HIV molecular immunology database
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All Immuno Tools
Epilign
PeptGen
Motif Scan
Sequence Locator
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Hepitopes
HLA Freq Anal
Mosaic
Epicover
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Sequence Alignments
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HIV Molecular Immunology Database: Tools & Links
Tools produced by the Los Alamos HIV Database
Epilign
Align amino acid epitopes against our alignments
PeptGen
Generate overlapping peptides for any protein
Hepitope
Search for hopeful epitopes based on HLA enrichment
HLA Frequency Analysis Tools
Calculate HLA frequencies or HLA linkage disequilibrium in a population
ELF
Epitope location finder
Motif Scan
Scan alignments for HLA binding motifs
PrimAlign
Align nucleotide sequences against our alignments
HIV/SIV Sequence Locator Tool (formerly HXB2 Numbering Engine)
SeqPublish
Produce pretty alignments for publication
BLAST
Search sequences against our annotated HIV sequences
ODprep/ODfit
Calculate antibody titers based on concentration and optical density data
Mosaic
Generate candidate vaccine protein cocktails
Epicover
Epitope coverage assessment tool
Posicover
Positional epitope coverage assessment tool
All Tools
List of all software and tools in
both
the HIV Sequence and Immunology Databases
External Tools
BIMAS HLA Peptide Binding Predictions
The SYFPEITHI Database
MHC ligands, peptide motifs and epitope prediction
NetChop
Neural network predictions for cleavage sites of the human proteasome
JenPep
Peptide binding database
HIV Vaccine Studies and Related Databases
IAVI Database of Preventive AIDS Vaccines in Human Trials
Database of HIV Vaccines in Development
from The Pipeline Project
NIH AIDSinfo HIV/AIDS Vaccines
LANL HIV/SIV Vaccine Trials Database
Immunology Related Links
IMGT, The International Immunogenetics Database
NIH AIDS Research and Reference Program
HIV immunology reagents
Antibody Resource
Immunology Link site
NIBSC, Centralised Facility for AIDS Reagents
dbMHC
The MHC database at NCBI
HLA Informatics Group-Anthony Nolan Bone Marrow Trust
Molecular Immunolgy Foundation
Allele Project
Allele frequencies in worldwide populations
Immune Epitope Database (IEDB)
Immunopaedia
A site designed to help close the gap between clinical observations and immunology knowledge
HIV/AIDS Links
HIV/AIDS Links
List of many HIV/AIDS-related links maintained by the HIV Sequence Database
Last modified: Tue Mar 25 13:24:24 MDT 2008
Questions or comments? Contact us at
immuno@lanl.gov