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BLAST
Introduction
What is BLAST?
Query Sequence in FASTA Format
What does BLAST tell you?
Choices
BLAST Programs: Which One to Use?
BLAST Databases: Which One to Search?
Examples
Nucleotide-Nucleotide BLAST (
blastn
)
Protein-Protein BLAST (
blastp
)
Translated BLAST (
blastx
)
Options
Alignment Views
Modifying BLAST Search Parameters
Additional BLAST programs
More Similarity Programs
Other Ways to Retrieve Similar Sequences
Conserved Domain Search (
CD-Search
)
Hands-On
Exercises
User Questions
More...
References
Index of Slides for This Module
BLAST
Revised 11/05/2007
