HIV sequence database
Table: SequenceEntry
Number of rows: 50
Number of fields: 11
| SE_id | SE_SSS_id | SE_GenBankLocus | SE_sequenceLength | SE_comment | SE_Sequence | SE_gbEntry | SE_hostname_cur | SE_timestamp | SE_timestamp2 | SE_gb_timestamp |
|---|---|---|---|---|---|---|---|---|---|---|
| 5 | H1D119V4 238 bp RNA VRL 23-MAY-1995 | 238 | Sequence PCR-amplified from a 1984 serum specimen from donor 1. Donor 1 was one of two donors and three recipients involved in a multiple-transmission case. One of the recipeints recieved blood products from both donors and became dually-infected. NCBI gi: 818032 | tagtacttggaatgttacggaagggtcaaataaaactgtaggaaacggcacaatcacgctcccatgcagaataaaacaaattataaacatgtggcaggaagtaggaaaagcaatgtatgcccctcccatcagaggacaaattaaatgttcatcaaatattacagggctgctattaacaagagatggtggtaatagtgggaacaacgagaccgaggtcttcagacctggaggaggagat | LOCUS H1D119V4 238 bp RNA VRL 23-MAY-1995 DEFINITION HIV-1 isolate D1-19 from USA 1984, env gene, V4-V5 region, partial cds. ACCESSION U11124 KEYWORDS dual infection, epidemiological linkage. SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 238) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 238) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave, San Francisco, CA 94118, USA COMMENT Sequence PCR-amplified from a 1984 serum specimen from donor 1. Donor 1 was one of two donors and three recipients involved in a multiple-transmission case. One of the recipeints recieved blood products from both donors and became dually-infected. NCBI gi: 818032 FEATURES Location/Qualifiers source 1..238 /organism="Human immunodeficiency virus type 1" /isolate="D1-19" CDS <1..>238 /gene="env" /note="NCBI gi: 818033" /codon_start=2 /product="envelope glycoprotein" /translation="STWNVTEGSNKTVGNGTITLPCRIKQIINMWQEVGKAMYAPPIR GQIKCSSNITGLLLTRDGGNSGNNETEVFRPGGGD" BASE COUNT 89 a 41 c 59 g 49 t ORIGIN 1 tagtacttgg aatgttacgg aagggtcaaa taaaactgta ggaaacggca caatcacgct 61 cccatgcaga ataaaacaaa ttataaacat gtggcaggaa gtaggaaaag caatgtatgc 121 ccctcccatc agaggacaaa ttaaatgttc atcaaatatt acagggctgc tattaacaag 181 agatggtggt aatagtggga acaacgagac cgaggtcttc agacctggag gaggagat // | 000000000388da3b | May 23 1995 12:00AM | |||
| 8 | H1D129V4 239 bp RNA VRL 23-MAY-1995 | 239 | NCBI gi: 818034 | agtacttggaatgttacggaagggtcaaataacactgtaagaaatggcacaatcacgctcccatgcagaataaaacaaattataaacatgtggcaggaagtaggaaaagcaatgtatgcccctcccatcagaggacaaattaaatgttcatcaaatattacagggctgctattaacaagagatggtggtaatagtgagaacaacaagaccgaggtcttcagacctggaggaggagatat | LOCUS H1D129V4 239 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate D1-29 envelope glycoprotein (env) V4-5 region, partial cds. ACCESSION U11125 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 239) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 239) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave, San Francisco, CA 94118, USA COMMENT NCBI gi: 818034 FEATURES Location/Qualifiers source 1..239 /organism="Human immunodeficiency virus type 1" /isolate="D1-29" CDS <1..>239 /gene="env" /note="NCBI gi: 818035" /codon_start=1 /product="envelope glycoprotein" /translation="STWNVTEGSNNTVRNGTITLPCRIKQIINMWQEVGKAMYAPPIR GQIKCSSNITGLLLTRDGGNSENNKTEVFRPGGGD" BASE COUNT 92 a 41 c 56 g 50 t ORIGIN 1 agtacttgga atgttacgga agggtcaaat aacactgtaa gaaatggcac aatcacgctc 61 ccatgcagaa taaaacaaat tataaacatg tggcaggaag taggaaaagc aatgtatgcc 121 cctcccatca gaggacaaat taaatgttca tcaaatatta cagggctgct attaacaaga 181 gatggtggta atagtgagaa caacaagacc gaggtcttca gacctggagg aggagatat // | 000000000388da3e | May 23 1995 12:00AM | |||
| 11 | H1D16TAT 285 bp RNA VRL 23-MAY-1995 | 285 | NCBI gi: 818036 | atggagccagtagatcctagactagagccctggaagcatccaggaagtcagcctaggactgcttgtaccacttgctattgtaaaaagtgttgctttcattgccaagtttgtttcataacaaaaggcttaggcatctcctatggcaggaagaagcggagacagcgacgaagagctcctcaaggcagtcagactcatcaagtttctctatcaaagcagtaagtagtacatgtaatgcaatctttacaaatattaacaatagtagcattagtagtagcaacaataata | LOCUS H1D16TAT 285 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate D1-6 tat gene, partial cds. ACCESSION U11126 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 285) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave, San Francisco, CA 94118, USA COMMENT NCBI gi: 818036 FEATURES Location/Qualifiers source 1..285 /organism="Human immunodeficiency virus type 1" /isolate="D1-6" CDS 1..>216 /gene="tat" /note="NCBI gi: 818037" /codon_start=1 /translation="MEPVDPRLEPWKHPGSQPRTACTTCYCKKCCFHCQVCFITKGLG ISYGRKKRRQRRRAPQGSQTHQVSLSKQ" BASE COUNT 95 a 57 c 61 g 72 t ORIGIN 1 atggagccag tagatcctag actagagccc tggaagcatc caggaagtca gcctaggact 61 gcttgtacca cttgctattg taaaaagtgt tgctttcatt gccaagtttg tttcataaca 121 aaaggcttag gcatctccta tggcaggaag aagcggagac agcgacgaag agctcctcaa 181 ggcagtcaga ctcatcaagt ttctctatca aagcagtaag tagtacatgt aatgcaatct 241 ttacaaatat taacaatagt agcattagta gtagcaacaa taata // | 000000000388da41 | May 23 1995 12:00AM | |||
| 14 | H1D222V4 255 bp RNA VRL 23-MAY-1995 | 255 | NCBI gi: 818038 | tacaacacaactgtttaatagtacttttaatattactggggatagtactgaaaggtcaaataacggaactatcacactcccctgcagaataaaacaaattataaacctgtggcaggaagtaggaaaagcaatgtatgcccctcccatcagaggacaagttagatgttcatcaaatattacagggctgctattaacaagagatggtggtggtaataacgagaacgagaccgagatcttacgacctggaggaggaga | LOCUS H1D222V4 255 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate D2-22 envelope glycoprotein (env) V4-5 region, partial cds. ACCESSION U11127 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 255) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 255) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave, San Francisco, CA 94118, USA COMMENT NCBI gi: 818038 FEATURES Location/Qualifiers source 1..255 /organism="Human immunodeficiency virus type 1" /isolate="D2-22" CDS <1..>255 /gene="env" /note="NCBI gi: 818039" /codon_start=2 /product="envelope glycoprotein" /translation="TTQLFNSTFNITGDSTERSNNGTITLPCRIKQIINLWQEVGKAM YAPPIRGQVRCSSNITGLLLTRDGGGNNENETEILRPGGG" BASE COUNT 94 a 46 c 57 g 58 t ORIGIN 1 tacaacacaa ctgtttaata gtacttttaa tattactggg gatagtactg aaaggtcaaa 61 taacggaact atcacactcc cctgcagaat aaaacaaatt ataaacctgt ggcaggaagt 121 aggaaaagca atgtatgccc ctcccatcag aggacaagtt agatgttcat caaatattac 181 agggctgcta ttaacaagag atggtggtgg taataacgag aacgagaccg agatcttacg 241 acctggagga ggaga // | 000000000388da44 | May 23 1995 12:00AM | |||
| 17 | H1D240V4 255 bp RNA VRL 23-MAY-1995 | 255 | NCBI gi: 818040 | ttcaacacaactgtttaataatacttttaatattactggggatagtactgaaaggtcaaataacggaactatcacactcccctgcagaataaaacaaattataaacctgtggcaggaagtaggaaaagcaatgtatgcccctcccatcagaggacaagttagatgttcatcaaatattacagggctgctattaacaagagatggtggtggtaataacgagaacgagaccgagatcttcagacctggaggaggaga | LOCUS H1D240V4 255 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate D2-40 envelope glycoprotein (env) V4-5 region, partial cds. ACCESSION U11128 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 255) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 255) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave, San Francisco, CA 94118, USA COMMENT NCBI gi: 818040 FEATURES Location/Qualifiers source 1..255 /organism="Human immunodeficiency virus type 1" /isolate="D2-40" CDS <1..>255 /gene="env" /note="NCBI gi: 818041" /codon_start=2 /product="envelope glycoprotein" /translation="STQLFNNTFNITGDSTERSNNGTITLPCRIKQIINLWQEVGKAM YAPPIRGQVRCSSNITGLLLTRDGGGNNENETEIFRPGGG" BASE COUNT 94 a 46 c 56 g 59 t ORIGIN 1 ttcaacacaa ctgtttaata atacttttaa tattactggg gatagtactg aaaggtcaaa 61 taacggaact atcacactcc cctgcagaat aaaacaaatt ataaacctgt ggcaggaagt 121 aggaaaagca atgtatgccc ctcccatcag aggacaagtt agatgttcat caaatattac 181 agggctgcta ttaacaagag atggtggtgg taataacgag aacgagaccg agatcttcag 241 acctggagga ggaga // | 000000000388da47 | May 23 1995 12:00AM | |||
| 20 | H1D264V4 255 bp RNA VRL 23-MAY-1995 | 255 | NCBI gi: 818044 | ttcaacacaactgtttaatagtacttttaatattactggggatagtactgaaaggtcaaataacggaactatcacactcccctgcagaataaaacaaattataaacctgtggcaggaagtaggaaaagcaatgtatgcccctcccatcagaggacaagttagatgttcatcaaatattacagggctgctattaacaagagatggtggtggtaataacacgaacgagaccgagatcttcagacctggaggaggaga | LOCUS H1D264V4 255 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate D2-64 envelope glycoprotein (env) V4-5 region, partial cds. ACCESSION U11130 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 255) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 255) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave, San Francisco, CA 94118, USA COMMENT NCBI gi: 818044 FEATURES Location/Qualifiers source 1..255 /organism="Human immunodeficiency virus type 1" /isolate="D2-64" CDS <1..>255 /gene="env" /note="NCBI gi: 818045" /codon_start=2 /product="envelope glycoprotein" /translation="STQLFNSTFNITGDSTERSNNGTITLPCRIKQIINLWQEVGKAM YAPPIRGQVRCSSNITGLLLTRDGGGNNTNETEIFRPGGG" BASE COUNT 93 a 47 c 56 g 59 t ORIGIN 1 ttcaacacaa ctgtttaata gtacttttaa tattactggg gatagtactg aaaggtcaaa 61 taacggaact atcacactcc cctgcagaat aaaacaaatt ataaacctgt ggcaggaagt 121 aggaaaagca atgtatgccc ctcccatcag aggacaagtt agatgttcat caaatattac 181 agggctgcta ttaacaagag atggtggtgg taataacacg aacgagaccg agatcttcag 241 acctggagga ggaga // | 000000000388da4d | May 23 1995 12:00AM | |||
| 23 | H1D26TAT 285 bp RNA VRL 23-MAY-1995 | 285 | NCBI gi: 818042 | atggagccagtagatcctagactagagccctggaagcatccaggaagtcagcctaggactgcttgtaccacttgctattgtaaacagtgttgctttcattgtcaagtttgtttcataacaaaaggcttaggcatctcctatggcaggaagaagcggagacagcgacgaagagctcctcaagacagtgagactcatcaagcttatctatcaaagcagtaagtagtacatgtaatgcaatctttacaaatattagcaatagtagcattagtagtagcaataataata | LOCUS H1D26TAT 285 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate D2-6 tat gene, partial cds. ACCESSION U11129 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 285) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave, San Francisco, CA 94118, USA COMMENT NCBI gi: 818042 FEATURES Location/Qualifiers source 1..285 /organism="Human immunodeficiency virus type 1" /isolate="D2-6" CDS 1..>216 /gene="tat" /note="NCBI gi: 818043" /codon_start=1 /translation="MEPVDPRLEPWKHPGSQPRTACTTCYCKQCCFHCQVCFITKGLG ISYGRKKRRQRRRAPQDSETHQAYLSKQ" BASE COUNT 95 a 55 c 62 g 73 t ORIGIN 1 atggagccag tagatcctag actagagccc tggaagcatc caggaagtca gcctaggact 61 gcttgtacca cttgctattg taaacagtgt tgctttcatt gtcaagtttg tttcataaca 121 aaaggcttag gcatctccta tggcaggaag aagcggagac agcgacgaag agctcctcaa 181 gacagtgaga ctcatcaagc ttatctatca aagcagtaag tagtacatgt aatgcaatct 241 ttacaaatat tagcaatagt agcattagta gtagcaataa taata // | 000000000388da4a | May 23 1995 12:00AM | |||
| 26 | H1D27TAT 285 bp RNA VRL 23-MAY-1995 | 285 | NCBI gi: 818046 | atggagccagtagatcctggactagagccctggaagcatccaggaagtcagcctaggactgcttgtaccacttgctattgtaaacagtgttgctttcattgtcaagtttgtttcataacaaaaggcttaggcatctcctatggcaggaagaagcggagacagcgacgaagagctcatcaagacagtgagactcatcaagcttctctatcaaagcagtaagtagtacatgtaatgcaatctttacaaatattagcaatagtagcattagtagtagcaataataata | LOCUS H1D27TAT 285 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate D2-7 tat gene, partial cds. ACCESSION U11131 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 285) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave, San Francisco, CA 94118, USA COMMENT NCBI gi: 818046 FEATURES Location/Qualifiers source 1..285 /organism="Human immunodeficiency virus type 1" /isolate="D2-7" CDS 1..>216 /gene="tat" /note="NCBI gi: 818047" /codon_start=1 /translation="MEPVDPGLEPWKHPGSQPRTACTTCYCKQCCFHCQVCFITKGLG ISYGRKKRRQRRRAHQDSETHQASLSKQ" BASE COUNT 94 a 55 c 63 g 73 t ORIGIN 1 atggagccag tagatcctgg actagagccc tggaagcatc caggaagtca gcctaggact 61 gcttgtacca cttgctattg taaacagtgt tgctttcatt gtcaagtttg tttcataaca 121 aaaggcttag gcatctccta tggcaggaag aagcggagac agcgacgaag agctcatcaa 181 gacagtgaga ctcatcaagc ttctctatca aagcagtaag tagtacatgt aatgcaatct 241 ttacaaatat tagcaatagt agcattagta gtagcaataa taata // | 000000000388da50 | May 23 1995 12:00AM | |||
| 29 | H1DR104TAT 285 bp RNA VRL 23-MAY-1995 | 285 | NCBI gi: 818052 | atggagccagtagatcctagactagagccctggaagcatccaggaagtcagcctaggactgcttgtaccacttgctactgtaaacagtgttgctttcattgtcaagtttgtttcataacaaaaggcttaggcatctcctatggcaggaagaagcggagacagcgacgaagagctcatcaagacagtgagactcatcaagcttatctatcaaagcagtaagtagtacatgtaatgcaacctttacaaatattagcaatagtagcagtagtagtagcagcaataata | LOCUS H1DR104TAT 285 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR104 tat gene, partial cds. ACCESSION U11134 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 285) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave, San Francisco, CA 94118, USA COMMENT NCBI gi: 818052 FEATURES Location/Qualifiers source 1..285 /organism="Human immunodeficiency virus type 1" /isolate="DR104" CDS 1..>216 /gene="tat" /note="NCBI gi: 818053" /codon_start=1 /translation="MEPVDPRLEPWKHPGSQPRTACTTCYCKQCCFHCQVCFITKGLG ISYGRKKRRQRRRAHQDSETHQAYLSKQ" BASE COUNT 95 a 57 c 64 g 69 t ORIGIN 1 atggagccag tagatcctag actagagccc tggaagcatc caggaagtca gcctaggact 61 gcttgtacca cttgctactg taaacagtgt tgctttcatt gtcaagtttg tttcataaca 121 aaaggcttag gcatctccta tggcaggaag aagcggagac agcgacgaag agctcatcaa 181 gacagtgaga ctcatcaagc ttatctatca aagcagtaag tagtacatgt aatgcaacct 241 ttacaaatat tagcaatagt agcagtagta gtagcagcaa taata // | 000000000388da5a | May 23 1995 12:00AM | |||
| 31 | H1DR105TAT 285 bp RNA VRL 23-MAY-1995 | 285 | NCBI gi: 818054 | atggagccagtagatcctagactagagccctggaagcatccaggaagtcagcctaggactgcttgtaccacttgctactgtaaacagtgttgctttcattgtcaagtttgtttcataacaaaaggcttaggcatctcctatggcaggaagaagcggagacagcgacgaagagctcctcaaggcagtcagactcatcaagtttctctatcaaagcagtaagtagtacatgtaatgcaacctttacaaatattagcaatagtagcattagtagtagcaacaataata | LOCUS H1DR105TAT 285 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR105 tat gene, partial cds. ACCESSION U11135 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 285) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave, San Francisco, CA 94118, USA COMMENT NCBI gi: 818054 FEATURES Location/Qualifiers source 1..285 /organism="Human immunodeficiency virus type 1" /isolate="DR105" CDS 1..>216 /gene="tat" /note="NCBI gi: 818055" /codon_start=1 /translation="MEPVDPRLEPWKHPGSQPRTACTTCYCKQCCFHCQVCFITKGLG ISYGRKKRRQRRRAPQGSQTHQVSLSKQ" BASE COUNT 93 a 59 c 62 g 71 t ORIGIN 1 atggagccag tagatcctag actagagccc tggaagcatc caggaagtca gcctaggact 61 gcttgtacca cttgctactg taaacagtgt tgctttcatt gtcaagtttg tttcataaca 121 aaaggcttag gcatctccta tggcaggaag aagcggagac agcgacgaag agctcctcaa 181 ggcagtcaga ctcatcaagt ttctctatca aagcagtaag tagtacatgt aatgcaacct 241 ttacaaatat tagcaatagt agcattagta gtagcaacaa taata // | 000000000388da5d | May 23 1995 12:00AM | |||
| 34 | H1DR106V3 610 bp RNA VRL 23-MAY-1995 | 610 | This sequence is from a March 1986 blood sample from patient DR, who was a recipient of blood products from two different donors designated D1 and D2. DR had marked lymphadenopathy at the time of blood drawing. The DR106 cloned PCR product shows evidence of recombination between D1 and D2-like sequences. All HIV-1 sequences involved are subtype B. D1 and D2 both donated the blood in 1984, and patient DR (as well as two other recipients R1 and R2) received blood products in 1984. DR was two months old in October 1984 when transfused with packed erythrocytes from D1 and D2. NCBI gi: 818056 | ggtagtaattagatctgacaatttcacggacaatgctaaaaccataatagtacagctaaaagagtctgtagaaattaattgttcaagacccaacaacaatacaagaaagagtataaatataggaccagggagagcattttatacaacaggagaaataataggagatataagacaagcacattgtaaccttagtagagcaaaatgggagaacactttagaacagatagttagaaaattaagagaagaatttcagaataaaacaataatctttaatcaatcctcaggaggagacccagaaattgtaacgcacagttttaattgtggaggggaatttttctactgtaatacaacacaactgtttaatagtacttttaatattactaggaatagtactgaaaggtcagataacggaactatcacactcccctgcagaataaaacaaattataaacatgtggcaggaagtaggaaaagcaatgtatgcccctcccatcagaggacaaattaaatgttcatcaaatattacagggctgctattaacaagagatggtggtaatagtgagaacaacgagactgaggtcttcagacctggaggaggagatatgagggac | LOCUS H1DR106V3 610 bp RNA VRL 23-MAY-1995 DEFINITION HIV-1 isolate DR106 from USA 1986, env gene, V3 region, partial cds. ACCESSION U11136 KEYWORDS dual infection, intrasubtype recombination, epidemiological linkage, transfusion. SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 610) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 610) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave, San Francisco, CA 94118, USA COMMENT This sequence is from a March 1986 blood sample from patient DR, who was a recipient of blood products from two different donors designated D1 and D2. DR had marked lymphadenopathy at the time of blood drawing. The DR106 cloned PCR product shows evidence of recombination between D1 and D2-like sequences. All HIV-1 sequences involved are subtype B. D1 and D2 both donated the blood in 1984, and patient DR (as well as two other recipients R1 and R2) received blood products in 1984. DR was two months old in October 1984 when transfused with packed erythrocytes from D1 and D2. NCBI gi: 818056 FEATURES Location/Qualifiers source 1..610 /organism="Human immunodeficiency virus type 1" /isolate="DR106" CDS <1..>610 /gene="env" /note="NCBI gi: 818057" /codon_start=2 /product="envelope glycoprotein" /translation="VVIRSDNFTDNAKTIIVQLKESVEINCSRPNNNTRKSINIGPGR AFYTTGEIIGDIRQAHCNLSRAKWENTLEQIVRKLREEFQNKTIIFNQSSGGDPEIVT HSFNCGGEFFYCNTTQLFNSTFNITRNSTERSDNGTITLPCRIKQIINMWQEVGKAMY APPIRGQIKCSSNITGLLLTRDGGNSENNETEVFRPGGGDMRD" BASE COUNT 249 a 92 c 125 g 144 t ORIGIN 1 ggtagtaatt agatctgaca atttcacgga caatgctaaa accataatag tacagctaaa 61 agagtctgta gaaattaatt gttcaagacc caacaacaat acaagaaaga gtataaatat 121 aggaccaggg agagcatttt atacaacagg agaaataata ggagatataa gacaagcaca 181 ttgtaacctt agtagagcaa aatgggagaa cactttagaa cagatagtta gaaaattaag 241 agaagaattt cagaataaaa caataatctt taatcaatcc tcaggaggag acccagaaat 301 tgtaacgcac agttttaatt gtggagggga atttttctac tgtaatacaa cacaactgtt 361 taatagtact tttaatatta ctaggaatag tactgaaagg tcagataacg gaactatcac 421 actcccctgc agaataaaac aaattataaa catgtggcag gaagtaggaa aagcaatgta 481 tgcccctccc atcagaggac aaattaaatg ttcatcaaat attacagggc tgctattaac 541 aagagatggt ggtaatagtg agaacaacga gactgaggtc ttcagacctg gaggaggaga 601 tatgagggac // | 000000000388da60 | May 23 1995 12:00AM | |||
| 37 | H1DR10TAT 285 bp RNA VRL 23-MAY-1995 | 285 | NCBI gi: 818050 | atggagccagtagatcctagactagagcccgggaagcatccaggaagtcagcctaggactgcttgtaccacttgctactgtaaacagtgttgctttcattgtcaagtttgtttcataacaaaaggcttaggcatctcctatggcaggaagaagcggagacagcgacgaagaactcctcaaggcagtcagactcatcaagtttctctatcaaagcagtaagtagtacatgtaatgcaacctttacaaatattagcaatagtagcattagtagtagcaacaataata | LOCUS H1DR10TAT 285 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR10 tat gene, partial cds. ACCESSION U11133 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 285) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave, San Francisco, CA 94118, USA COMMENT NCBI gi: 818050 FEATURES Location/Qualifiers source 1..285 /organism="Human immunodeficiency virus type 1" /isolate="DR10" CDS 1..>216 /gene="tat" /note="NCBI gi: 818051" /codon_start=1 /translation="MEPVDPRLEPGKHPGSQPRTACTTCYCKQCCFHCQVCFITKGLG ISYGRKKRRQRRRTPQGSQTHQVSLSKQ" BASE COUNT 94 a 59 c 62 g 70 t ORIGIN 1 atggagccag tagatcctag actagagccc gggaagcatc caggaagtca gcctaggact 61 gcttgtacca cttgctactg taaacagtgt tgctttcatt gtcaagtttg tttcataaca 121 aaaggcttag gcatctccta tggcaggaag aagcggagac agcgacgaag aactcctcaa 181 ggcagtcaga ctcatcaagt ttctctatca aagcagtaag tagtacatgt aatgcaacct 241 ttacaaatat tagcaatagt agcattagta gtagcaacaa taata // | 000000000388da57 | May 23 1995 12:00AM | |||
| 40 | H1DR11TAT 285 bp RNA VRL 23-MAY-1995 | 285 | NCBI gi: 818058 | atggagccagtagatcctagactagagccctggaagcatccaggaagtcagcctaggactgcttgtaccacttgctactgtaaacagtgttgctttcattgtcaagtttgtttcataacaaaaggcttaggcatctcctatggcaggaagaagcggagacagcgacgaagagctcatcaagacagtgagactcatcaagcttatctatcaaagcagtaagtagtacatgtaatgcaacctttacaaatattagcaatagtagcattagtagtagcaacaataata | LOCUS H1DR11TAT 285 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR11 tat gene, partial cds. ACCESSION U11137 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 285) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave, San Francisco, CA 94118, USA COMMENT NCBI gi: 818058 FEATURES Location/Qualifiers source 1..285 /organism="Human immunodeficiency virus type 1" /isolate="DR11" CDS 1..>216 /gene="tat" /note="NCBI gi: 818059" /codon_start=1 /translation="MEPVDPRLEPWKHPGSQPRTACTTCYCKQCCFHCQVCFITKGLG ISYGRKKRRQRRRAHQDSETHQAYLSKQ" BASE COUNT 96 a 57 c 62 g 70 t ORIGIN 1 atggagccag tagatcctag actagagccc tggaagcatc caggaagtca gcctaggact 61 gcttgtacca cttgctactg taaacagtgt tgctttcatt gtcaagtttg tttcataaca 121 aaaggcttag gcatctccta tggcaggaag aagcggagac agcgacgaag agctcatcaa 181 gacagtgaga ctcatcaagc ttatctatca aagcagtaag tagtacatgt aatgcaacct 241 ttacaaatat tagcaatagt agcattagta gtagcaacaa taata // | 000000000388da63 | May 23 1995 12:00AM | |||
| 42 | H1DR12TAT 285 bp RNA VRL 23-MAY-1995 | 285 | NCBI gi: 818060 | atggagccagtagatcctagactagagccctgggagcatccaggaagtcagcctaggactgcttgtaccacttgctactgtaaacagtgttgctttcattgtcaagtttgtttcataacaaaaggcttaggcatctcctatggcaggaagaagcggagacagcgacgaagaactcctcaaggcagtcagactcatcaagtttctctatcaaagcagtaagtagtacatgtaatgcaacctttacaaatattagcaatagtagcattagtagtagcaacaataata | LOCUS H1DR12TAT 285 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR12 tat gene, partial cds. ACCESSION U11138 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 285) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave, San Francisco, CA 94118, USA COMMENT NCBI gi: 818060 FEATURES Location/Qualifiers source 1..285 /organism="Human immunodeficiency virus type 1" /isolate="DR12" CDS 1..>216 /gene="tat" /note="NCBI gi: 818061" /codon_start=1 /translation="MEPVDPRLEPWEHPGSQPRTACTTCYCKQCCFHCQVCFITKGLG ISYGRKKRRQRRRTPQGSQTHQVSLSKQ" BASE COUNT 93 a 59 c 62 g 71 t ORIGIN 1 atggagccag tagatcctag actagagccc tgggagcatc caggaagtca gcctaggact 61 gcttgtacca cttgctactg taaacagtgt tgctttcatt gtcaagtttg tttcataaca 121 aaaggcttag gcatctccta tggcaggaag aagcggagac agcgacgaag aactcctcaa 181 ggcagtcaga ctcatcaagt ttctctatca aagcagtaag tagtacatgt aatgcaacct 241 ttacaaatat tagcaatagt agcattagta gtagcaacaa taata // | 000000000388da66 | May 23 1995 12:00AM | |||
| 45 | H1DR13TAT 285 bp RNA VRL 23-MAY-1995 | 285 | NCBI gi: 818062 | atggagccagtagatcctagactagagccctggaagcatccaggaagtcagcctaggactgcttgtaccacttgctactgtaaacagtgttgctttcattgtcaagtttgtttcataacaaaaggcttaggcatctcctatggcaggaagaagcggagacagcgacgaagaactcatcaagacagtgagactcatcaagcttatctatcaaagcagtaagtagtacatgtaatgcaacctttacaaatattagcaatagtagcattagtagtagcaacaataata | LOCUS H1DR13TAT 285 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR13 tat gene, partial cds. ACCESSION U11139 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 285) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave, San Francisco, CA 94118, USA COMMENT NCBI gi: 818062 FEATURES Location/Qualifiers source 1..285 /organism="Human immunodeficiency virus type 1" /isolate="DR13" CDS 1..>216 /gene="tat" /note="NCBI gi: 818063" /codon_start=1 /translation="MEPVDPRLEPWKHPGSQPRTACTTCYCKQCCFHCQVCFITKGLG ISYGRKKRRQRRRTHQDSETHQAYLSKQ" BASE COUNT 97 a 57 c 61 g 70 t ORIGIN 1 atggagccag tagatcctag actagagccc tggaagcatc caggaagtca gcctaggact 61 gcttgtacca cttgctactg taaacagtgt tgctttcatt gtcaagtttg tttcataaca 121 aaaggcttag gcatctccta tggcaggaag aagcggagac agcgacgaag aactcatcaa 181 gacagtgaga ctcatcaagc ttatctatca aagcagtaag tagtacatgt aatgcaacct 241 ttacaaatat tagcaatagt agcattagta gtagcaacaa taata // | 000000000388da69 | May 23 1995 12:00AM | |||
| 46 | D12584 409 bp DNA VRL 06-OCT-1992 | 409 | Submitted (15-Oct-1991) to DDBJ by: Hiroyuki Shimizu AIDS Research Center National Institute of Health 4-7-1 Gakuen Musashimurayama-shi Tokyo 208 Japan Phone: 0425-61-0771 Fax: 0425-65-3315. V3-ID: B_JP.ETR A Japanese isolate from long-term cell culture with a truncated env gene, due to a point mutation of a CAG codon to a TAG stop codon. (Shimizu92). GenBank accession numbers D12582, D01205--D01207, D12584 and D12571 | gctagttggagtaatagatcttttaatgaaatttgggataacatgacctggatggagtgggaaagagaaattgacaattacaccaacttaatatacaacttaattgaagaatcgcagtatcaacaggaaaagaatgaacaagacttattggcattagataaatgggacagtttgtggaattggtttagcataacaaaatggctgtggtatataagaatattcataatgatagtaggaggcttaataggtttaagaatagtttttactgtactttctatagtgaatagagttaggcagggatactcaccattatcgcttcagacccgcctcccagctcagaggggacccgacaggcccgaaggaatcgaagaagaaggtggagagaaagacagagacagatccggtccat | LOCUS D12584 409 bp DNA VRL 06-OCT-1992 DEFINITION Human immunodeficiency virus type 1 proviral DNA encoding envelope polyprotein, partial sequence. ACCESSION D12584 D01207 NID g221483 KEYWORDS CD4 binding; envelope polyprotein; membrane associated. SOURCE Human immunodeficiency virus type 1 (strain KB-1gp41) proviral DNA. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate lentivirus group. REFERENCE 1 (bases 1 to 409) AUTHORS Shimizu,H., Hasebe,F., Tsuchie,H., Morikawa,S., Ushijima,H. and Kitamura,T. TITLE Analysis of a human immunodeficiency virus type 1 isolate carrying a truncated transmembrane glycoprotein JOURNAL Virology 189, 534-546 (1992) MEDLINE 92351552 COMMENT Submitted (15-Oct-1991) to DDBJ by: Hiroyuki Shimizu AIDS Research Center National Institute of Health 4-7-1 Gakuen Musashimurayama-shi Tokyo 208 Japan Phone: 0425-61-0771 Fax: 0425-65-3315. V3-ID: B_JP.ETR A Japanese isolate from long-term cell culture with a truncated env gene, due to a point mutation of a CAG codon to a TAG stop codon. (Shimizu92). GenBank accession numbers D12582, D01205--D01207, D12584 and D12571 FEATURES Location/Qualifiers source 1..409 /organism="Human immunodeficiency virus type 1" CDS <1..>409 /codon_start=1 /product="envelope polyprotein" /db_xref="PID:g221484" /translation="ASWSNRSFNEIWDNMTWMEWEREIDNYTNLIYNLIEESQYQQEK NEQDLLALDKWDSLWNWFSITKWLWYIRIFIMIVGGLIGLRIVFTVLSIVNRVRQGYS PLSLQTRLPAQRGPDRPEGIEEEGGEKDRDRSGP" BASE COUNT 146 a 60 c 100 g 103 t ORIGIN 1 gctagttgga gtaatagatc ttttaatgaa atttgggata acatgacctg gatggagtgg 61 gaaagagaaa ttgacaatta caccaactta atatacaact taattgaaga atcgcagtat 121 caacaggaaa agaatgaaca agacttattg gcattagata aatgggacag tttgtggaat 181 tggtttagca taacaaaatg gctgtggtat ataagaatat tcataatgat agtaggaggc 241 ttaataggtt taagaatagt ttttactgta ctttctatag tgaatagagt taggcaggga 301 tactcaccat tatcgcttca gacccgcctc ccagctcaga ggggacccga caggcccgaa 361 ggaatcgaag aagaaggtgg agagaaagac agagacagat ccggtccat // | 00000000038889bc | Oct 6 1992 12:00AM | |||
| 48 | H1DR15TAT 285 bp RNA VRL 23-MAY-1995 | 285 | NCBI gi: 818064 | atggagccagtagatcctagactagagccctggaagcatccaggaagtcagcctaggactgcttgtaccacttgctattgtaaaaagtgttgctttcattgtcaagtttgtttcataacaaaaggcttaggcatctcctatggcaggaagaagcggagacagcgacgaagaactcctcaaggcagtcagactcatcaagtttctctatcaaagcagtaagtagtacatgtaatgcaatctttacaaatattagcaatagtagcattagtagtagcagcaataata | LOCUS H1DR15TAT 285 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR15 tat gene, partial cds. ACCESSION U11140 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 285) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave, San Francisco, CA 94118, USA COMMENT NCBI gi: 818064 FEATURES Location/Qualifiers source 1..285 /organism="Human immunodeficiency virus type 1" /isolate="DR15" CDS 1..>216 /gene="tat" /note="NCBI gi: 818065" /codon_start=1 /translation="MEPVDPRLEPWKHPGSQPRTACTTCYCKKCCFHCQVCFITKGLG ISYGRKKRRQRRRTPQGSQTHQVSLSKQ" BASE COUNT 94 a 56 c 62 g 73 t ORIGIN 1 atggagccag tagatcctag actagagccc tggaagcatc caggaagtca gcctaggact 61 gcttgtacca cttgctattg taaaaagtgt tgctttcatt gtcaagtttg tttcataaca 121 aaaggcttag gcatctccta tggcaggaag aagcggagac agcgacgaag aactcctcaa 181 ggcagtcaga ctcatcaagt ttctctatca aagcagtaag tagtacatgt aatgcaatct 241 ttacaaatat tagcaatagt agcattagta gtagcagcaa taata // | 000000000388da6c | May 23 1995 12:00AM | |||
| 49 | D89966 129 bp DNA VRL 20-FEB-1997 | 129 | gtacaaattaattgtacaagacccaacaacaatacaagaaaaggtatacatatgggaccagggggagcattttatacaacaggagagataacaggagatataagacaagcacattgtaaccttagtata | LOCUS D89966 129 bp DNA VRL 20-FEB-1997 DEFINITION HIV-1 proviral DNA for envelope protein, partial cds, polymorphism. ACCESSION D89966 NID g1840412 KEYWORDS polymorphism; envelope protein; env. SOURCE Human immunodeficiency virus type 1 (isolate:I-1-10c) proviral DNA. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate lentivirus group. REFERENCE 1 (bases 1 to 129) AUTHORS Honda,M. TITLE Direct Submission JOURNAL Submitted (19-DEC-1996) to the DDBJ/EMBL/GenBank databases. Mitsuo Honda, National Institute of Health, AIDS Research Center; Toyama 1-23-1, Shinjukuku, Tokyo 162, Japan (E-mail:mhonda@nih.go.jp, Tel:+81-03-5285-1111, Fax:+81-03-5285-1183) REFERENCE 2 (sites) AUTHORS Okamoto,Y., Shiosaki,K., Eda,Y., Tokiyoshi,S., Yamaguchi,Y., Gojobori,T., Hachimori,T., Yamazaki,S. and Honda,M. TITLE Father-to-mother-to-infant Transmission of HIV-1:Clonally Transmitted I solate of Infant Mutates More Rapidly Than That of The Mother and Rapidly Loses Reactivity with Neutralizing Antibody JOURNAL Microbiol. Immunol. (1997) In press FEATURES Location/Qualifiers source 1..129 /organism="Human immunodeficiency virus type 1" /proviral /isolate="I-1-10c" CDS <1..>129 /gene="env" /note="C2-V3 region of env gene" /codon_start=1 /product="envelope protein" /db_xref="PID:g1840413" /translation="VQINCTRPNNNTRKGIHMGPGGAFYTTGEITGDIRQAHCNLSI" BASE COUNT 57 a 20 c 26 g 26 t ORIGIN 1 gtacaaatta attgtacaag acccaacaac aatacaagaa aaggtataca tatgggacca 61 gggggagcat tttatacaac aggagagata acaggagata taagacaagc acattgtaac 121 cttagtata // | 0000000003888aff | Feb 20 1997 12:00AM | ||||
| 50 | H1DR16TAT 285 bp RNA VRL 23-MAY-1995 | 285 | NCBI gi: 818066 | atggagccagtagatcctagactagagccctgggagcatccaggaagtcagcctaggactgcttgtaccacttgctattgtaaaaagtgttgctttcattgtcaagtttgtttcataacaaaaggcttaggcatctcctatggcaggaagaagcggagacagcgacgaagaactcctcaaggcagtcagactcatcaagtttctctatcaaagcagtaagtagtacatgtaatgcaacctttacaaacattagcaatagtagcattagtagtagcaacaataata | LOCUS H1DR16TAT 285 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR16 tat gene, partial cds. ACCESSION U11141 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 285) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave, San Francisco, CA 94118, USA COMMENT NCBI gi: 818066 FEATURES Location/Qualifiers source 1..285 /organism="Human immunodeficiency virus type 1" /isolate="DR16" CDS 1..>216 /gene="tat" /note="NCBI gi: 818067" /codon_start=1 /translation="MEPVDPRLEPWEHPGSQPRTACTTCYCKKCCFHCQVCFITKGLG ISYGRKKRRQRRRTPQGSQTHQVSLSKQ" BASE COUNT 94 a 58 c 62 g 71 t ORIGIN 1 atggagccag tagatcctag actagagccc tgggagcatc caggaagtca gcctaggact 61 gcttgtacca cttgctattg taaaaagtgt tgctttcatt gtcaagtttg tttcataaca 121 aaaggcttag gcatctccta tggcaggaag aagcggagac agcgacgaag aactcctcaa 181 ggcagtcaga ctcatcaagt ttctctatca aagcagtaag tagtacatgt aatgcaacct 241 ttacaaacat tagcaatagt agcattagta gtagcaacaa taata // | 000000000388da6f | May 23 1995 12:00AM | |||
| 52 | D89967 129 bp DNA VRL 20-FEB-1997 | 129 | gtacaaattaattgtacaagacccaacaacaatacaagaaaaggtatacatataggaccaagaggagcattttatacaacaggagagataacaggagatataagacaagcacattgtaaccttagtata | LOCUS D89967 129 bp DNA VRL 20-FEB-1997 DEFINITION HIV-1 proviral DNA for envelope protein, partial cds, polymorphism. ACCESSION D89967 NID g1840414 KEYWORDS polymorphism; envelope protein; env. SOURCE Human immunodeficiency virus type 1 (isolate:I-2. 1-7c) proviral DNA. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate lentivirus group. REFERENCE 1 (bases 1 to 129) AUTHORS Honda,M. TITLE Direct Submission JOURNAL Submitted (19-DEC-1996) to the DDBJ/EMBL/GenBank databases. Mitsuo Honda, National Institute of Health, AIDS Research Center; Toyama 1-23-1, Shinjukuku, Tokyo 162, Japan (E-mail:mhonda@nih.go.jp, Tel:+81-03-5285-1111, Fax:+81-03-5285-1183) REFERENCE 2 (sites) AUTHORS Okamoto,Y., Shiosaki,K., Eda,Y., Tokiyoshi,S., Yamaguchi,Y., Gojobori,T., Hachimori,T., Yamazaki,S. and Honda,M. TITLE Father-to-mother-to-infant Transmission of HIV-1:Clonally Transmitted I solate of Infant Mutates More Rapidly Than That of The Mother and Rapidly Loses Reactivity with Neutralizing Antibody JOURNAL Microbiol. Immunol. (1997) In press FEATURES Location/Qualifiers source 1..129 /organism="Human immunodeficiency virus type 1" /proviral /isolate="I-2. 1-7c" CDS <1..>129 /gene="env" /note="C2-V3 region of env gene" /codon_start=1 /product="envelope protein" /db_xref="PID:g1840415" /translation="VQINCTRPNNNTRKGIHIGPRGAFYTTGEITGDIRQAHCNLSI" BASE COUNT 60 a 20 c 23 g 26 t ORIGIN 1 gtacaaatta attgtacaag acccaacaac aatacaagaa aaggtataca tataggacca 61 agaggagcat tttatacaac aggagagata acaggagata taagacaagc acattgtaac 121 cttagtata // | 0000000003888b02 | Feb 20 1997 12:00AM | ||||
| 53 | H1DR179TAT 285 bp RNA VRL 23-MAY-1995 | 285 | NCBI gi: 818070 | atggagccagtaggtcctagactagagccctgggagcatccaggaagtcagcctaggactgcttgtaccacttgctattgtaaaaagtgttgctttcattgccaagtttgtttcataacaaaaggcttaggcatctcctatggcaggaagaagcggagacagcgacgaagaactcctcaaggcagtcagactcatcaagtttctctatcaaagcagtaagtagtacatgtaatgcaacctttacaaatattagcaatagtagcattagtagtagcaacaataata | LOCUS H1DR179TAT 285 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR179 tat gene, partial cds. ACCESSION U11143 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 285) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave, San Francisco, CA 94118, USA COMMENT NCBI gi: 818070 FEATURES Location/Qualifiers source 1..285 /organism="Human immunodeficiency virus type 1" /isolate="DR179" CDS 1..>216 /gene="tat" /note="NCBI gi: 818071" /codon_start=1 /translation="MEPVGPRLEPWEHPGSQPRTACTTCYCKKCCFHCQVCFITKGLG ISYGRKKRRQRRRTPQGSQTHQVSLSKQ" BASE COUNT 93 a 58 c 63 g 71 t ORIGIN 1 atggagccag taggtcctag actagagccc tgggagcatc caggaagtca gcctaggact 61 gcttgtacca cttgctattg taaaaagtgt tgctttcatt gccaagtttg tttcataaca 121 aaaggcttag gcatctccta tggcaggaag aagcggagac agcgacgaag aactcctcaa 181 ggcagtcaga ctcatcaagt ttctctatca aagcagtaag tagtacatgt aatgcaacct 241 ttacaaatat tagcaatagt agcattagta gtagcaacaa taata // | 000000000388da75 | May 23 1995 12:00AM | |||
| 55 | D89968 129 bp DNA VRL 20-FEB-1997 | 129 | gtacaaattaattgtacaagacccaacaacaatacaagaaaaggtatacatataggaccaagaggagcattttatacaacaggagagataacaggagatataagacaagcacattgtaacctcagtata | LOCUS D89968 129 bp DNA VRL 20-FEB-1997 DEFINITION HIV-1 proviral DNA for envelope protein, partial cds, polymorphism. ACCESSION D89968 NID g1840416 KEYWORDS polymorphism; envelope protein; env. SOURCE Human immunodeficiency virus type 1 (isolate:I-2. 2-1c) proviral DNA. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate lentivirus group. REFERENCE 1 (bases 1 to 129) AUTHORS Honda,M. TITLE Direct Submission JOURNAL Submitted (19-DEC-1996) to the DDBJ/EMBL/GenBank databases. Mitsuo Honda, National Institute of Health, AIDS Research Center; Toyama 1-23-1, Shinjukuku, Tokyo 162, Japan (E-mail:mhonda@nih.go.jp, Tel:+81-03-5285-1111, Fax:+81-03-5285-1183) REFERENCE 2 (sites) AUTHORS Okamoto,Y., Shiosaki,K., Eda,Y., Tokiyoshi,S., Yamaguchi,Y., Gojobori,T., Hachimori,T., Yamazaki,S. and Honda,M. TITLE Father-to-mother-to-infant Transmission of HIV-1:Clonally Transmitted I solate of Infant Mutates More Rapidly Than That of The Mother and Rapidly Loses Reactivity with Neutralizing Antibody JOURNAL Microbiol. Immunol. (1997) In press FEATURES Location/Qualifiers source 1..129 /organism="Human immunodeficiency virus type 1" /proviral /isolate="I-2. 2-1c" CDS <1..>129 /gene="env" /note="C2-V3 region of env gene" /codon_start=1 /product="envelope protein" /db_xref="PID:g1840417" /translation="VQINCTRPNNNTRKGIHIGPRGAFYTTGEITGDIRQAHCNLSI" BASE COUNT 60 a 21 c 23 g 25 t ORIGIN 1 gtacaaatta attgtacaag acccaacaac aatacaagaa aaggtataca tataggacca 61 agaggagcat tttatacaac aggagagata acaggagata taagacaagc acattgtaac 121 ctcagtata // | 0000000003888b05 | Feb 20 1997 12:00AM | ||||
| 56 | H1DR17TAT 285 bp RNA VRL 23-MAY-1995 | 285 | NCBI gi: 818068 | atggagccagtagatcctagactagagccctggaagcatccaggaagtcagcctaggactgcttgtaccacttgctactgtaaacagtgttgctttcattgtcaagtttgtttcataacaaaaggcttaggcatctcctatggcaggaagaagcggagacagcgacgaagagctcatcaagacagtgagactcatcaagcttatctatcaaagcagtaagtagtacatgtaatgcaacctttacaaatattagcaatagtagcattagtagtagcaacaataata | LOCUS H1DR17TAT 285 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR17 tat gene, partial cds. ACCESSION U11142 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 285) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave, San Francisco, CA 94118, USA COMMENT NCBI gi: 818068 FEATURES Location/Qualifiers source 1..285 /organism="Human immunodeficiency virus type 1" /isolate="DR17" CDS 1..>216 /gene="tat" /note="NCBI gi: 818069" /codon_start=1 /translation="MEPVDPRLEPWKHPGSQPRTACTTCYCKQCCFHCQVCFITKGLG ISYGRKKRRQRRRAHQDSETHQAYLSKQ" BASE COUNT 96 a 57 c 62 g 70 t ORIGIN 1 atggagccag tagatcctag actagagccc tggaagcatc caggaagtca gcctaggact 61 gcttgtacca cttgctactg taaacagtgt tgctttcatt gtcaagtttg tttcataaca 121 aaaggcttag gcatctccta tggcaggaag aagcggagac agcgacgaag agctcatcaa 181 gacagtgaga ctcatcaagc ttatctatca aagcagtaag tagtacatgt aatgcaacct 241 ttacaaatat tagcaatagt agcattagta gtagcaacaa taata // | 000000000388da72 | May 23 1995 12:00AM | |||
| 58 | HCN1798 287 bp DNA VRL 06-MAY-1996 | 287 | Subtype B. Called subtype Bb in [1]. For sequences in the same study, see accession numbers U53278- U53317. V3-ID: B_CN.1798 This sequence is from a dried blood spot collected in 1992 from the spouse of an IV drug user in China. DNA was extracted from the blood spots and PCR amplified. The PCR products were directly sequenced. (Cassol96). GenBank accession number U53316 | gtatcaactcaactgctgttaaatggcagtttagcagaaaaggaggtagtaattagatctagcaatttcacggacaatactaaaatcataatagtacagctgaatgaatctgtagaaattaattgtacaagacccaacaacaatacaagaaaaagtatacatctaggacaagggcgagcatggtatacaacaggacaaataataggagatataagacaagcacattgtaaccttagtagcacaaaatggaataaaactttaaaacagatagctgaaaaattaagaga | LOCUS HCN1798 287 bp DNA VRL 06-MAY-1996 DEFINITION HIV-1 sample C17-0098 from Yunnan, China, env gene, partial cds. ACCESSION U53316 NID g1297170 KEYWORDS . SOURCE Human immunodeficiency virus type 1 (HIV-1), sample C17-0098; env gene extended by PCR amplification from DNA of dried blood spots. ORGANISM Human immunodeficiency virus type 1 Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Retroviridae; Lentivirinae. REFERENCE 1 (bases 1 to 287) AUTHORS Cassol,S., Weniger,B.G., Babu,P.G., Zheng,X, Htoon,M.T., Delaney,A.D., O'Shaughnessy,M.V. and Ou,C-Y. TITLE Detection of HIV type 1 env subtypes A, B, C, and E in Asia using dried blood spots: A new surveillance tool for molecular epidemiology JOURNAL AIDS Res. Hum. Retroviruses 12(15): 1435-1441 (1996) REFERENCE 2 (bases 1 to 287) AUTHORS Delaney,A.D. TITLE Direct Submission JOURNAL Submitted (02-APR-1996) Allen D. Delaney, Biomedical Research Centre, University of British Columbia, 2222 Health Sciences Mall, Vancouver, BC V6T 1Z3, Canada COMMENTS Subtype B. Called subtype Bb in [1]. For sequences in the same study, see accession numbers U53278- U53317. V3-ID: B_CN.1798 This sequence is from a dried blood spot collected in 1992 from the spouse of an IV drug user in China. DNA was extracted from the blood spots and PCR amplified. The PCR products were directly sequenced. (Cassol96). GenBank accession number U53316 FEATURES Location/Qualifiers source 1..287 /organism="Human immunodeficiency virus type 1" /proviral /clone="C17-0098" CDS <1..>287 /gene="env" /codon_start=1 /product="envelope glycoprotein" /db_xref="PID:g1297171" /translation="VSTQLLLNGSLAEKEVVIRSSNFTDNTKIIIVQLNESVEINCTR PNNNTRKSIHLGQGRAWYTTGQIIGDIRQAHCNLSSTKWNKTLKQIAEKLR" BASE COUNT 129 a 42 c 53 g 63 t ORIGIN 1 gtatcaactc aactgctgtt aaatggcagt ttagcagaaa aggaggtagt aattagatct 61 agcaatttca cggacaatac taaaatcata atagtacagc tgaatgaatc tgtagaaatt 121 aattgtacaa gacccaacaa caatacaaga aaaagtatac atctaggaca agggcgagca 181 tggtatacaa caggacaaat aataggagat ataagacaag cacattgtaa ccttagtagc 241 acaaaatgga ataaaacttt aaaacagata gctgaaaaat taagaga // | 00000000038918ef | May 6 1996 12:00AM | |||
| 59 | H1DR18TAT 285 bp RNA VRL 23-MAY-1995 | 285 | NCBI gi: 818072 | atggagccagtagatcctagactagagccctggaagcatccaggaagtcagcctaggactgcttgtaccacttgctactgtaaaaagtgttgctttcattgtcaagtttgtttcataacaaaaggcttaggcatctcctatggcaggaagaagcggagacaacgacgaagaactcctcaaggcagtcagactcatcaagtttctctatcaaagcagtaagtagtacatgtaatgcaacctttacaaatattagcaatagtagcattagtagtagcaacaataata | LOCUS H1DR18TAT 285 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR18 tat gene, partial cds. ACCESSION U11144 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 285) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave. San Francisco, CA 94118, USA COMMENT NCBI gi: 818072 FEATURES Location/Qualifiers source 1..285 /organism="Human immunodeficiency virus type 1" /isolate="DR18" CDS <1..>216 /gene="tat" /note="NCBI gi: 818073" /codon_start=1 /translation="MEPVDPRLEPWKHPGSQPRTACTTCYCKKCCFHCQVCFITKGLG ISYGRKKRRQRRRTPQGSQTHQVSLSKQ" BASE COUNT 96 a 58 c 60 g 71 t ORIGIN 1 atggagccag tagatcctag actagagccc tggaagcatc caggaagtca gcctaggact 61 gcttgtacca cttgctactg taaaaagtgt tgctttcatt gtcaagtttg tttcataaca 121 aaaggcttag gcatctccta tggcaggaag aagcggagac aacgacgaag aactcctcaa 181 ggcagtcaga ctcatcaagt ttctctatca aagcagtaag tagtacatgt aatgcaacct 241 ttacaaatat tagcaatagt agcattagta gtagcaacaa taata // | 000000000388da78 | May 23 1995 12:00AM | |||
| 61 | HID1701 287 bp DNA VRL 06-MAY-1996 | 287 | Subtype B. For sequences in the same study, see accession numbers U53278- U53317. V3-ID: B_ID.1701 This sequence is from a dried blood spot collected in 1992 from a male homosexual patient in Indonesia. DNA was extracted from the blood spots and PCR amplified. The PCR products were directly sequenced. (Cassol96). | gtatcaactcaactgctgttaaatggcagtctagcagaagaaaaggtagtagttagatctgaaaatttctcggacaatgctaaaaccataatagtacagctgaaagtacctgtacaaattaattgtacaagacccaacaacaatacaagcaaaagtatacatataggaccagggagagcattttatgcaacaggagccataataggggatataagaagagcacattgtaaccttagtaggacagaatggaataatactttataaaaggtagttgacaaattaggaga | LOCUS HID1701 287 bp DNA VRL 06-MAY-1996 DEFINITION HIV-1 sample I17-0001 from Indonesia, env gene, partial cds. ACCESSION U53317 NID g1297172 KEYWORDS . SOURCE Human immunodeficiency virus type 1 (HIV-1), sample I17-0001; env gene extended by PCR amplification from DNA of dried blood spots. ORGANISM Human immunodeficiency virus type 1 Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Retroviridae; Lentivirinae. REFERENCE 1 (bases 1 to 287) AUTHORS Cassol,S., Weniger,B.G., Babu,P.G., Zheng,X, Htoon,M.T., Delaney,A.D., O'Shaughnessy,M.V. and Ou,C-Y. TITLE Detection of HIV type 1 env subtypes A, B, C, and E in Asia using dried blood spots: A new surveillance tool for molecular epidemiology JOURNAL AIDS Res. Hum. Retroviruses 12(15): 1435-1441 (1996) REFERENCE 2 (bases 1 to 287) AUTHORS Delaney,A.D. TITLE Direct Submission JOURNAL Submitted (02-APR-1996) Allen D. Delaney, Biomedical Research Centre, University of British Columbia, 2222 Health Sciences Mall, Vancouver, BC V6T 1Z3, Canada COMMENTS Subtype B. For sequences in the same study, see accession numbers U53278- U53317. V3-ID: B_ID.1701 This sequence is from a dried blood spot collected in 1992 from a male homosexual patient in Indonesia. DNA was extracted from the blood spots and PCR amplified. The PCR products were directly sequenced. (Cassol96). FEATURES Location/Qualifiers source 1..287 /organism="Human immunodeficiency virus type 1" /proviral /clone="I17-0001" CDS <1..264 /gene="env" /codon_start=1 /product="envelope glycoprotein" /db_xref="PID:g1297173" /translation="VSTQLLLNGSLAEEKVVVRSENFSDNAKTIIVQLKVPVQINCTR PNNNTSKSIHIGPGRAFYATGAIIGDIRRAHCNLSRTEWNNTL" BASE COUNT 119 a 43 c 59 g 66 t ORIGIN 1 gtatcaactc aactgctgtt aaatggcagt ctagcagaag aaaaggtagt agttagatct 61 gaaaatttct cggacaatgc taaaaccata atagtacagc tgaaagtacc tgtacaaatt 121 aattgtacaa gacccaacaa caatacaagc aaaagtatac atataggacc agggagagca 181 ttttatgcaa caggagccat aataggggat ataagaagag cacattgtaa ccttagtagg 241 acagaatgga ataatacttt ataaaaggta gttgacaaat taggaga // | 00000000038918f3 | May 6 1996 12:00AM | |||
| 62 | H1DR1TAT 285 bp RNA VRL 23-MAY-1995 | 285 | NCBI gi: 818048 | atggagccagtagatcctagactagagccctggaagcatccaggaagtcagcctaggactgcttgtaccacttgctactgtaaacagtgttgctttcattgtcaagtttgtttcataacaaaaggcttaggcatctcctatggcaggaagaagcggagacagcgacgaagaactcctcaaggcagtcagactcatcaagtttctctatcaaagcagtaagtagtacatgtaatgcaacctttacaaatattagcaatagtagcattagtagtagcaacaataata | LOCUS H1DR1TAT 285 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR1 tat gene, partial cds. ACCESSION U11132 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 285) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave, San Francisco, CA 94118, USA COMMENT NCBI gi: 818048 FEATURES Location/Qualifiers source 1..285 /organism="Human immunodeficiency virus type 1" /isolate="DR1" CDS 1..>216 /gene="tat" /note="NCBI gi: 818049" /codon_start=1 /translation="MEPVDPRLEPWKHPGSQPRTACTTCYCKQCCFHCQVCFITKGLG ISYGRKKRRQRRRTPQGSQTHQVSLSKQ" BASE COUNT 94 a 59 c 61 g 71 t ORIGIN 1 atggagccag tagatcctag actagagccc tggaagcatc caggaagtca gcctaggact 61 gcttgtacca cttgctactg taaacagtgt tgctttcatt gtcaagtttg tttcataaca 121 aaaggcttag gcatctccta tggcaggaag aagcggagac agcgacgaag aactcctcaa 181 ggcagtcaga ctcatcaagt ttctctatca aagcagtaag tagtacatgt aatgcaacct 241 ttacaaatat tagcaatagt agcattagta gtagcaacaa taata // | idiotype.lanl.gov | 000000000388da53 | Jul 22 1999 10:20AM | May 23 1995 12:00AM | |
| 64 | H1DR20TAT 285 bp RNA VRL 23-MAY-1995 | 285 | NCBI gi: 818076 | atggagccagtagatcctagactagagccctggaagcatccaggaagtcagcctaggactgcttgtaccacttgctactgtaaacagtgttgctttcattgtcaagtttgtttcataacaaaaggcttaggcatctcctatggcaggaagaagcggagacagcgacgaagaactcctcaaggcagtcagactcatcaagtttctctatcaaagcagtaagtagtacatgtaatgcaacctttacaaatattagcaatagtagcattagtagtagcaacaataata | LOCUS H1DR20TAT 285 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR20 tat gene, partial cds. ACCESSION U11146 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 285) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave. San Francisco, CA 94118, USA COMMENT NCBI gi: 818076 FEATURES Location/Qualifiers source 1..285 /organism="Human immunodeficiency virus type 1" /isolate="DR20" CDS <1..>216 /gene="tat" /note="NCBI gi: 818077" /codon_start=1 /translation="MEPVDPRLEPWKHPGSQPRTACTTCYCKQCCFHCQVCFITKGLG ISYGRKKRRQRRRTPQGSQTHQVSLSKQ" BASE COUNT 94 a 59 c 61 g 71 t ORIGIN 1 atggagccag tagatcctag actagagccc tggaagcatc caggaagtca gcctaggact 61 gcttgtacca cttgctactg taaacagtgt tgctttcatt gtcaagtttg tttcataaca 121 aaaggcttag gcatctccta tggcaggaag aagcggagac agcgacgaag aactcctcaa 181 ggcagtcaga ctcatcaagt ttctctatca aagcagtaag tagtacatgt aatgcaacct 241 ttacaaatat tagcaatagt agcattagta gtagcaacaa taata // | 000000000388da7e | May 23 1995 12:00AM | |||
| 65 | HINCMCH1 287 bp DNA VRL 06-MAY-1996 | 287 | Subtype C. A set of sequences from a study on the detection of HIV-1 subtypes A,B,C, and E in India, Myammar, Thailand, China, and Indonesia involving dried blood spots collected in 1992. Envelope gene extended by PCR amplification from DNA of dried blood spots. The patients belonged to a wide variety of risk categories. GenBank accession numbers UU53286, U53291 (subtype A); U53304-U53308, U53310, U53311, U53314-U53317 ( subtype B); U53278-U53285, U53287-U53290, U53292-U53303 (subtype C); U53309, U53312, U53313 (subtype E) For sequences in the same study, see accession number U53278- U53317. | gtatcaacgcaactactgttaaatggtagcctagcagaagaagggataataattagatctgaaaatctgacagacaatgtcaaaacaataatagtacatcttaatgaatctgtagaaattgtgtgtacaagacccaacaataatacaagaaaaagtataaggataggaccaggacaaacattctatgcaacaggagaaataataggagacataaggcaagcacattgtaacattagtaaagataaatggattgagactttacaaagggtaggtaaaaaattagcaga | LOCUS HINCMCH1 287 bp DNA VRL 06-MAY-1996 DEFINITION HIV-1 sample CMCH1 from Vellore, South India, env gene, partial cds. ACCESSION U53278 NID g1297094 KEYWORDS . SOURCE Human immunodeficiency virus type 1 (HIV-1), sample CMCH1; env gene extended by PCR amplification from DNA of dried blood spots. ORGANISM Human immunodeficiency virus type 1 Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Retroviridae; Lentivirinae. REFERENCE 1 (bases 1 to 287) AUTHORS Cassol,S., Weniger,B.G., Babu,P.G., Zheng,X, Htoon,M.T., Delaney,A.D., O'Shaughnessy,M.V. and Ou,C-Y. TITLE Detection of HIV type 1 env subtypes A, B, C, and E in Asia using dried blood spots: A new surveillance tool for molecular epidemiology JOURNAL AIDS Res. Hum. Retroviruses 12(15): 1435-1441 (1996) REFERENCE 2 (bases 1 to 287) AUTHORS Delaney,A.D. TITLE Direct Submission JOURNAL Submitted (02-APR-1996) Allen D. Delaney, Biomedical Research Centre, University of British Columbia, 2222 Health Sciences Mall, Vancouver, BC V6T 1Z3, Canada COMMENTS Subtype C. A set of sequences from a study on the detection of HIV-1 subtypes A,B,C, and E in India, Myammar, Thailand, China, and Indonesia involving dried blood spots collected in 1992. Envelope gene extended by PCR amplification from DNA of dried blood spots. The patients belonged to a wide variety of risk categories. GenBank accession numbers UU53286, U53291 (subtype A); U53304-U53308, U53310, U53311, U53314-U53317 ( subtype B); U53278-U53285, U53287-U53290, U53292-U53303 (subtype C); U53309, U53312, U53313 (subtype E) For sequences in the same study, see accession number U53278- U53317. FEATURES Location/Qualifiers source 1..287 /organism="Human immunodeficiency virus type 1" /proviral /clone="CMCH1" CDS <1..>287 /gene="env" /codon_start=1 /product="envelope glycoprotein" /db_xref="PID:g1297095" /translation="VSTQLLLNGSLAEEGIIIRSENLTDNVKTIIVHLNESVEIVCTR PNNNTRKSIRIGPGQTFYATGEIIGDIRQAHCNISKDKWIETLQRVGKKLA" BASE COUNT 129 a 38 c 57 g 63 t ORIGIN 1 gtatcaacgc aactactgtt aaatggtagc ctagcagaag aagggataat aattagatct 61 gaaaatctga cagacaatgt caaaacaata atagtacatc ttaatgaatc tgtagaaatt 121 gtgtgtacaa gacccaacaa taatacaaga aaaagtataa ggataggacc aggacaaaca 181 ttctatgcaa caggagaaat aataggagac ataaggcaag cacattgtaa cattagtaaa 241 gataaatgga ttgagacttt acaaagggta ggtaaaaaat tagcaga // | 0000000003891880 | May 6 1996 12:00AM | |||
| 67 | H1DR21EV3 621 bp RNA VRL 23-MAY-1995 | 621 | NCBI gi: 818080 | ggtagtaattagatctgacaatttcacggacaatgctaaaaccataatagtacagctaaaagagtctgtagaaattaattgttcaagacccaacaacaatacaagaaagagtataaatataggaccagggagagcattttatacaacaggagaaataataggagatataagacaagcacattgtaaccttagtagagcaaaatgggagaacactttagaacagatagttaaaaaattaagagaagaatttaacaataaaacaatagtctttaaacaatcctcaggaggagacccagaaattgtaacgcacagttttaattgtggaggggaatttttctactgtaattcaacacaactgtttaatagtacttggaatgttacggaagggtcaaataccactgtagaaatggacacaatcacgctcccatgcagaataaaacaaattataaacatgtggcaggaagtaggaaaagcaatgtatgcccctcccatcagaggacaaattaaatgttcatcaaatattacagggctgctattaacaagagatggtggtaatagtgagaacaatgagactgaggtcttcagacctggaggaggagatatgagggacaattggagaag | LOCUS H1DR21EV3 621 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR21E envelope glycoprotein (env) V3 region, partial cds. ACCESSION U11148 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 621) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave. San Francisco, CA 94118, USA COMMENT NCBI gi: 818080 FEATURES Location/Qualifiers source 1..621 /organism="Human immunodeficiency virus type 1" /isolate="DR21E" CDS <1..>621 /gene="env" /note="NCBI gi: 818081" /codon_start=2 /product="envelope glycoprotein" /translation="VVIRSDNFTDNAKTIIVQLKESVEINCSRPNNNTRKSINIGPGR AFYTTGEIIGDIRQAHCNLSRAKWENTLEQIVKKLREEFNNKTIVFKQSSGGDPEIVT HSFNCGGEFFYCNSTQLFNSTWNVTEGSNTTVEMDTITLPCRIKQIINMWQEVGKAMY APPIRGQIKCSSNITGLLLTRDGGNSENNETEVFRPGGGDMRDNWR" BASE COUNT 254 a 92 c 132 g 143 t ORIGIN 1 ggtagtaatt agatctgaca atttcacgga caatgctaaa accataatag tacagctaaa 61 agagtctgta gaaattaatt gttcaagacc caacaacaat acaagaaaga gtataaatat 121 aggaccaggg agagcatttt atacaacagg agaaataata ggagatataa gacaagcaca 181 ttgtaacctt agtagagcaa aatgggagaa cactttagaa cagatagtta aaaaattaag 241 agaagaattt aacaataaaa caatagtctt taaacaatcc tcaggaggag acccagaaat 301 tgtaacgcac agttttaatt gtggagggga atttttctac tgtaattcaa cacaactgtt 361 taatagtact tggaatgtta cggaagggtc aaataccact gtagaaatgg acacaatcac 421 gctcccatgc agaataaaac aaattataaa catgtggcag gaagtaggaa aagcaatgta 481 tgcccctccc atcagaggac aaattaaatg ttcatcaaat attacagggc tgctattaac 541 aagagatggt ggtaatagtg agaacaatga gactgaggtc ttcagacctg gaggaggaga 601 tatgagggac aattggagaa g // | 000000000388da84 | May 23 1995 12:00AM | |||
| 68 | HINCMCH10 287 bp DNA VRL 06-MAY-1996 | 287 | Subtype C. For sequences in the same study, see accession numbers U53278- U53317. | gtatcaactcaattactgttaaatggtagcctagcagaagaagagataataattagatctgaaaatctgacaaacaatgtcaaaacaataatagtacatcttaatcaatctgtagaaattgtgtgtgcaagacccagcaataatacaagaaaaagtataaggataggaccaggacaaacattctatgcaacaggagacataataggagacataaggcaagcacattgtaacattagtgcagataaatggaatgaaactttacaaaaggtaagtaaaaaattagcaga | LOCUS HINCMCH10 287 bp DNA VRL 06-MAY-1996 DEFINITION HIV-1 sample CMCH10 from Vellore, South India, env ene, partial cds. ACCESSION U53287 NID g1297112 KEYWORDS . SOURCE Human immunodeficiency virus type 1 (HIV-1), sample CMCH10; env gene extended by PCR amplification from DNA of dried blood spots. ORGANISM Human immunodeficiency virus type 1 Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Retroviridae; Lentivirinae. REFERENCE 1 (bases 1 to 287) AUTHORS Cassol,S., Weniger,B.G., Babu,P.G., Zheng,X, Htoon,M.T., Delaney,A.D., O'Shaughnessy,M.V. and Ou,C-Y. TITLE Detection of HIV type 1 env subtypes A, B, C, and E in Asia using dried blood spots: A new surveillance tool for molecular epidemiology JOURNAL AIDS Res. Hum. Retroviruses 12(15): 1435-1441 (1996) REFERENCE 2 (bases 1 to 287) AUTHORS Delaney,A.D. TITLE Direct Submission JOURNAL Submitted (02-APR-1996) Allen D. Delaney, Biomedical Research Centre, University of British Columbia, 2222 Health Sciences Mall, Vancouver, BC V6T 1Z3, Canada COMMENTS Subtype C. For sequences in the same study, see accession numbers U53278- U53317. FEATURES Location/Qualifiers source 1..287 /organism="Human immunodeficiency virus type 1" /proviral /clone="CMCH10" CDS <1..>287 /gene="env" /codon_start=1 /product="envelope glycoprotein" /db_xref="PID:g1297113" /translation="VSTQLLLNGSLAEEEIIIRSENLTNNVKTIIVHLNQSVEIVCAR PSNNTRKSIRIGPGQTFYATGDIIGDIRQAHCNISADKWNETLQKVSKKLA" BASE COUNT 130 a 40 c 53 g 64 t ORIGIN 1 gtatcaactc aattactgtt aaatggtagc ctagcagaag aagagataat aattagatct 61 gaaaatctga caaacaatgt caaaacaata atagtacatc ttaatcaatc tgtagaaatt 121 gtgtgtgcaa gacccagcaa taatacaaga aaaagtataa ggataggacc aggacaaaca 181 ttctatgcaa caggagacat aataggagac ataaggcaag cacattgtaa cattagtgca 241 gataaatgga atgaaacttt acaaaaggta agtaaaaaat tagcaga // | 000000000389189b | May 6 1996 12:00AM | |||
| 70 | H1DR21TAT 285 bp RNA VRL 23-MAY-1995 | 285 | NCBI gi: 818078 | atggagccagtagatcctagactagagccctggaagcatccaggaagtcagcctaggactgcttgtaccacttgctactgtaaacagtgttgctttcattgtcaagtttgtttcataacaaaaggcttaggcatctcctatggcaggaagaagcggagacagcgacgaagagctcatcaagacagtgagactcatcaagcttatctatcaaagcagtaagtagtacatgtaatgcaacctttacaaatattagcaatagtagcattagtagtagcagcaataata | LOCUS H1DR21TAT 285 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR21 tat gene, partial cds. ACCESSION U11147 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 285) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave. San Francisco, CA 94118, USA COMMENT NCBI gi: 818078 FEATURES Location/Qualifiers source 1..285 /organism="Human immunodeficiency virus type 1" /isolate="DR21" CDS <1..>216 /gene="tat" /note="NCBI gi: 818079" /codon_start=1 /translation="MEPVDPRLEPWKHPGSQPRTACTTCYCKQCCFHCQVCFITKGLG ISYGRKKRRQRRRAHQDSETHQAYLSKQ" BASE COUNT 95 a 57 c 63 g 70 t ORIGIN 1 atggagccag tagatcctag actagagccc tggaagcatc caggaagtca gcctaggact 61 gcttgtacca cttgctactg taaacagtgt tgctttcatt gtcaagtttg tttcataaca 121 aaaggcttag gcatctccta tggcaggaag aagcggagac agcgacgaag agctcatcaa 181 gacagtgaga ctcatcaagc ttatctatca aagcagtaag tagtacatgt aatgcaacct 241 ttacaaatat tagcaatagt agcattagta gtagcagcaa taata // | 000000000388da81 | May 23 1995 12:00AM | |||
| 71 | HINCMCH11 287 bp DNA VRL 06-MAY-1996 | 287 | Subtype C. For sequences in the same study, see accession numbers U53278- U53317. | gtatcaactcaactactgttaaatggtagcctagcagaagaagggataataattagatctgaaaatctgacagacaatgtcaaaacaataatagtacatcttaatcaatctgtagaaattgtgtgtacaagacccaacaataatacaagaaaaagtataaggataggaccaggacaaacattctatgcaacaggagaaataataggagacataagacaagcacattgtaacattagtaaatctaactggactgaaactttacaaagggtaagtaaaaaattagcaga | LOCUS HINCMCH11 287 bp DNA VRL 06-MAY-1996 DEFINITION HIV-1 sample CMCH11 from Vellore, South India, env gene, partial cds. ACCESSION U53288 NID g1297114 KEYWORDS . SOURCE Human immunodeficiency virus type 1 (HIV-1), sample CMCH11; env gene extended by PCR amplification from DNA of dried blood spots. ORGANISM Human immunodeficiency virus type 1 Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Retroviridae; Lentivirinae. REFERENCE 1 (bases 1 to 287) AUTHORS Cassol,S., Weniger,B.G., Babu,P.G., Zheng,X, Htoon,M.T., Delaney,A.D., O'Shaughnessy,M.V. and Ou,C-Y. TITLE Detection of HIV type 1 env subtypes A, B, C, and E in Asia using dried blood spots: A new surveillance tool for molecular epidemiology JOURNAL AIDS Res. Hum. Retroviruses 12(15): 1435-1441 (1996) REFERENCE 2 (bases 1 to 287) AUTHORS Delaney,A.D. TITLE Direct Submission JOURNAL Submitted (02-APR-1996) Allen D. Delaney, Biomedical Research Centre, University of British Columbia, 2222 Health Sciences Mall, Vancouver, BC V6T 1Z3, Canada COMMENTS Subtype C. For sequences in the same study, see accession numbers U53278- U53317. FEATURES Location/Qualifiers source 1..287 /organism="Human immunodeficiency virus type 1" /proviral /clone="CMCH11" CDS <1..>287 /gene="env" /codon_start=1 /product="envelope glycoprotein" /db_xref="PID:g1297115" /translation="VSTQLLLNGSLAEEGIIIRSENLTDNVKTIIVHLNQSVEIVCTR PNNNTRKSIRIGPGQTFYATGEIIGDIRQAHCNISKSNWTETLQRVSKKLA" BASE COUNT 130 a 42 c 51 g 64 t ORIGIN 1 gtatcaactc aactactgtt aaatggtagc ctagcagaag aagggataat aattagatct 61 gaaaatctga cagacaatgt caaaacaata atagtacatc ttaatcaatc tgtagaaatt 121 gtgtgtacaa gacccaacaa taatacaaga aaaagtataa ggataggacc aggacaaaca 181 ttctatgcaa caggagaaat aataggagac ataagacaag cacattgtaa cattagtaaa 241 tctaactgga ctgaaacttt acaaagggta agtaaaaaat tagcaga // | 000000000389189e | May 6 1996 12:00AM | |||
| 73 | H1DR228V3 610 bp RNA VRL 23-MAY-1995 | 610 | NCBI gi: 818082 | ggtagcaattagatctgacaatttcacggacaatgctaaaaccataatagtacagctaaaagagtctgtagaaattaattgtacaagacccaacaacaatacaagaaagagtataaatataggaccagggagagcattttatacaacaggagaaataataggagatataagacaagcacattgtaaccttagtagagaaaaatgggaaaacactttagaacagatagctaaaaaattaagagaaaaatttgagaataaaacaatagtctttaatcaatcctcaggaggagacccagaaattgtaacgcacagttttaattgtggaggggaatttttctactgtaattcaacacaactgtttaatagtacttggaatgttacggaagggtcaaataaaactgtaggaaatggaacaatcacgctcccatgcagaataaaacaaattataaacatgtggcaggaagtaggaaaagcaatgtatgcccctcccatcagaggacaaattaaatgttcatcaaatattacaggcctgctactaacaagagatggtggtaatagtgagaacaacgagaccgaggtcttcagacctggaggaggagatatgagggac | LOCUS H1DR228V3 610 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR228 envelope glycoprotein (env) V3 region, partial cds. ACCESSION U11149 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 610) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave. San Francisco, CA 94118, USA COMMENT NCBI gi: 818082 FEATURES Location/Qualifiers source 1..610 /organism="Human immunodeficiency virus type 1" /isolate="DR228" CDS <1..>610 /gene="env" /note="NCBI gi: 818083" /codon_start=2 /product="envelope glycoprotein" /translation="VAIRSDNFTDNAKTIIVQLKESVEINCTRPNNNTRKSINIGPGR AFYTTGEIIGDIRQAHCNLSREKWENTLEQIAKKLREKFENKTIVFNQSSGGDPEIVT HSFNCGGEFFYCNSTQLFNSTWNVTEGSNKTVGNGTITLPCRIKQIINMWQEVGKAMY APPIRGQIKCSSNITGLLLTRDGGNSENNETEVFRPGGGDMRD" BASE COUNT 253 a 93 c 128 g 136 t ORIGIN 1 ggtagcaatt agatctgaca atttcacgga caatgctaaa accataatag tacagctaaa 61 agagtctgta gaaattaatt gtacaagacc caacaacaat acaagaaaga gtataaatat 121 aggaccaggg agagcatttt atacaacagg agaaataata ggagatataa gacaagcaca 181 ttgtaacctt agtagagaaa aatgggaaaa cactttagaa cagatagcta aaaaattaag 241 agaaaaattt gagaataaaa caatagtctt taatcaatcc tcaggaggag acccagaaat 301 tgtaacgcac agttttaatt gtggagggga atttttctac tgtaattcaa cacaactgtt 361 taatagtact tggaatgtta cggaagggtc aaataaaact gtaggaaatg gaacaatcac 421 gctcccatgc agaataaaac aaattataaa catgtggcag gaagtaggaa aagcaatgta 481 tgcccctccc atcagaggac aaattaaatg ttcatcaaat attacaggcc tgctactaac 541 aagagatggt ggtaatagtg agaacaacga gaccgaggtc ttcagacctg gaggaggaga 601 tatgagggac // | 000000000388da87 | May 23 1995 12:00AM | |||
| 74 | HINCMCH12 287 bp DNA VRL 06-MAY-1996 | 287 | Subtype C. For sequences in the same study, see accession numbers U53278- U53317. | gtatcaactcaactactgttaaatggtagcctagcagaaggagagataataattagatctgaaaatctgacaaacaatgccaaaacaataatagtacaacttaatcaatctgtagaaattgtgtgtacaagacccaacaataatacaagaaaaagtataaggataggaccaggacaaacattctatgcaacaggagacataataggagacataagacaagcacattgtaacattagtgaagacaaatggaataaaactttacaaagggtgagtgaaaaattagcaga | LOCUS HINCMCH12 287 bp DNA VRL 06-MAY-1996 DEFINITION HIV-1 sample CMCH12 from Vellore, South India, env gene, partial cds. ACCESSION U53289 NID g1297116 KEYWORDS . SOURCE Human immunodeficiency virus type 1 (HIV-1), sample CMCH12; env gene extended by PCR amplification from DNA of dried blood spots. ORGANISM Human immunodeficiency virus type 1 Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Retroviridae; Lentivirinae. REFERENCE 1 (bases 1 to 287) AUTHORS Cassol,S., Weniger,B.G., Babu,P.G., Zheng,X, Htoon,M.T., Delaney,A.D., O'Shaughnessy,M.V. and Ou,C-Y. TITLE Detection of HIV type 1 env subtypes A, B, C, and E in Asia using dried blood spots: A new surveillance tool for molecular epidemiology JOURNAL AIDS Res. Hum. Retroviruses 12(15): 1435-1441 (1996) REFERENCE 2 (bases 1 to 287) AUTHORS Delaney,A.D. TITLE Direct Submission JOURNAL Submitted (02-APR-1996) Allen D. Delaney, Biomedical Research Centre, University of British Columbia, 2222 Health Sciences Mall, Vancouver, BC V6T 1Z3, Canada COMMENTS Subtype C. For sequences in the same study, see accession numbers U53278- U53317. FEATURES Location/Qualifiers source 1..287 /organism="Human immunodeficiency virus type 1" /proviral /clone="CMCH12" CDS <1..>287 /gene="env" /codon_start=1 /product="envelope glycoprotein" /db_xref="PID:g1297117" /translation="VSTQLLLNGSLAEGEIIIRSENLTNNAKTIIVQLNQSVEIVCTR PNNNTRKSIRIGPGQTFYATGDIIGDIRQAHCNISEDKWNKTLQRVSEKLA" BASE COUNT 132 a 42 c 53 g 60 t ORIGIN 1 gtatcaactc aactactgtt aaatggtagc ctagcagaag gagagataat aattagatct 61 gaaaatctga caaacaatgc caaaacaata atagtacaac ttaatcaatc tgtagaaatt 121 gtgtgtacaa gacccaacaa taatacaaga aaaagtataa ggataggacc aggacaaaca 181 ttctatgcaa caggagacat aataggagac ataagacaag cacattgtaa cattagtgaa 241 gacaaatgga ataaaacttt acaaagggtg agtgaaaaat tagcaga // | 00000000038918a1 | May 6 1996 12:00AM | |||
| 76 | H1DR232V3 607 bp RNA VRL 23-MAY-1995 | 607 | NCBI gi: 818086 | agtaattagatctgacaatttcacggacaatgctaaaaccataatagtacagctaaaagagtctgtagaaattaattgtacaagacccagcaacaatacaagaaaaagtatacctataggaccaggcagagcattttatacaacaggagaaataataggagatataagacaagcacattgtaaccttagtagaacaaaatgggagaacactttaaaacagatagttgaaaaattaagagaaaaatttgagaataaaacaatagtctttaatcaatcctcaggaggagacccagaaattgtaacgcacagttttaattgtggaggggaatttttctactgtaattcaacacaactgtttaatagtacttggaatgttacggaagggtcaaataccactgtaggaaatggcacaatcacgctcccatgcagaataaaacaaattataaacatgtggcaggaagtaggaaaagcaatgtatgcccctcccatcagaggacaaattaaatgttcatcaaatattacagggctgctattaacaagagatggtggtaatagtgagaacaacgagactgaggtcttcagacctggaggaggagatatgagggac | LOCUS H1DR232V3 607 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR232 envelope glycoprotein (env) V3 region, partial cds. ACCESSION U11151 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 607) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave. San Francisco, CA 94118, USA COMMENT NCBI gi: 818086 FEATURES Location/Qualifiers source 1..607 /organism="Human immunodeficiency virus type 1" /isolate="DR232" CDS <1..>607 /gene="env" /note="NCBI gi: 818087" /codon_start=2 /product="envelope glycoprotein" /translation="VIRSDNFTDNAKTIIVQLKESVEINCTRPSNNTRKSIPIGPGRA FYTTGEIIGDIRQAHCNLSRTKWENTLKQIVEKLREKFENKTIVFNQSSGGDPEIVTH SFNCGGEFFYCNSTQLFNSTWNVTEGSNTTVGNGTITLPCRIKQIINMWQEVGKAMYA PPIRGQIKCSSNITGLLLTRDGGNSENNETEVFRPGGGDMRD" BASE COUNT 247 a 95 c 126 g 139 t ORIGIN 1 agtaattaga tctgacaatt tcacggacaa tgctaaaacc ataatagtac agctaaaaga 61 gtctgtagaa attaattgta caagacccag caacaataca agaaaaagta tacctatagg 121 accaggcaga gcattttata caacaggaga aataatagga gatataagac aagcacattg 181 taaccttagt agaacaaaat gggagaacac tttaaaacag atagttgaaa aattaagaga 241 aaaatttgag aataaaacaa tagtctttaa tcaatcctca ggaggagacc cagaaattgt 301 aacgcacagt tttaattgtg gaggggaatt tttctactgt aattcaacac aactgtttaa 361 tagtacttgg aatgttacgg aagggtcaaa taccactgta ggaaatggca caatcacgct 421 cccatgcaga ataaaacaaa ttataaacat gtggcaggaa gtaggaaaag caatgtatgc 481 ccctcccatc agaggacaaa ttaaatgttc atcaaatatt acagggctgc tattaacaag 541 agatggtggt aatagtgaga acaacgagac tgaggtcttc agacctggag gaggagatat 601 gagggac // | 000000000388da8d | May 23 1995 12:00AM | |||
| 77 | HINCMCH13 287 bp DNA VRL 06-MAY-1996 | 287 | Subtype C. For sequences in the same study, see accession numbers U53278- U53317. | gtatcaactcaactactgttaaatggtagcctagcagaagaagagataataattagatctgaaaatctgacaaacaatgtcaaaacaataatagtacatcttaatcaacctgtagaaattgtgtgtataagacccagcaataatacaagaaaaagtataaggataggaccaggacaaacattctatgcaacaggagacataataggagacataagacaagcatattgtaccattaataaaactgactggaataaaactttacaaggggtaggtaaaaaattagcaga | LOCUS HINCMCH13 287 bp DNA VRL 06-MAY-1996 DEFINITION HIV-1 sample CMCH13 from Vellore, South India, env gene, partial cds. ACCESSION U53290 NID g1297118 KEYWORDS . SOURCE Human immunodeficiency virus type 1 (HIV-1), sample CMCH13; env gene extended by PCR amplification from DNA of dried blood spots. ORGANISM Human immunodeficiency virus type 1 Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Retroviridae; Lentivirinae. REFERENCE 1 (bases 1 to 287) AUTHORS Cassol,S., Weniger,B.G., Babu,P.G., Zheng,X, Htoon,M.T., Delaney,A.D., O'Shaughnessy,M.V. and Ou,C-Y. TITLE Detection of HIV type 1 env subtypes A, B, C, and E in Asia using dried blood spots: A new surveillance tool for molecular epidemiology JOURNAL AIDS Res. Hum. Retroviruses 12(15): 1435-1441 (1996) REFERENCE 2 (bases 1 to 287) AUTHORS Delaney,A.D. TITLE Direct Submission JOURNAL Submitted (02-APR-1996) Allen D. Delaney, Biomedical Research Centre, University of British Columbia, 2222 Health Sciences Mall, Vancouver, BC V6T 1Z3, Canada COMMENTS Subtype C. For sequences in the same study, see accession numbers U53278- U53317. FEATURES Location/Qualifiers source 1..287 /organism="Human immunodeficiency virus type 1" /proviral /clone="CMCH13" CDS <1..>287 /gene="env" /codon_start=1 /product="envelope glycoprotein" /db_xref="PID:g1297119" /translation="VSTQLLLNGSLAEEEIIIRSENLTNNVKTIIVHLNQPVEIVCIR PSNNTRKSIRIGPGQTFYATGDIIGDIRQAYCTINKTDWNKTLQGVGKKLA" BASE COUNT 130 a 42 c 51 g 64 t ORIGIN 1 gtatcaactc aactactgtt aaatggtagc ctagcagaag aagagataat aattagatct 61 gaaaatctga caaacaatgt caaaacaata atagtacatc ttaatcaacc tgtagaaatt 121 gtgtgtataa gacccagcaa taatacaaga aaaagtataa ggataggacc aggacaaaca 181 ttctatgcaa caggagacat aataggagac ataagacaag catattgtac cattaataaa 241 actgactgga ataaaacttt acaaggggta ggtaaaaaat tagcaga // | 00000000038918a4 | May 6 1996 12:00AM | |||
| 79 | H1DR23V3 629 bp RNA VRL 23-MAY-1995 | 629 | NCBI gi: 818084 | ggtagtaattagatctgccaatttcacggacaatgctaaaaccataatagtacagctaaaagagtctgtagaaattaattgtataagacccaacaacaatacaagaaagagtataaatataggaccaggcagagcattttatacaacaggagaaataataggagatataagacaagcacattgtaaccttagtagagaaaaatgggagaacactttagaacagatagttagaaaattaagagaagaatttaagaataaaacaatagtctttaatcaatcctcaggaggagacccagaaattgtaacgcacagttttaattgtggaggggaatttttctactgtaattcaacacaactgtttaatagtacttggaatgttacgaaagggtcaagtaccactgtaggaagtgacacaatcacgctcccatgcagaataaaacaaattataaacatgtggcaggaagtaggaaaagcaatgtatgcccctcccatcagaggacaaattaaatgttcatcaaatattacagggctgctattaacaagagatggtggtaatagtgagaacaacgagactgaggtcttcagacctggaggaggagatatgagggacaattggagaagtagagtag | LOCUS H1DR23V3 629 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR23 envelope glycoprotein (env) V3 region, partial cds. ACCESSION U11150 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 629) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave. San Francisco, CA 94118, USA COMMENT NCBI gi: 818084 FEATURES Location/Qualifiers source 1..629 /organism="Human immunodeficiency virus type 1" /isolate="DR23" CDS <1..>629 /gene="env" /note="NCBI gi: 818085" /codon_start=2 /product="envelope glycoprotein" /translation="VVIRSANFTDNAKTIIVQLKESVEINCIRPNNNTRKSINIGPGR AFYTTGEIIGDIRQAHCNLSREKWENTLEQIVRKLREEFKNKTIVFNQSSGGDPEIVT HSFNCGGEFFYCNSTQLFNSTWNVTKGSSTTVGSDTITLPCRIKQIINMWQEVGKAMY APPIRGQIKCSSNITGLLLTRDGGNSENNETEVFRPGGGDMRDNWRSRV" BASE COUNT 255 a 92 c 137 g 145 t ORIGIN 1 ggtagtaatt agatctgcca atttcacgga caatgctaaa accataatag tacagctaaa 61 agagtctgta gaaattaatt gtataagacc caacaacaat acaagaaaga gtataaatat 121 aggaccaggc agagcatttt atacaacagg agaaataata ggagatataa gacaagcaca 181 ttgtaacctt agtagagaaa aatgggagaa cactttagaa cagatagtta gaaaattaag 241 agaagaattt aagaataaaa caatagtctt taatcaatcc tcaggaggag acccagaaat 301 tgtaacgcac agttttaatt gtggagggga atttttctac tgtaattcaa cacaactgtt 361 taatagtact tggaatgtta cgaaagggtc aagtaccact gtaggaagtg acacaatcac 421 gctcccatgc agaataaaac aaattataaa catgtggcag gaagtaggaa aagcaatgta 481 tgcccctccc atcagaggac aaattaaatg ttcatcaaat attacagggc tgctattaac 541 aagagatggt ggtaatagtg agaacaacga gactgaggtc ttcagacctg gaggaggaga 601 tatgagggac aattggagaa gtagagtag // | 000000000388da8a | May 23 1995 12:00AM | |||
| 80 | HINCMCH14 287 bp DNA VRL 06-MAY-1996 | 287 | Subtype C. For sequences in the same study, see accession numbers U53278- U53317. U53317. V3-ID: A_IN1.ID These two entries are from 1992 dried blood spot samples from Vellore near Madras, in Tamil Nadu state in southern India. DNA was extracted from the blood spots and PCR amplified. The PCR products were directly sequenced. Samples came from previously identified HIV seropositive homosexual men. Other samples from the same region were all sub (see C_IN4.). (Cassol96). GenBank accession numbers U53286 and U53291. | gtatcaactcaactgctgttaaatggcagtctagcagaacaacaggtaagaattagatctgaaaatatctcagacaatgctaaaaccataatagtacaacttagtgagcctgtaacaattaattgtaccagacctaacaacaatacaagaaaaagtatacatataggaccaggacaagcattctatgcaacaggtgacataataggggatataagacaagcacattgcaatgtcagtggaacaaaatggaataaaactttacaagatgtagctacacaattaagaga | LOCUS HINCMCH14 287 bp DNA VRL 06-MAY-1996 DEFINITION HIV-1 sample CMCH14 from Vellore, South India, env gene, partial cds. ACCESSION U53291 NID g1297120 KEYWORDS . SOURCE Human immunodeficiency virus type 1 (HIV-1), sample CMCH14; env gene extended by PCR amplification from DNA of dried blood spots. ORGANISM Human immunodeficiency virus type 1 Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Retroviridae; Lentivirinae. REFERENCE 1 (bases 1 to 287) AUTHORS Cassol,S., Weniger,B.G., Babu,P.G., Zheng,X, Htoon,M.T., Delaney,A.D., O'Shaughnessy,M.V. and Ou,C-Y. TITLE Detection of HIV type 1 env subtypes A, B, C, and E in Asia using dried blood spots: A new surveillance tool for molecular epidemiology JOURNAL AIDS Res. Hum. Retroviruses 12(15): 1435-1441 (1996) REFERENCE 2 (bases 1 to 287) AUTHORS Delaney,A.D. TITLE Direct Submission JOURNAL Submitted (02-APR-1996) Allen D. Delaney, Biomedical Research Centre, University of British Columbia, 2222 Health Sciences Mall, Vancouver, BC V6T 1Z3, Canada COMMENTS Subtype C. For sequences in the same study, see accession numbers U53278- U53317. U53317. V3-ID: A_IN1.ID These two entries are from 1992 dried blood spot samples from Vellore near Madras, in Tamil Nadu state in southern India. DNA was extracted from the blood spots and PCR amplified. The PCR products were directly sequenced. Samples came from previously identified HIV seropositive homosexual men. Other samples from the same region were all sub (see C_IN4.). (Cassol96). GenBank accession numbers U53286 and U53291. FEATURES Location/Qualifiers source 1..287 /organism="Human immunodeficiency virus type 1" /proviral /clone="CMCH14" CDS <1..>287 /gene="env" /codon_start=1 /product="envelope glycoprotein" /db_xref="PID:g1297121" /translation="VSTQLLLNGSLAEQQVRIRSENISDNAKTIIVQLSEPVTINCTR PNNNTRKSIHIGPGQAFYATGDIIGDIRQAHCNVSGTKWNKTLQDVATQLR" BASE COUNT 124 a 49 c 51 g 63 t ORIGIN 1 gtatcaactc aactgctgtt aaatggcagt ctagcagaac aacaggtaag aattagatct 61 gaaaatatct cagacaatgc taaaaccata atagtacaac ttagtgagcc tgtaacaatt 121 aattgtacca gacctaacaa caatacaaga aaaagtatac atataggacc aggacaagca 181 ttctatgcaa caggtgacat aataggggat ataagacaag cacattgcaa tgtcagtgga 241 acaaaatgga ataaaacttt acaagatgta gctacacaat taagaga // | 00000000038918a7 | May 6 1996 12:00AM | |||
| 82 | H1DR240V3 610 bp RNA VRL 23-MAY-1995 | 610 | NCBI gi: 818088 | ggtagtaattagatctgacaatttcacggacaatgctaaaaccataatagtacagctaaaagagtctgtagaaattaattgtacaagacccagcaacaatacaagaaaaagtatacctataggaccaggcagagcatcttatacaacaggagaaataataggagatataagacaagcacattgtaaccttagtagaacaaaatgggagaacactttaaaacagatagttgaaaaattaagagaaaaatttgagaataaaacaatagtctttaatcaatcctcaggaggagacccagaaattgtaacgcacagttttaattgtggaggggaatttttctactgtaattcaacacaactgtttaatagtacttggaatgttacggaagggtcaaataaaactgtagaaaatggaacaatcacgctcccatgcagaataaaacaaattataaacatgtggcaggaagtaggaaaagcaatgtacgcccctcccatcagaggacaaattaaatgttcatcaaatattacagggctgctattaacaagagatggtggtaatagtgagaacaacgagactgaggtcttcagacctggaggaggagatatgagggac | LOCUS H1DR240V3 610 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR240 envelope glycoprotein (env) V3 region, partial cds. ACCESSION U11152 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 610) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave. San Francisco, CA 94118, USA COMMENT NCBI gi: 818088 FEATURES Location/Qualifiers source 1..610 /organism="Human immunodeficiency virus type 1" /isolate="DR240" CDS <1..>610 /gene="env" /note="NCBI gi: 818089" /codon_start=2 /product="envelope glycoprotein" /translation="VVIRSDNFTDNAKTIIVQLKESVEINCTRPSNNTRKSIPIGPGR ASYTTGEIIGDIRQAHCNLSRTKWENTLKQIVEKLREKFENKTIVFNQSSGGDPEIVT HSFNCGGEFFYCNSTQLFNSTWNVTEGSNKTVENGTITLPCRIKQIINMWQEVGKAMY APPIRGQIKCSSNITGLLLTRDGGNSENNETEVFRPGGGDMRD" BASE COUNT 251 a 94 c 127 g 138 t ORIGIN 1 ggtagtaatt agatctgaca atttcacgga caatgctaaa accataatag tacagctaaa 61 agagtctgta gaaattaatt gtacaagacc cagcaacaat acaagaaaaa gtatacctat 121 aggaccaggc agagcatctt atacaacagg agaaataata ggagatataa gacaagcaca 181 ttgtaacctt agtagaacaa aatgggagaa cactttaaaa cagatagttg aaaaattaag 241 agaaaaattt gagaataaaa caatagtctt taatcaatcc tcaggaggag acccagaaat 301 tgtaacgcac agttttaatt gtggagggga atttttctac tgtaattcaa cacaactgtt 361 taatagtact tggaatgtta cggaagggtc aaataaaact gtagaaaatg gaacaatcac 421 gctcccatgc agaataaaac aaattataaa catgtggcag gaagtaggaa aagcaatgta 481 cgcccctccc atcagaggac aaattaaatg ttcatcaaat attacagggc tgctattaac 541 aagagatggt ggtaatagtg agaacaacga gactgaggtc ttcagacctg gaggaggaga 601 tatgagggac // | 000000000388da90 | May 23 1995 12:00AM | |||
| 83 | HINCMCH15 281 bp DNA VRL 06-MAY-1996 | 281 | Subtype C. For sequences in the same study, see accession numbers U53278- U53317. | gtatcaactcaactactgttaaatggtagcctagcagaaggagagataataattagatctgaaaatctgacaaacaatgtcaaaacaataatagtacatcttaataaatctatagaaattgtgtgtacaagacccaacaataatacaagaaaaagtataaggataggaccaggacaaacattctatgcaacaggagacataataggagacataagacaagcacattgtaacattacaggctggaatgaaactttacaaagagtaggtaaaaaattagcaga | LOCUS HINCMCH15 281 bp DNA VRL 06-MAY-1996 DEFINITION HIV-1 sample CMCH15 from Vellore, South India, env gene, partial cds. ACCESSION U53292 NID g1297122 KEYWORDS . SOURCE Human immunodeficiency virus type 1 (HIV-1), sample CMCH15; env gene extended by PCR amplification from DNA of dried blood spots. ORGANISM Human immunodeficiency virus type 1 Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Retroviridae; Lentivirinae. REFERENCE 1 (bases 1 to 281) AUTHORS Cassol,S., Weniger,B.G., Babu,P.G., Zheng,X, Htoon,M.T., Delaney,A.D., O'Shaughnessy,M.V. and Ou,C-Y. TITLE Detection of HIV type 1 env subtypes A, B, C, and E in Asia using dried blood spots: A new surveillance tool for molecular epidemiology JOURNAL AIDS Res. Hum. Retroviruses 12(15): 1435-1441 (1996) REFERENCE 2 (bases 1 to 281) AUTHORS Delaney,A.D. TITLE Direct Submission JOURNAL Submitted (02-APR-1996) Allen D. Delaney, Biomedical Research Centre, University of British Columbia, 2222 Health Sciences Mall, Vancouver, BC V6T 1Z3, Canada COMMENTS Subtype C. For sequences in the same study, see accession numbers U53278- U53317. FEATURES Location/Qualifiers source 1..281 /organism="Human immunodeficiency virus type 1" /proviral /clone="CMCH15" CDS <1..>281 /gene="env" /codon_start=1 /product="envelope glycoprotein" /db_xref="PID:g1297123" /translation="VSTQLLLNGSLAEGEIIIRSENLTNNVKTIIVHLNKSIEIVCTR PNNNTRKSIRIGPGQTFYATGDIIGDIRQAHCNITGWNETLQRVGKKLA" BASE COUNT 129 a 41 c 50 g 61 t ORIGIN 1 gtatcaactc aactactgtt aaatggtagc ctagcagaag gagagataat aattagatct 61 gaaaatctga caaacaatgt caaaacaata atagtacatc ttaataaatc tatagaaatt 121 gtgtgtacaa gacccaacaa taatacaaga aaaagtataa ggataggacc aggacaaaca 181 ttctatgcaa caggagacat aataggagac ataagacaag cacattgtaa cattacaggc 241 tggaatgaaa ctttacaaag agtaggtaaa aaattagcag a // | 00000000038918aa | May 6 1996 12:00AM | |||
| 85 | H1DR241V3 610 bp RNA VRL 23-MAY-1995 | 610 | NCBI gi: 818090 | ggtagtaattagatctgacaatttcacggacaatgctaaaaccataatagtacagctaaaagagtctgtagaaattaattgtacaagacccaacaacaatacaagaaagagtataaatataggaccagggagagcattttatacaacaggagaaataataggagatataagacaagcacattgtaaccttagtagagcaaaatgggaaaacactttagaacagatagctaaaaaattaagagaaaaatttgagaataaaacaatagtctttaatcaatcctcaggaggagacccagaaattgtaacgcacagttttaattgtggaggggaatttttctactgtaattcaacacaactgtttaatagtacttggaatgttacggaagggtcaaataaaactgtaggaaatggaacaatcacgctcccatgcagaataaaacaaattataaacatgtggcaggaagtaggaaaagcaatgtatgcccctcccatcagaggacaaattaaatgttcatcaaatattacaggcctgctactaacaagagatggtggtaatagtgagaacaacgagaccgaggtcttcagacctggaggaggagatatgagggac | LOCUS H1DR241V3 610 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR241 envelope glycoprotein (env) V3 region, partial cds. ACCESSION U11153 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 610) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave. San Francisco, CA 94118, USA COMMENT NCBI gi: 818090 FEATURES Location/Qualifiers source 1..610 /organism="Human immunodeficiency virus type 1" /isolate="DR241" CDS <1..>610 /gene="env" /note="NCBI gi: 818091" /codon_start=2 /product="envelope glycoprotein" /translation="VVIRSDNFTDNAKTIIVQLKESVEINCTRPNNNTRKSINIGPGR AFYTTGEIIGDIRQAHCNLSRAKWENTLEQIAKKLREKFENKTIVFNQSSGGDPEIVT HSFNCGGEFFYCNSTQLFNSTWNVTEGSNKTVGNGTITLPCRIKQIINMWQEVGKAMY APPIRGQIKCSSNITGLLLTRDGGNSENNETEVFRPGGGDMRD" BASE COUNT 252 a 93 c 128 g 137 t ORIGIN 1 ggtagtaatt agatctgaca atttcacgga caatgctaaa accataatag tacagctaaa 61 agagtctgta gaaattaatt gtacaagacc caacaacaat acaagaaaga gtataaatat 121 aggaccaggg agagcatttt atacaacagg agaaataata ggagatataa gacaagcaca 181 ttgtaacctt agtagagcaa aatgggaaaa cactttagaa cagatagcta aaaaattaag 241 agaaaaattt gagaataaaa caatagtctt taatcaatcc tcaggaggag acccagaaat 301 tgtaacgcac agttttaatt gtggagggga atttttctac tgtaattcaa cacaactgtt 361 taatagtact tggaatgtta cggaagggtc aaataaaact gtaggaaatg gaacaatcac 421 gctcccatgc agaataaaac aaattataaa catgtggcag gaagtaggaa aagcaatgta 481 tgcccctccc atcagaggac aaattaaatg ttcatcaaat attacaggcc tgctactaac 541 aagagatggt ggtaatagtg agaacaacga gaccgaggtc ttcagacctg gaggaggaga 601 tatgagggac // | 000000000388da93 | May 23 1995 12:00AM | |||
| 86 | HIVU53293 287 bp DNA linear VRL 18-OCT-1996 | 287 | Subtype C. For sequences in the same study, see accession numbers U53278- U53317. On Oct 18, 1996 this sequence version replaced gi:1297124 in GenBank. HIV-db sequence updated Jan 2006. | gtatcaactcaactactgttaaatggtagcctagcagaaggagagataataattagatctgaaaatatgacaaacaatgtcaaaacaataatagtacatcttaatcaatctgtagaaattgtgtgtacaagacccaacaataatacaagaaaaagtataaggataggaccaggacaaacattctatgcaacaggagacataataggagacataagacaagcacattgtaacattagtaaagagagatggaatgaaactttacaaagggtaggtaaaaaactagcaga | LOCUS HIVU53293 287 bp DNA linear VRL 18-OCT-1996 DEFINITION Human immunodeficiency virus type 1, Vellore, South India, envelope glycoprotein (env) gene, partial cds. subtype C. ACCESSION U53293 VERSION U53293.1 GI:1620572 KEYWORDS . SOURCE Human immunodeficiency virus 1 (HIV-1) ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus group. REFERENCE 1 (bases 1 to 287) AUTHORS Cassol,S., Weniger,B.G., Babu,P.G., Salminen,M.O., Zheng,X., Htoon,M.T., Delaney,A., O'Shaughnessy,M. and Ou,C.Y. TITLE Detection of HIV type 1 env subtypes A, B, C, and E in Asia using dried blood spots: a new surveillance tool for molecular epidemiology JOURNAL AIDS Res. Hum. Retroviruses 12 (15), 1435-1441 (1996) PUBMED 8893051 REFERENCE 2 (bases 1 to 287) AUTHORS Delaney,A.D. TITLE Direct Submission JOURNAL Submitted (02-APR-1996) Allen D. Delaney, Biomedical Research Centre, University of British Columbia, 2222 Health Sciences Mall, Vancouver, BC V6T 1Z3, Canada COMMENT On Oct 18, 1996 this sequence version replaced gi:1297124. FEATURES Location/Qualifiers source 1..287 /organism=""Human immunodeficiency virus 1"" /proviral /mol_type=""genomic DNA"" /isolate=""CMCH19 (dried blood spot)"" /db_xref=""taxon:11676"" gene 1..287 /gene=""env"" CDS <1..>287 /gene=""env"" /codon_start=1 /product=""envelope glycoprotein"" /protein_id=""AAC55893.1"" /db_xref=""GI:1297125"" /translation=""VSTQLLLNGSLAEGEIIIRSENMTNNVKTIIVHLNQSVEIVCTR PNNNTRKSIRIGPGQTFYATGDIIGDIRQAHCNISKERWNETLQRVGKKLA"" ORIGIN 1 gtatcaactc aactactgtt aaatggtagc ctagcagaag gagagataat aattagatct 61 gaaaatatga caaacaatgt caaaacaata atagtacatc ttaatcaatc tgtagaaatt 121 gtgtgtacaa gacccaacaa taatacaaga aaaagtataa ggataggacc aggacaaaca 181 ttctatgcaa caggagacat aataggagac ataagacaag cacattgtaa cattagtaaa 241 gagagatgga atgaaacttt acaaagggta ggtaaaaaac tagcaga // | 128.165.24.130 | 00000000038918ad | Jan 25 2006 11:06AM | Oct 18 1996 12:00AM | |
| 87 | H147621GAG 233 bp DNA VRL 08-JUN-1995 | 233 | NCBI gi: 852509 | taccatgctaaacacagtgggggggcatcaagcagctatgcaaatgctaaaggatacaatcaatgaggaagctgcagaatgggacaggatacatccacaacaagcagggcctcttccaccaggccagttaagagaaccaagaggaagtgatatagcaggaactactagtaccctgcaggaacaaataagatggatgaccagtaccccacctatcccagtgggagacatttata | LOCUS H147621GAG 233 bp DNA VRL 08-JUN-1995 DEFINITION Human immunodeficiency virus type 1 isolate 94-47621 gag protein (gag) gene, partial cds. ACCESSION U26303 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 233) AUTHORS Arnold,C., Barlow,K.L., Kaye,S., Loveday,C., Balfe,P. and Clewley,J.P. TITLE HIV-1 sequence subtype G transmission from mother to infant: failure of variant sequence species to amplify in the Roche Amplicor test JOURNAL AIDS Res Hum Retroviruses 11: 999-1001(1995) REFERENCE 2 (bases 1 to 233) AUTHORS Clewley,J.P. TITLE Direct Submission JOURNAL Submitted (03-MAY-1995) Jonathan P. Clewley, Virus Reference Division, Central Public Health Laboratory, 61 Colindale Avenue, London, NW9 5HT, United Kingdom COMMENT NCBI gi: 852509 FEATURES Location/Qualifiers source 1..233 /organism="Human immunodeficiency virus type 1" /proviral /isolate="94-47621" /note="94-47621 is the mother of 94-47622" CDS <1..>233 /gene="gag" /note="NCBI gi: 852510" /codon_start=2 /product="gag protein" BASE COUNT 84 a 53 c 57 g 39 t ORIGIN 1 taccatgcta aacacagtgg gggggcatca agcagctatg caaatgctaa aggatacaat 61 caatgaggaa gctgcagaat gggacaggat acatccacaa caagcagggc ctcttccacc 121 aggccagtta agagaaccaa gaggaagtga tatagcagga actactagta ccctgcagga 181 acaaataaga tggatgacca gtaccccacc tatcccagtg ggagacattt ata // | 000000000388f965 | Jun 8 1995 12:00AM | |||
| 88 | H1DR250V3 607 bp RNA VRL 23-MAY-1995 | 607 | NCBI gi: 818092 | agtaattagatctgacaatttcacagacaatgctaaaaccataatagtacagctaaaagagtctgtagaaattaattgtacaagacccagcaacaatacaagaaagagtatacatataggaccagggagagcattttatacaacaggagaaataataggagatataagacaagcacattgtaaccttagtagagcaaaatgggagaacactttaaaccagatagttagaaaattaagagaagaatttaagaataaaacaatagtctttaatcaatcctcaggaggagacccagaaattgtaacgcacagttttaattgtggaggggaatttttctattgtaattcaacacaactgtttaatagtacttggaatgttacggaagggtcaaataaaactgtaggaaatggcacaatcacgctcccatgcagaataaaacaaattataaacctgtggcaggaagtaggaaaagcaatgtatgcccctcccatcagaggacaaattaaatgttcatcaaatattacagggctgctattaacaagagatggtggtaatagtgagaacaacgagactgaggtcttcagacctggaggaggagatatgagggac | LOCUS H1DR250V3 607 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR250 envelope glycoprotein (env) V3 region, partial cds. ACCESSION U11154 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 607) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave. San Francisco, CA 94118, USA COMMENT NCBI gi: 818092 FEATURES Location/Qualifiers source 1..607 /organism="Human immunodeficiency virus type 1" /isolate="DR250" CDS <1..>607 /gene="env" /note="NCBI gi: 818093" /codon_start=2 /product="envelope glycoprotein" /translation="VIRSDNFTDNAKTIIVQLKESVEINCTRPSNNTRKSIHIGPGRA FYTTGEIIGDIRQAHCNLSRAKWENTLNQIVRKLREEFKNKTIVFNQSSGGDPEIVTH SFNCGGEFFYCNSTQLFNSTWNVTEGSNKTVGNGTITLPCRIKQIINLWQEVGKAMYA PPIRGQIKCSSNITGLLLTRDGGNSENNETEVFRPGGGDMRD" BASE COUNT 247 a 92 c 128 g 140 t ORIGIN 1 agtaattaga tctgacaatt tcacagacaa tgctaaaacc ataatagtac agctaaaaga 61 gtctgtagaa attaattgta caagacccag caacaataca agaaagagta tacatatagg 121 accagggaga gcattttata caacaggaga aataatagga gatataagac aagcacattg 181 taaccttagt agagcaaaat gggagaacac tttaaaccag atagttagaa aattaagaga 241 agaatttaag aataaaacaa tagtctttaa tcaatcctca ggaggagacc cagaaattgt 301 aacgcacagt tttaattgtg gaggggaatt tttctattgt aattcaacac aactgtttaa 361 tagtacttgg aatgttacgg aagggtcaaa taaaactgta ggaaatggca caatcacgct 421 cccatgcaga ataaaacaaa ttataaacct gtggcaggaa gtaggaaaag caatgtatgc 481 ccctcccatc agaggacaaa ttaaatgttc atcaaatatt acagggctgc tattaacaag 541 agatggtggt aatagtgaga acaacgagac tgaggtcttc agacctggag gaggagatat 601 gagggac // | 000000000388da96 | May 23 1995 12:00AM | |||
| 89 | HIVU53279 288 bp DNA linear VRL 18-OCT-1996 | 288 | Subtype C. For sequences in the same study, see accession number U53278- U53317. On Oct 18, 1996 this sequence version replaced gi:1297096 in GenBank. HIV-db sequence updated Jan 2006. | gtatcaactcaactactgttaaatggtagcctagcagaagaagagatagtaattagatctgaaaatctgacagacaatgtcaaaacaataatagtacatcttaataaatctgtagaaattgtgtgtacaagacccaacaataatacaagaaaaagtataaggatagggccaggacaaacattctatgcaacaggagacataataggagacattagacaagcacattgttaacattagtaaagataaatggaatgatactacacaaatggtgggtaaaaaattagcaga | LOCUS HIVU53279 288 bp DNA linear VRL 18-OCT-1996 DEFINITION Human immunodeficiency virus type 1, Vellore, South India, envelope glycoprotein (env) gene, partial cds. subtype C. ACCESSION U53279 VERSION U53279.1 GI:1620571 KEYWORDS . SOURCE Human immunodeficiency virus 1 (HIV-1) ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus group. REFERENCE 1 (bases 1 to 288) AUTHORS Cassol,S., Weniger,B.G., Babu,P.G., Salminen,M.O., Zheng,X., Htoon,M.T., Delaney,A., O'Shaughnessy,M. and Ou,C.Y. TITLE Detection of HIV type 1 env subtypes A, B, C, and E in Asia using dried blood spots: a new surveillance tool for molecular epidemiology JOURNAL AIDS Res. Hum. Retroviruses 12 (15), 1435-1441 (1996) PUBMED 8893051 REFERENCE 2 (bases 1 to 288) AUTHORS Delaney,A.D. TITLE Direct Submission JOURNAL Submitted (02-APR-1996) Allen D. Delaney, Biomedical Research Centre, University of British Columbia, 2222 Health Sciences Mall, Vancouver, BC V6T 1Z3, Canada COMMENT On Oct 18, 1996 this sequence version replaced gi:1297096. FEATURES Location/Qualifiers source 1..288 /organism=""Human immunodeficiency virus 1"" /proviral /mol_type=""genomic DNA"" /isolate=""CMCH2 (dried blood spot)"" /db_xref=""taxon:11676"" gene 1..231 /gene=""env"" CDS <1..231 /gene=""env"" /codon_start=1 /product=""envelope glycoprotein"" /protein_id=""AAC55879.1"" /db_xref=""GI:1297097"" /translation=""VSTQLLLNGSLAEEEIVIRSENLTDNVKTIIVHLNKSVEIVCTR PNNNTRKSIRIGPGQTFYATGDIIGDIRQAHC"" ORIGIN 1 gtatcaactc aactactgtt aaatggtagc ctagcagaag aagagatagt aattagatct 61 gaaaatctga cagacaatgt caaaacaata atagtacatc ttaataaatc tgtagaaatt 121 gtgtgtacaa gacccaacaa taatacaaga aaaagtataa ggatagggcc aggacaaaca 181 ttctatgcaa caggagacat aataggagac attagacaag cacattgtta acattagtaa 241 agataaatgg aatgatacta cacaaatggt gggtaaaaaa ttagcaga // | 128.165.24.130 | 0000000003891883 | Jan 25 2006 11:06AM | Oct 18 1996 12:00AM | |
| 90 | H1476221ENV 1028 bp DNA VRL 08-JUN-1995 | 1028 | NCBI gi: 852513 | ccctctctgtgttaatttaaactgtactaatgtaacttatactaatgcaaccaattgtactgagaataacaatgtggagaacagagaagaaatgaaaaactgctctttcaatataaccacagaaataagagataagaagaagaaagaatacgcgcttttctataaaattgatgtagtgccaattaatggtagtagtagtgattatgtactaataaattgtaatacatcaaccattaaacaggcttgtccaaaggtgaattttgacccaattcccatacattattgtgctccagctggttttgcaattctaaagtgtaaggatgcagagttcaatggaacaggaccatgtaaaaatgtcagtacagtacaatgtacacatggaattaagccagtaatatcaactcaattacttttgaatggcagtttagcagaagaaggcataatgattagatctgaaaacatcacagacaatgccaaaatcataatagtgcagcttaaaacccctataaatattacgtgtgtcagacccaacaacaatacaagaaaaagtatacacttcggtccaggacaagcattttatgcaacaggtgacataataggagatataagacaggcatattgtaatattaataggacaagttggacagggatgttaaaggaggtgagggaaaaactaaaaaacattactgatactgataaaaacataacctttgacacacctgcaggaggggacctagaaattatgacacatagttttaattgtagaggagagtttttctattgtaatacatcaaaactgtttaaaatagaactgtctaataatagtactgatagtgctgagaatggcactatcacactcccatgtaagataaaacaaattgtgagaatgtggcagagagtaggacaagcaatgtatgcccctcccatcgcaggaaacattagatgtgaatcaaatatcacaggactgttattaacaagagatggtgggaggaataacaatacaaatgaaaccttcagacctggaggag | LOCUS H1476221ENV 1028 bp DNA VRL 08-JUN-1995 DEFINITION Human immunodeficiency virus type 1 isolate 94-47622,1 envelope glycoprotein (env) gene, partial cds. ACCESSION U26305 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 1028) AUTHORS Arnold,C., Barlow,K.L., Kaye,S., Loveday,C., Balfe,P. and Clewley,J.P. TITLE HIV-1 sequence subtype G transmission from mother to infant: failure of variant sequence species to amplify in the Roche Amplicor test JOURNAL AIDS Res Hum Retroviruses 11: 999-1001(1995) REFERENCE 2 (bases 1 to 1028) AUTHORS Clewley,J.P. TITLE Direct Submission JOURNAL Submitted (03-MAY-1995) Jonathan P. Clewley, Virus Reference Division, Central Public Health Laboratory, 61 Colindale Avenue, London, NW9 5HT, United Kingdom COMMENT NCBI gi: 852513 FEATURES Location/Qualifiers source 1..1028 /organism="Human immunodeficiency virus type 1" /proviral /isolate="94-47622,1" /note="94-47622 is a vertical transmission from 94-47621. This is a single molecule amplification; 94-47622,1 and 94-47622,5 are others from the same patient" CDS <1..>1028 /gene="env" /note="NCBI gi: 852514" /codon_start=2 /product="envelope glycoprotein" BASE COUNT 402 a 163 c 199 g 264 t ORIGIN 1 ccctctctgt gttaatttaa actgtactaa tgtaacttat actaatgcaa ccaattgtac 61 tgagaataac aatgtggaga acagagaaga aatgaaaaac tgctctttca atataaccac 121 agaaataaga gataagaaga agaaagaata cgcgcttttc tataaaattg atgtagtgcc 181 aattaatggt agtagtagtg attatgtact aataaattgt aatacatcaa ccattaaaca 241 ggcttgtcca aaggtgaatt ttgacccaat tcccatacat tattgtgctc cagctggttt 301 tgcaattcta aagtgtaagg atgcagagtt caatggaaca ggaccatgta aaaatgtcag 361 tacagtacaa tgtacacatg gaattaagcc agtaatatca actcaattac ttttgaatgg 421 cagtttagca gaagaaggca taatgattag atctgaaaac atcacagaca atgccaaaat 481 cataatagtg cagcttaaaa cccctataaa tattacgtgt gtcagaccca acaacaatac 541 aagaaaaagt atacacttcg gtccaggaca agcattttat gcaacaggtg acataatagg 601 agatataaga caggcatatt gtaatattaa taggacaagt tggacaggga tgttaaagga 661 ggtgagggaa aaactaaaaa acattactga tactgataaa aacataacct ttgacacacc 721 tgcaggaggg gacctagaaa ttatgacaca tagttttaat tgtagaggag agtttttcta 781 ttgtaataca tcaaaactgt ttaaaataga actgtctaat aatagtactg atagtgctga 841 gaatggcact atcacactcc catgtaagat aaaacaaatt gtgagaatgt ggcagagagt 901 aggacaagca atgtatgccc ctcccatcgc aggaaacatt agatgtgaat caaatatcac 961 aggactgtta ttaacaagag atggtgggag gaataacaat acaaatgaaa ccttcagacc 1021 tggaggag // | 000000000388f96b | Jun 8 1995 12:00AM | |||
| 91 | H1DR252V3 610 bp RNA VRL 23-MAY-1995 | 610 | NCBI gi: 818094 | ggtagtaattagatctgccaatttcacggacaatgctaaaaccataatagtacagctaaaagagtctgtagaaattaattgtataagacccaacaacaatacaagaaagagtataaatataggaccaggcagagcattttatacaacaggagagataataggagatataagacaagcacattgtaaccttagtagagaaaaatgggggaacactttagaacagatagttagaaaattaagagaagaatttaagaataaaacaatagtctttagtcaatcctcaggaggagacccagaaattgtaacgcacagttttaattgtggaggggaatttttctactgtaattcaacacaactgtttaatagtacttggaatgttacggaagggtcaaataaaactgtaggaaatgacacaatcacgctcccatgcagaataaaacaaattataaacatgtggcaggaagtaggaaaagcaatgtatgcccctcccatcagaggacaaattaaatgttcatcaaatattacagggctgctattaacaagagatggtggtaatagtgagaacaatgagactgaggtcttcagacctggaggaggagatatgagggac | LOCUS H1DR252V3 610 bp RNA VRL 23-MAY-1995 DEFINITION Human immunodeficiency virus type 1 isolate DR252 envelope glycoprotein (env) V3 region, partial cds. ACCESSION U11155 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 285) AUTHORS Diaz,R., Sabino,E., Mayer,A., Mosley,J. and Busch,M. TITLE Dual human immunodeficiency virus type 1 infection and recombination in a dually exposed transfusion recipient JOURNAL J. Virol. 69: 3273-3281 (1995) MEDLINE 95264414 REFERENCE 2 (bases 1 to 610) AUTHORS Mayer,A. TITLE Direct Submission JOURNAL Submitted (22-JUN-1994) Allen Mayer, Irwin Memorial Blood Centers, Scientific Service, 270 Masonic Ave. San Francisco, CA 94118, USA COMMENT NCBI gi: 818094 FEATURES Location/Qualifiers source 1..610 /organism="Human immunodeficiency virus type 1" /isolate="DR252" CDS <1..>610 /gene="env" /note="NCBI gi: 818095" /codon_start=2 /product="envelope glycoprotein" /translation="VVIRSANFTDNAKTIIVQLKESVEINCIRPNNNTRKSINIGPGR AFYTTGEIIGDIRQAHCNLSREKWGNTLEQIVRKLREEFKNKTIVFSQSSGGDPEIVT HSFNCGGEFFYCNSTQLFNSTWNVTEGSNKTVGNDTITLPCRIKQIINMWQEVGKAMY APPIRGQIKCSSNITGLLLTRDGGNSENNETEVFRPGGGDMRD" BASE COUNT 247 a 89 c 132 g 142 t ORIGIN 1 ggtagtaatt agatctgcca atttcacgga caatgctaaa accataatag tacagctaaa 61 agagtctgta gaaattaatt gtataagacc caacaacaat acaagaaaga gtataaatat 121 aggaccaggc agagcatttt atacaacagg agagataata ggagatataa gacaagcaca 181 ttgtaacctt agtagagaaa aatgggggaa cactttagaa cagatagtta gaaaattaag 241 agaagaattt aagaataaaa caatagtctt tagtcaatcc tcaggaggag acccagaaat 301 tgtaacgcac agttttaatt gtggagggga atttttctac tgtaattcaa cacaactgtt 361 taatagtact tggaatgtta cggaagggtc aaataaaact gtaggaaatg acacaatcac 421 gctcccatgc agaataaaac aaattataaa catgtggcag gaagtaggaa aagcaatgta 481 tgcccctccc atcagaggac aaattaaatg ttcatcaaat attacagggc tgctattaac 541 aagagatggt ggtaatagtg agaacaatga gactgaggtc ttcagacctg gaggaggaga 601 tatgagggac // | 000000000388da99 | May 23 1995 12:00AM | |||
| 92 | HINCMCH20 287 bp DNA VRL 06-MAY-1996 | 287 | Subtype C. For sequences in the same study, see accession numbers U53278- U53317. | gtatcaactcaactactgttaaatggtagcctagcagaaggagagataataattagatctgaaaatctgacaaacaatgtcaaaacaataatagtacatcttaatcaatctgtagaaattgtgtgtgcaagacccaacaataatacaagaaaaagtataaggataggaccaggacaaacgttctatgcaacaggaggcataataggagacataagacaagcacattgtaacattagtaaagatacatggaatgaaacgttacaaagggtaggtgaaaaattagcaga | LOCUS HINCMCH20 287 bp DNA VRL 06-MAY-1996 DEFINITION HIV-1 sample CMCH20 from Vellore, South India, env gene, partial cds. ACCESSION U53294 NID g1297126 KEYWORDS . SOURCE Human immunodeficiency virus type 1 (HIV-1), sample CMCH20; env gene extended by PCR amplification from DNA of dried blood spots. ORGANISM Human immunodeficiency virus type 1 Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Retroviridae; Lentivirinae. REFERENCE 1 (bases 1 to 287) AUTHORS Cassol,S., Weniger,B.G., Babu,P.G., Zheng,X, Htoon,M.T., Delaney,A.D., O'Shaughnessy,M.V. and Ou,C-Y. TITLE Detection of HIV type 1 env subtypes A, B, C, and E in Asia using dried blood spots: A new surveillance tool for molecular epidemiology JOURNAL AIDS Res. Hum. Retroviruses 12(15): 1435-1441 (1996) REFERENCE 2 (bases 1 to 287) AUTHORS Delaney,A.D. TITLE Direct Submission JOURNAL Submitted (02-APR-1996) Allen D. Delaney, Biomedical Research Centre, University of British Columbia, 2222 Health Sciences Mall, Vancouver, BC V6T 1Z3, Canada COMMENTS Subtype C. For sequences in the same study, see accession numbers U53278- U53317. FEATURES Location/Qualifiers source 1..287 /organism="Human immunodeficiency virus type 1" /proviral /clone="CMCH20" CDS <1..>287 /gene="env" /codon_start=1 /product="envelope glycoprotein" /db_xref="PID:g1297127" /translation="VSTQLLLNGSLAEGEIIIRSENLTNNVKTIIVHLNQSVEIVCAR PNNNTRKSIRIGPGQTFYATGGIIGDIRQAHCNISKDTWNETLQRVGEKLA" BASE COUNT 127 a 41 c 57 g 62 t ORIGIN 1 gtatcaactc aactactgtt aaatggtagc ctagcagaag gagagataat aattagatct 61 gaaaatctga caaacaatgt caaaacaata atagtacatc ttaatcaatc tgtagaaatt 121 gtgtgtgcaa gacccaacaa taatacaaga aaaagtataa ggataggacc aggacaaacg 181 ttctatgcaa caggaggcat aataggagac ataagacaag cacattgtaa cattagtaaa 241 gatacatgga atgaaacgtt acaaagggta ggtgaaaaat tagcaga // | 00000000038918b0 | May 6 1996 12:00AM | |||
| 93 | H1476222ENV 1352 bp DNA VRL 08-JUN-1995 | 1352 | NCBI gi: 852515 | ggtcacagtctattatggggtacctgtgtgggaagatgcagataccactctattttgtgcatctgatgctaaagcatatgatactgaaagccataatgtttgggctacacatgcctgtgtacccacagaccccaacccacaagaattggatctgaaaaatgtaacagaaaattttaacatgtggaaaaataacatggtagaacacatgcatgaggatataatcagcttatgggatgaaggactaaaaccatgtgtaaagctaacccctctctgtgttactttaaactgtactaatgtaacttatactaatgcaaccaattgtactgagaataacaatgtggagaacagagaagaaatgaaaaactgctctttcaatataaccacagaaataagagataagaagaagaaagaatacgcgcttttctataaaattgatgtagtgccaattaatggtagtagtagtgattatgtactaataaattgtaatacatcaaccattaaacaggcttgtccaaaggtgaattttgacccaattcccatacattattgtgctccagctggttttgcaattctaaagtgtaaggatgcagagttcactggaacaggaccatgtaaaaatgtcagtacagtacaatgtacacatggaattaagccagtaatatcaactcaattacttttgaatggcagtttagcagaagaaggcataatgattagatctgaaaacatcacagacaatgccaaaatcataatagtgcagcttaaaacccctataaatattacgtgtgtcagacccaacaacaatacaagaaaaagtatacacttcggtccaggacaagcattttatgcaacaggtgacataataggagatataagacaggcatattgtaatattaatagaacaagttggacagggatgttaaaggaggtgagggaaaaactaaaaaacattactgatactgataaaaacataacctttgacacacctgcaggaggggacctagaaattatgacacatagttttaattgtagaggagagtttttctattgtaatacatcaaaactgtttaaaatagaactgtctaataatagtactgatagtgctgagaatggcactatcacactcccatgtaagataaaacaaattgtgagaatgtggcagagagtaggacaagcaatgtatgcccctcccatcgcaggaaacattagatgtgaatcaaatatcacaggactgttattaacaagagatggtgggaggaataacaatacaaatgaaaccttcagacctggaggaggagatatgagggacaattggagaagtgaattatataagtataaagtaataaaaattaaac | LOCUS H1476222ENV 1352 bp DNA VRL 08-JUN-1995 DEFINITION Human immunodeficiency virus type 1 isolate 94-47622,2 envelope glycoprotein (env) gene, partial cds. ACCESSION U26306 KEYWORDS . SOURCE Human immunodeficiency virus type 1. ORGANISM Human immunodeficiency virus type 1 Viruses; Retroid viruses; Retroviridae; Lentivirus; Primate immunodeficiency viruses. REFERENCE 1 (bases 1 to 1352) AUTHORS Arnold,C., Barlow,K.L., Kaye,S., Loveday,C., Balfe,P. and Clewley,J.P. TITLE HIV-1 sequence subtype G transmission from mother to infant: failure of variant sequence species to amplify in the Roche Amplicor test JOURNAL AIDS Res Hum Retroviruses 11: 999-1001(1995) REFERENCE 2 (bases 1 to 1352) AUTHORS Clewley,J.P. TITLE Direct Submission JOURNAL Submitted (03-MAY-1995) Jonathan P. Clewley, Virus Reference Division, Central Public Health Laboratory, 61 Colindale Avenue, London, NW9 5HT, United Kingdom COMMENT NCBI gi: 852515 FEATURES Location/Qualifiers source 1..1352 /organism="Human immunodeficiency virus type 1" /proviral /isolate="94-47622,2" /note="94-47622 is a vertical transmission from 94-47621. This is a single molecule amplification; 94-47622,1 and 94-47622,2 are others from the same patient" CDS <1..>1352 /gene="env" /note="NCBI gi: 852516" /codon_start=2 /product="envelope glycoprotein" BASE COUNT 524 a 215 c 268 g 345 t ORIGIN 1 ggtcacagtc tattatgggg tacctgtgtg ggaagatgca gataccactc tattttgtgc 61 atctgatgct aaagcatatg atactgaaag ccataatgtt tgggctacac atgcctgtgt 121 acccacagac cccaacccac aagaattgga tctgaaaaat gtaacagaaa attttaacat 181 gtggaaaaat aacatggtag aacacatgca tgaggatata atcagcttat gggatgaagg 241 actaaaacca tgtgtaaagc taacccctct ctgtgttact ttaaactgta ctaatgtaac 301 ttatactaat gcaaccaatt gtactgagaa taacaatgtg gagaacagag aagaaatgaa 361 aaactgctct ttcaatataa ccacagaaat aagagataag aagaagaaag aatacgcgct 421 tttctataaa attgatgtag tgccaattaa tggtagtagt agtgattatg tactaataaa 481 ttgtaataca tcaaccatta aacaggcttg tccaaaggtg aattttgacc caattcccat 541 acattattgt gctccagctg gttttgcaat tctaaagtgt aaggatgcag agttcactgg 601 aacaggacca tgtaaaaatg tcagtacagt acaatgtaca catggaatta agccagtaat 661 atcaactcaa ttacttttga atggcagttt agcagaagaa ggcataatga ttagatctga 721 aaacatcaca gacaatgcca aaatcataat agtgcagctt aaaaccccta taaatattac 781 gtgtgtcaga cccaacaaca atacaagaaa aagtatacac ttcggtccag gacaagcatt 841 ttatgcaaca ggtgacataa taggagatat aagacaggca tattgtaata ttaatagaac 901 aagttggaca gggatgttaa aggaggtgag ggaaaaacta aaaaacatta ctgatactga 961 taaaaacata acctttgaca cacctgcagg aggggaccta gaaattatga cacatagttt 1021 taattgtaga ggagagtttt tctattgtaa tacatcaaaa ctgtttaaaa tagaactgtc 1081 taataatagt actgatagtg ctgagaatgg cactatcaca ctcccatgta agataaaaca 1141 aattgtgaga atgtggcaga gagtaggaca agcaatgtat gcccctccca tcgcaggaaa 1201 cattagatgt gaatcaaata tcacaggact gttattaaca agagatggtg ggaggaataa 1261 caatacaaat gaaaccttca gacctggagg aggagatatg agggacaatt ggagaagtga 1321 attatataag tataaagtaa taaaaattaa ac // | 000000000388f96e | Jun 8 1995 12:00AM |
last modified: Mon Sep 1 17:53 2008