RCSB Software Tools
Data Extraction and Deposition Preparation Tools
- pdb_extract (for workstation)
Tools and examples for extracting mmCIF data from structure determination applications
- ADIT (for workstation)
A web-based package for preparing, editing and checking structure data entries
Data Format Conversion Tools
- PDBML2CIF
A tool for converting PDBML data files into mmCIF data files
- CIFTr
A tool for translating mmCIF data files into PDB format
- MAXIT
An application for processing and annotating of macromolecular structure data
- sf-convert
UPDATED! October 13, 2008 A format conversion tool for structure factor files that supports more than a dozen file formats
- MMCIF Dictionary Suite
Collection of tools to parse, validate, manage data dictionaries used by
the PDB. Applications are also included, which convert data dictionaries to
XML schema, provide HTML browsing, produce mapping information for
relational database loaders (Db Loader) and convert data files between
related CIF dialects
Data Validation Tools
Data Parsing Tools
- CIFPARSE-OBJ
A Class Library of Access Tools for mmCIF in C++
- CIFPARSE
A C Library of Access Tools for mmCIF in C (no longer maintained)
- STAR (CIF) Parser
Several object-oriented Perl modules to parse mmCIF data files
Dictionary and Data Management Tools
- DICT-OBJ-FILE
A Class Library of mmCIF Dictionary Access Tools (formerly known as CIFOBJ)
- CIFTABLE (ISTable)
A Class Library of Table Access Tools for mmCIF data
- Db Loader
An application to load mmCIF data into relational databases and XML
(formerly known as mmcif-loader)
Other Software Tools
- mmLIB
a Python macromolecular toolkit (including support for mmCIF)
- BioPython
Python toolkit for computational biology (including support for mmCIF)
- XML2PDB an open-source C++ program for converting XML to PDB format
- OOSTAR Applications
to Manipulate STAR Files (Objective-C)
- OpenRasMol Open source versions
of RasMol (with CIF support)
- CBFLib
A library of ANSI-C functions providing a simple mechanism for accessing
Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF)
files
- cif2pdb
Program to Convert mmCIF to pseudo-PDB Format
- CIFtbx2
Extended CIF Tool Box (Fortran) with CYCLOPS and cif2cif
- pdb2cif
Scripts to Filter a PDB Entry and Produce mmCIF
- CIFLIB C Language Application Program Interface (no longer supported)
- OpenMMS Toolkit
A suite of Java source code that includes an mmCIF parser,
RDBMS loader, XML translator, and Corba server (no longer supported)
View the RCSB Data Processing Software Tools License Agreement.
Questions or comments? Contact Us.