol. 16: 6273-84, 1996
HDRb27 HNF6 GATATTGATTTTT Mol. Cell. Biol. 16: 6273-84, 1996
HDRb99 HOX11 GGCGGTAAGTGG Nucleic Acids Res. 23: 1928-35, 1995
HDRb28 HOX11-PBX2-PREP1 TTCATTCAA Biochem. Biophys. Res. Commun. 294: 23-34, 2002
HDRb29 HOXA2 (T/A)GAT(T/G)GA(T/A)(G/C)(G/T/A) Biochem. Biophys. Res. Commun. 316: 898-902, 2004
HDRb103 HOXA9 CAATTTTATTAA Mol. Cell. Biol. 27: 4207-16, 2007
HDRb30 HOXC13 TT(A/T)ATN(A/G)(A/G) J. Biol. Chem. 277: 3718-26, 2002
HDRb95 HOXC8 TAATG J. Biomol. Struct. Dyn. 22: 707-18, 2005
HDRb31 HOXD13 TTAC Am. J. Hum. Genet. 72: 984-97, 2003
HDRb107 HTH CTGTCA Development 126: 5137-48, 1999
HDRb32 IPF1 CC(T/C)TAATGGG EMBO J. 12: 4251-9, 1993
HDRb33 ISL-1 GCGTAATATCTG J. Mol. Biol. 288: 689-703, 1999
HDRb34 ISL-2 (C/T)TAA(T/G)(G/T)(G/A) Biochemistry 33: 15149-58, 1995
HDRb100 LAB-EXD-HTH TGAT(C/A)ATTACAGCTGACT Development 132: 1591-600, 2005
HDRb36 LH2 CTAATTA Mol. Cell. Biol. 14: 2985-93, 1994
HDRb37 LHX3 TAATTAATTAA Gene 277: 239-50, 2001
HDRb38 MEI1 TGACAG(G/C)T Mol. Cell. Biol. 17: 5679-87, 1997
HDRb102 MIRROR AAAACACGTGTTAA Proc. Natl. Acad. Sci. U.S.A. 102: 14671-6, 2005
HDRb39 MOX2 TCAATTAATTGA Gene 187: 55-61, 1997
HDRb40 MSX-1 CTAATTG Development 121: 1433-42, 1995
HDRb41 MSX-2 TCAATTAATTGA Gene 187: 55-61, 1997
HDRb42 N-OCT5 ATGCAAAT Oncogene 14: 1287-94, 1997
HDRb98 NCX CGGTAATTGG FEBS Lett. 475: 170-4, 2000
HDRb43 NK61 TTAATTAC J. Biol. Chem. 275: 14743-51, 2000
HDRb44 NKX2.2 T(T/C)AAGT(A/G)(C/G)TT Proc. Natl. Acad. Sci. U.S.A. 97: 9443-8, 2000
HDRb104 NOBOX TAATTG J. Biol. Chem. 281: 35747-56, 2006
HDRb46 OCT1 AAATGCAAATACC J. Neurosci. 15: 4762-85, 1995
HDRb47 OCT2 ATGCAAAT J. Neurosci. 15: 4762-85, 1995
HDRb48 OCT3 ATGCAAAT Nucleic Acids Res. 20: 4613-20, 1992
HDRb49 OTX2 CCTAATCCTGGGTTATC FEBS Lett. 445: 160-4, 1999
HDRb50 PAX2 TCA(C/T)GC(G/A)TGAC Development 122: 627-35, 1996
HDRb51 PAX3 TAATNNATTA J. Biol. Chem. 272: 14175-82, 1997
HDRb52 PAX4 ANNN(C/T)CACCC Mol. Cell. Biol. 19: 8272-80, 2000
HDRb53 PAX5 (T/C)(G/C)GT(C/T)(A/C)CGCNNCANTGNN(C/T) Cell 80: 639-50, 1995
HDRb54 PAX6 ANNTTCACGC(A/T)T(G/C)ANT(G/T)(A/C)N(T/C) Cell 80: 639-50, 1995
HDRb55 PAX7 ATTAA Genomics 47: 187-99, 1998
HDRb56 PBX1 TTGATTGAT Mol. Cell. Biol. 14: 3938-48, 1994
HDRb57 PBX1-HOXA10 ATGATTTATGA Mol. Cell. Biol. 16: 1734-45, 1996
HDRb58 PBX1-HOXB1 ATGATTGATCG Cell 96: 587-97, 1999
HDRb59 PBX1-HOXB4 ATGATTGATGA Mol. Cell. Biol. 16: 1734-45, 1996
HDRb60 PBX1-HOXB6 ATGATTTATTA Mol. Cell. Biol. 16: 1734-45, 1996
HDRb61 PBX1-HOXB7 ATGATTTATGCTCTA Mol. Cell. Biol. 16: 1734-45, 1996
HDRb62 PBX1-HOXB8 ATGATTTATGACTCTA Mol. Cell. Biol. 17: 4696-706, 1997
HDRb63 PBX1-HOXC6 (A/G)TGATTTATTACTTT Mol. Cell. Biol. 17: 4696-706, 1997
HDRb64 PBX1-HOXC6 (A/G)TGATTTATTACTTT Mol. Cell. Biol. 17: 4696-706, 1997
HDRb65 PBX1-MEIS1 TGATTGACAG(G/C)T Mol. Cell. Biol. 17: 5679-87, 1997
HDRb66 PBX2 TTGATTGAT Mol. Cell. Biol. 14: 3938-48, 1994
HDRb67 PBX2-HOXC6 GTGATTTATTGCTTT Mol. Cell. Biol. 17: 4696-706, 1997
HDRb68 PBX3 TTGATTGAT Mol. Cell. Biol. 14: 3938-48, 1994
HDRb69 PBX3-HOXC6 GTGATTTATT(G/A)CTTT Mol. Cell. Biol. 17: 4696-706, 1997
HDRb70 PITX1 TAATCC Mol. Endocrinol. 12: 428-41, 1998
HDRb71 PITX2 TAATCC Mol. Cell. Biol. 19: 7001-10, 2000
HDRb72 PMX1 TAATA Mol. Cell. Biol. 17: 6653-62, 1997
HDRb73 PNX1 TGACAG EMBO J. 17: 1423-33, 1998
HDRb74 POU1F1 TAAAT Science 243: 814-7, 1989
HDRb75 POU2F1 ATGCAAAT Gene 122: 387-8, 1993
HDRb76 POU3F1 TGGAGANAATAGAG J. Biol. Chem. 275: 15295-304, 2000
HDRb77 POU3F2 ATGCAAAT Oncogene 14: 1287-94, 1997
HDRb78 POU3F4 ATGCAAAT Ann. Otol. Rhinol. Laryngol. 106: 320-5, 1997
HDRb79 POU4F1 (A/G)CTCATTAA(T/C) J. Neurosci. 15: 4762-85, 1995
HDRb80 POU4F2 (A/G)CTCATTAA(T/C) J. Neurosci. 15: 4762-85, 1995
HDRb81 POU4F3 (A/G)CTCATTAA(T/C) J. Neurosci. 15: 4762-85, 1995
HDRb82 POU5F1 ATGCAAAT Nucleic Acids Res. 20: 4613-20, 1992
HDRb105 PROS C(A/T)(C/T)NNC(T/C) Proc. Natl. Acad. Sci. U.S.A. 94: 10991-6, 1997
HDRb106 PROS (T)AAGACG Dev. Cell 4: 853-64, 2003
HDRb92 QUOX-1 CAATC Biochemistry Mosc. 70: 920-5, 2005
HDRb109 SCR-EXD AGATTAATCG Cell 131: 530-43, 2007
HDRb110 SCR-EXD TGATTTATGG Cell 131: 530-43, 2007
HDRb83 SIX2 TCGAGCCGGTGTCAGGTTGCTCC FEBS Lett. 393: 259-63, 1996
HDRb84 SIX3 NNNATTANNNN Development 129: 2835-49, 2002
HDRb85 SIX4 TCGAGCCGGTGTCAGGTTGCTCC FEBS Lett. 393: 259-63, 1996
HDRb86 SIX5 TCGAGCCGGTGTCAGGTTGCTCC FEBS Lett. 393: 259-63, 1996
HDRb97 SO GTAANYNGANAY(C/G) Development 132: 2771-82, 2005
HDRb87 TCF-1 AACAAAG Blood 86: 3050-9, 1995
HDRb88 TGIF TGACAA J. Biol. Chem. 270: 31178-88, 1996
HDRb89 TTF-1 TCAAGTGTT Eur. J. Biochem. 241: 101-13, 1996
HDRb90 UBX TTAATGGCC EMBO J. 11: 4059-72, 1992
HDRb91 vnd/NK-2 T(T/C)AAGTG(G/C) Proc. Natl. Acad. Sci. U.S.A. 99: 12721-6, 2002
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