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Angela Baldo, Ph.D. - Computational Biologist

Teri Balch- Research Assistant Vegetable Crops

Joanne Labate, Ph.D. - Molecular Biologist

Larry Robertson, Ph.D. - Vegetable Crops Curator / Geneticist

Susan Sheffer - Molecular Biologist

Charles Simon - Supervisory Geneticist

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Angela M. Baldo

Computational Biologist

Publications

Isolation and Linkage Mapping of NBS-LRR Resistance Gene Analogs in Red Raspberry (Rubus idaeus L.) and Classification Among 269 Rosaceae NGS-LRR Genes - (Peer Reviewed Journal)

Samuelian, S.K., Baldo, A.M., Pattison, J.A., Weber, C. 2008. Isolation and Linkage Mapping of NBS-LRR Resistance Gene Analogs in Red Raspberry (Rubus idaeus L.) and Classification Among 269 Rosaceae NGS-LRR Genes. Electronic Online First Article http://www.springerlink.com/content/n423jnx741586448.

Identification of gene-specific markers for resistance to Erwinia amylovora (fire blight) in Malus (apple) by a functional genomics approach - (Abstract)

Norelli, J.L., Gardiner, S.E., Malnoy, M., Aldwinckle, H.S., Farrell, Jr, R.E., Horner, M., Celton, J., Baldo, A.M., Bowatta, D.R., Carlisle, C.M., Lalli, D., Bassett, C.L., Wisniewski, M.E. 2008. Identification of gene-specific markers for resistance to Erwinia amylovora (fire blight) in Malus (apple) by a functional genomics approach. American Phytopathological Society. 98:5114.

Apple root expressed sequence tags (ESTs) responding to water deficit - (Abstract)

Bassett, C.L., Wisniewski, M.E., Baldo, A.M., Korban, S., Gasic, K., Farrell, Jr., R.E. Apple root expressed sequence tags (ESTs) responding to water deficit. HortScience. Vol. 43, pg. 1079. 2008

Identification and mapping of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malus x domestica) with Erwinia amylovora - (Proceedings/Symposium)

Malnoy, M., Baldo, A.M., Borejsza-Wysocka, E., Norelli, J.L., Farrell, Jr., R.E., Bassett, C.L., Aldwinckle, H.S. 2008. Identification and mapping of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malus x domestica) with Erwinia amylovora. Acta Horticulturae. 793:195-199.

Rapid transcriptional response of Malus to Erwinia amylovora infection - (Proceedings/Symposium)

Norelli, J.L., Farrell, Jr., R.E., Bassett, C.L., Baldo, A.M., Lalli, D., Aldwinckle, H.S., Wisniewski, M.E. 2008. Rapid transcriptional response of Malus to Erwinia amylovora infection. Acta Horticulturae. 793: 189-194.

Using functional genomics to develop tools to breed fire blight resistant apples - (Abstract)

Norelli, J.L., Bassett, C.L., Farrell, Jr., R.E., Baldo, A.M., Malnoy, M., Borejsza-Wysocka, E., Lalli, D., Korban, S.S., Gardiner, S.E., Wisniewski, M.E., Celton, J., Aldwinckle, H.S. 2008. Using functional genomics to develop tools to breed fire blight resistant apples. Plant and Animal Genome Conference. P. 455.

High-efficiency generation of RNAi mutants of apple by use of multi-vector transformation - (Abstract)

Borejsza-Wysocka, E., Norelli, J.L., Bassett, C.L., Farrell, Jr., R.E., Baldo, A.M., Aldwinckle, H.S. 2008. High-efficiency generation of RNAi mutants of apple by use of multi-vector transformation. Plant and Animal Genome Conference. p 453.

Identification and mapping of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malus x domestica) with Erwinia amylovora - (Abstract)

Malnoy, M., Norelli, J.L., Bassett, C.L., Farrell, Jr., R.E., Baldo, A.M., Borejsza-Wysocka, E., Carlisle, C.M., Gardiner, S.E., Celton, J., Aldwinckle, H.S. 2008. Identification and mapping of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malus x domestica) with Erwinia amylovora. Plant and Animal Genome Conference. p. 454.

Differential expression of genes in apple during gradual water deficit conditions - (Abstract)

Bassett, C.L., Wisniewski, M.E., Baldo, A.M., Artlip, T.S., Farrell, Jr., R.E. Differential expression of genes in apple during gradual water deficit conditions. Plant and Animal Genome Conference Abstracts Vol. 16: pg 136, 2008.

Tomato - (Book/Chapter)

Labate, J.A., Grandillo, S., Fulton, T., Munos, S., Caicedo, A., Peralta, I., Ji, Y., Chetelat, R., Scott, J.W., Gonzalo, M.J., Francis, D., Yang, W., Van Der Knaap, E., Baldo, A.M., Smith-White, B., Mueller, L., Prince, J., Blanchard, N., Storey, D., Stevens, M., Robbins, M., Wang, J., Liedl, B., Oconnell, M., Stommel, J.R., Aoki, K., Iijima, Y., Slade, A., Hurst, S., Loeffler, D., Steine, M., Vafeados, D., Mcguire, C., Freeman, C., Amen, A., Goodstal, J., Facciotti, D., Van Eck, J., Causse, M. 2007. Tomato. Book Chapter. In: Kole, C. editor. Genome mapping and molecular breeding in plants. Volume 5 Vegetables. NY. Springer Publishing Co. p. 1-125.

Functional genomic analysis of apple (Malus) EST's associated with fire blight (Erwinia amylovora) - (Abstract)

Norelli, J.L., Borejsza-Wysocka, E., Baldo, A.M., Aldwinckle, H.S., Bassett, C.L., Farrell, R.E., Malnoy, M., Lalli, D., Korban, S.S., Gasic, K., Wisniewski, M.E. 2007. Functional genomic analysis of apple (Malus) EST's associated with fire blight (Erwinia amylovora). Phytopathology. 97:5185.

Rapid transcriptional response of apple to fire blight disease revealed by cDNA suppression subtractive hybridization analysis - (Peer Reviewed Journal)

Norelli, J.L., Farrell, Jr., R.E., Bassett, C.L., Baldo, A.M., Lalli, D., Aldwinckle, H.S., Wisniewski, M.E. 2008. Rapid transcriptional response of apple to fire blight disease revealed by cDNA suppression subtractive hybridization analysis. Tree Genetics & Genomics. doi: 0.1007/sl1295-008-0164-y.

The Distribution of Genetic Variation in Cultivated Tomato - (Proceedings/Symposium) - (01-Dec-06)

SNP Validation and Genetic Diversity in Cultivated Tomatoes and Grapes - (Proceedings/Symposium) - (01-Dec-06)

Computational Identification of Candidate Genes Involved in Response to Fire Blight in Apples - (Proceedings/Symposium) - (01-Dec-06)

Computational Reclassification of Resistance Gene Analogs in Rosaceae Based on the NBS-LRR Domain - (Proceedings/Symposium) - (01-Dec-06)

Identification of genes expressed in apple (Malus x domestica) in response to Erwinia amylovora infection - (Abstract)

Farrell, Jr., R.E., Bassett, C.L., Norelli, J.L., Baldo, A.M., Aldwinckle, H., Wisniewski, M.E. 2007. Identification of genes expressed in apple (Malus x domestica) in response to Erwinia amylovora infection [abstract]. Plant and Animal Genome Conference. p. 218.

Functional genomic response of apple to fire blight - (Abstract) - (20-Oct-06)

Transcriptional response in apple to fire blight disease - (Abstract)

Farrell, R., Norelli, J.L., Bassett, C.L., Baldo, A.M., Aldwinckle, H., Wisniewski, M.E. 2006. Transcriptional response in apple to fire blight disease. In: Abstracts of 23rd meeting of the Mid Atlantic Plant Molecular Biology Society Conference, August 17, 2006, Laurel, Maryland. 35 p.

USING FUNCTIONAL AND APPLIED GENOMICS TO IDENTIFY GENES THAT CONFER EITHER RESISTANCE OR SUSCEPTIBILITY TO FIRE BLIGHT - (Abstract)

Norelli, J.L., Bassett, C.L., Leder, E.H., Wisniewski, M.E., Baldo, A.M., Farrell, Jr, R.E., Borejsza-Wysocka, E., Malnoy, M., Aldwinckle, H.S., Gasic, K., Korban, S.S. 2006. Using functional and applied genomics to identify genes that confer either resistance or susceptibility to fire blight. American Phytopathological Society Annual Meeting. Phytopathology (2006)96:S86.

Rapid Genome Response of Malus to Infection by Erwinia amylovora - (Abstract) - (01-Jun-06)

Polymorphism among EST-based markers in tomato - (Abstract) - (13-Apr-06)

COMPUTATIONAL ANALYSIS OF PUTATIVE RESISTANCE GENE ANALOGS IN RASPBERRY - (Abstract)

Baldo, A.M., Samuelian, S., Weber, C. 2006. Computational analysis of putative resistance gene analogs in raspberry. Meeting Abstract. 3rd International Rosaceae Genomics Conference. Pg. 65.

STATUS OF USDA VITIS GERMPLASM COLLECTION IN GENEVA, NEW YORK WITH ACCESSIONS PRIMARILY OF NORTH AMERICAN ORIGIN - (Abstract)

Forsline, P.L., Cousins, P.S., Simon, C.J., Baldo, A.M., Schwaninger, H.R., Stover, E.W. 2006. Status of usda vitis germplasm collection in geneva, new york with accessions primarily of north american origin. Meeting Abstract. 9th International Conference on Grape Genetics and Breeding.

SEAN: SNP PREDICTION AND DISPLAY PROGRAM UTILIZING EST SEQUENCE CLUSTERS - (Peer Reviewed Journal)

Huntley, D., Baldo, A.M., Johri, S., Sergot, M. 2005. Sean: snp prediction and display program utilizing est sequence clusters. Bioinformatics. 10.1093/bioinformatics/btk006.

TEMPORAL RESPONSE OF APPLE (MALUS) TO FIRE BLIGHT DISEASE - (Proceedings/Symposium)

Norelli, J.L., Farrell, R.E., Bassett, C.L., Baldo, A.M., Aldwinckle, H.S., Wisniewski, M.E. 2006. Temporal response of apple (malus) to fire blight disease. In: Proceedings of the Plant and Animal Genome Conference, January 14-18, 2006, San Diego, CA. 227 p.

HIGHLY POLYMORPHIC GENES IN CULTIVATED TOMATO - (Peer Reviewed Journal)

Baldo, A.M., Robertson, L.D., Labate, J.A. 2005. Highly polymorphic genes in cultivated tomato. Hortscience. 40:999.

TOMATO SNP DISCOVERY BY EST MINING AND RESEQUENCING - (Peer Reviewed Journal)

Labate, J.A., Baldo, A.M. 2005. Tomato snp discovery by est mining and resequencing. Molecular Breeding. 16:343-349.

HIGH-THROUGHPUT SNP PREDICTION IN TOMATOES BASED ON ESTS - (Proceedings/Symposium)

Baldo, A.M., Huntley, D., Robertson, L.D., Labate, J.A. 2005. High-throughput snp prediction in tomatoes based on ests. Tomato Breeders Roundtable Proceedings. p. 7 In Final Abstracts Guide, Plant and Animal Genome XIII, San Diego, Ca.

USE OF SEQUENCE-BASED POLYMORPHISMS FOR STUDING GENETIC DIVERSITY OF WINTER SQUASH - (Proceedings/Symposium)

Robertson, L.D., Baldo, A.M., Sheffer, S.M., Labate, J.A. 2005. Use of sequence-based polymorphisms for studing genetic diversity of winter squash. Meeting Abstract. p. 153 In Final Abstracts Guide, Plant & Animal Genome XII, San Diego, CA.

DISCOVERY OF HIGHLY POLYMORPHIC GENES IN TOMATO CULTIVARS - (Peer Reviewed Journal)

Labate, J.A., Baldo, A.M. Discovery of highly polymorphic genes in tomato cultivars. Molecular Breeding. 2005.

PREDICTION OF SINGLE NUCLEOTIDE POLYMORPHISMS IN DOMESTIC TOMATO: HOW USEFUL IS EST SEQUENCE DIVERSITY? - (Proceedings/Symposium)

Baldo, A.M., Labate, J.A., Robertson, L.D., 2004. Prediction of single nucleotide polymorphisms in domestic tomato: how useful is EST sequence diversity?. 12th International Conference on Intelligent Systems for Molecular Biology (ISMB 2004)

A SEARCH FOR MOLECULAR DIVERSITY IN TOMATO - (Proceedings/Symposium)

BALDO, A.M., LABATE, J.A., ROBERTSON, L.D. A SEARCH FOR MOLECULAR DIVERSITY IN TOMATO. PLANT AND ANIMAL GENOME ABSTRACTS. 2004.

MINING THE EST DATABASE AND GENOMIC SEQUENCES FOR SNP DISCOVERY IN VITIS - (Proceedings/Symposium)

OWENS, C.L., BALDO, A.M. MINING THE EST DATABASE AND GENOMIC SEQUENCES FOR SNP DISCOVERY IN VITIS. PLANT AND ANIMAL GENOME ABSTRACTS. 2004.

SEQUENCE-BASED AMPLIFIED POLYMORPHISMS ARE USEFUL FOR STUDYING GENETIC DIVERSITY OF WINTER SQUASH - (Proceedings/Symposium)

ROBERTSON, L.D., BALDO, A.M., LABATE, J.A. SEQUENCE-BASED AMPLIFIED POLYMORPHISMS ARE USEFUL FOR STUDYING GENETIC DIVERSITY OF WINTER SQUASH. PLANT AND ANIMAL GENOME ABSTRACTS. 2004.

A SEARCH FOR MOLECULAR DIVERSITY IN TOMATO - (Proceedings/Symposium)

BALDO, A.M., LABATE, J.A., ROBERTSON, L.D. A SEARCH FOR MOLECULAR DIVERSITY IN TOMATO. New England Molecular Evoluationary Biologists Meeting, Storrs, CT. 2003. . 2003.

POLYMORPHISM PREDICTION - (Proceedings/Symposium)

BALDO, A.M., LABATE, J.A. POLYMORPHISM PREDICTION. ISMB Intelligent Systems in Molecular Biology. 2003.

Last Modified: 10/29/2008

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