NIH Proteomics Interest Group
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ARCHIVES

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PROTIG SEMINAR SERIES 2008-09

Vineet Bafna, Ph.D., University of California, San Diego, January 9, 2009
"Proteogenomics, and other non-traditional applications of mass spectrometry"
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Jarrod Marto, Ph.D, Harvard Medical School, December 4, 2008
"Quantitative Proteomics Analysis of Aberrant Molecular Events in Acute Myeloid Leukemia"
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Ileana Cristea, Princeton University, November 7, 2008
"Uncovering Protein Complexes and Assemblies: Stories of Dynamic Virus-Host Interactions and Specific Synapse Characterization"
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Ronald Beavis, University of British Columbia, October 3, 2008
"If you had all of the proteomics information in the world, what would you do with it?"
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PROTIG SEMINAR SERIES 2007-08

Klaus Hahn, University of North Carolina, May 23, 2008
"Dynamics of macromolecular complexes in living cells: Multiplex imaging of signaling activities, genetically encoded protein uncaging, and RapR-FAK"
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Steven A. Carr, Broad Institute of MIT and Harvard, April 11, 2008
"Progress Toward a Biomarker Discovery-to-Development Pipeline in Clinical Proteomics"
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Forest White, Massachusetts Institute of Technology, March 7, 2008
"Quantitative Analysis of Oncogenic Kinase Signaling Networks"
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Jeffrey W. Smith, Burnham Institute, February 8, 2008
"Interrogating Proteolytic Pathways"
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Heather Desaire, University of Kansas, January 11, 2008
"Glycoproteomic analysis of HIV envelope proteins, with a focus towards vaccine development"
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Thomas A. Neubert, New York University School of Medicine, December 7, 2007
"Using SILAC to Study Cell Signaling in Neurons"
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Brian Searle, Proteome Software, November 14, 2007
"Improving Protein Identifications: Combining Results from Multiple MS/MS Search Engines"
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Jef D. Boeke, Johns Hopkins University School of Medicine, October 26, 2007
"K is Special: Proteomics and Interactomics of Lysine Modification"
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Nuno Bandeira, University of California, San Diego, September 21, 2007
"Spectral Networks: A New Approach to the Identification of Proteins and Post-translational Modifications"
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PROTIG SEMINAR SERIES 2006-07

Amanda Paulovich, Fred Hutchinson Cancer Research Center, May 4, 2007
"Towards an Optimized Biomarker Discovery and Verification Pipeline"
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Cheryl Arrowsmith, University of Toronto, April 13, 2007
"The Structural Genomics Consortium: Structural and chemical genomics of human protein families"
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Gerald Hart, Johns Hopkins University, March 16, 2007
"Dynamic Molecular Diversity Created by the Interplay Between O-GlcNAcylation and Phosphorylation: Roles in Diabetes, Neurodegeneration and Cancer"
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Leigh Anderson, Plasma Proteome Institute , February 2, 2007
"Targeted MS Assays for Biomarkers: Enabling a Biomarker Pipeline"
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Mark W. Duncan, University of Colorado at Denver and Health Sciences Center, January 5, 2007
"A Pragmatic Approach to Clinical Proteomics"
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Jennifer van Eyk, Johns Hopkins University, December 8, 2006
"Proteomic Insights into Mitochondria in Cardiac Disease"
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Michal Sharon, Cambridge University, November 3, 2006
"The Emerging Role of Mass Spectrometry in Structure Elucidation of Cellular Complexes"
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Lloyd Fricker, Albert Einstein College of Medicine, October 6, 2006
"Quantitative Peptidomics to Define the Function of Endogenous Neuropeptides and Peptidases:
Implications in Obesity"

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PROTIG SEMINAR SERIES 2005-06

Gary P. Nolan, Stanford University, June 9, 2006
"Single Cell Kinase Signaling for Mechanistic and Clinical Analyses"
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Eleftherios P. Diamandis, University of Toronto, March 3, 2006
"Proteomic and Genomic Approaches for Discovering Cancer Biomarkers:
Current Status and Future Prospects"

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Trey Ideker, University of California San Diego, February 3, 2006
"Protein Network Comparative Genomics"
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David S. Millington, Duke University, January 6, 2006
"Applications of Targeted Metabolic Profiling"
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Robert F. Murphy, Carnegie Mellon University, December 9, 2005
"Location Proteomics: A Systems Biology Approach to Subcellular Location"
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Jon Klein, University of Louisville, November 4, 2005
"Proteomic Analysis of Diabetic Renal Disease Models"
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Thierry Rabilloud, Grenoble, France. October 7, 2005
"Proteomic Analysis of Cellular Responses to Oxidative Stress"
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Pavel Pevzner, University of California San Diego. September 9, 2005
"Identification of Post-translational Modifications via Blind Search of Mass-Spectra"
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PROTIG SEMINAR SERIES 2004-05

Barbara Graves, University of Utah. June 3, 2005.
"Specificity with the ETS Family of DNA Binding Transcription Factors"
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Paul Tempst, Cornell University. May 6, 2005.
"Serum Peptide Signatures of Solid Tumor Cancers"
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Dominic M. Desiderio, University of Tennessee. April 1, 2005.
"Human Pituitary Proteomics"
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Benjamin Cravatt, The Scripps Research Institute. March 4, 2005.
"Activity-Based Protein Profiling: Chemical Strategies for Functional Proteomics"
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Neil Kelleher, University of Illinois. February 18, 2005.
"Top Down Mass Spectrometry: 2005"
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Akhilesh Pandey, Johns Hopkins University. February 4, 2005.
"Proteomic Approaches to Study Signal Transduction Pathways"
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Ruth Hogue Angeletti, Albert Einstein College of Medicine. January 7, 2005.
"Finding Function with Mass Spectrometry in Cancer and Infectious Disease"
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Michael Snyder, Yale University. December 3, 2004.
"Analyze This and That: Genomes and Proteomes"
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Kathleen Gould, Vanderbilt University. November 5, 2004.
"Probing Unexpected Connections between Cell Cycle Control and Pre-mRNA Splicing"
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Karl Clauser, Broad Institute, MIT-Harvard. September 10, 2004.
"Proteomic Approaches for Understanding Kinase Mediated Signalling and Discovering Arthritis Biomarkers"
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PROTIG MONTHLY SEMINAR SERIES 2003-04

Mark B. Gerstein, Yale University. May 7, 2004.
"Computational Proteomics: Pseudogenes in the Human Genome, in Context"
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Michael Rexach, Stanford University. April 16, 2004.
"The Nuclear Envelope and Nucleo-cytoplasmic Transport"
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Trey Ideker, UCSD. April 2, 2004.
"Finding Conserved Pathways and Complexes via Protein Network Alignment"
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Jennifer van Eyk, Johns Hopkins University. March 5, 2004.
"Proteomics in Cardiac Disease: From Molecular Mechanism to Diagnostic Markers"
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Erin O'Shea, UCSF. February 6, 2004.
"Global Analysis of Protein Localization in Budding Yeast"
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Kevan Shokat, UCSF. January 9, 2004.
"New Chemical Genetic Tools to Study Signal Transduction Cascades"
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David Fenyo, Amersham Biosciences. December 5, 2003.
"Testing the Significance of Protein Identification Results"
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Bradford W. Gibson, Buck Institute, UCSF. November 14, 2003.
"Developing New Proteomic Tools for Studying Mitochondrial Dysfunction and Age-Related Diseases"
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SYMPOSIUM ARCHIVES


Biomarker Symposium, September 13, 2006
Werner Zolg, Roche Diagnostics, Basel
"Proteomics Strategies: Hurdles and Solutions Learned in the Search for Biomarkers"
Michael Gillette, MGH/Broad Institute, Cambridge, MA
"Bad Transit Pipelines: What Prudhoe Bay and Biomarker Discovery have in Common"
Robert E. Gerszten, MGH/Broad Institute, Cambridge, MA
"Targeted MS for Metabolomics and Proteomics"
Hudson Freeze, Burnham Institute, LaJolla
"Mining the Glycome for Inherited and Acquired Disease Biomarkers"
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Exploring the Proteome II (May 2, 2003)
Richard Caprioli, Vanderbilt University
"Profiling and Imaging of Proteins in Tissue Sections using Mass Spectrometry as a Discovery Tool in Biological and Clinical Research"
Steven Carr, Millennium Pharmaceuticals
"Biomarker Discovery by Proteomics"
Donald Hunt, University of Virginia
"Analysis of Differential Protein Expression, the Phosphoproteome, Protein-Protein Interactions, and the Histone Code by Fourier Transform and Ion Trap MS"
Steven Gygi, Harvard Medical School
"A proteomics approach to understanding protein ubiquitination"
Peter Roepstorff, DABIC University of Southern Denmark, Odense
"Assignment of post translational modifications is essential in proteomics"
Carol Robinson, Cambridge University
"Exploring dynamic protein interactions using mass spectrometry"
Brian Chait, Rockefeller University
"Proteomic Tools for Dissecting Cellular Function"
Rolf Apweiler, European Bioinformatics Institute-Hinxton
"Integration and Standardization: Driving forces in protein informatics"


The Next Step: Exploring the Proteome (May 21, 2001)
Leigh Anderson, Large Scale Proteomics Corporation
"Proteomics for Clinical and Research Use: Combining Protein Chips, 2D Gels and Mass Spectrometry"
Jean-Charles Sanchez, Geneva University Hospital
"Biomedical applications of proteomics"
Scott Patterson, Celera Genomics
"The Use of Mass Spectrometry in Proteomics"
Ruedi Aebersold, The Institute for Systems Biology
"Quantitative Proteome Analysis: New Technology and Applications"
Philip Andrews, University of Michigan Center for Proteome Studies
"Mapping Organisms Using Proteomics: Strategies, Technologies, and Infrastructure"
Jonathan Minden, Carnegie Mellon University
"Proteome Stargazing"
John Cottrell, Matrix Science Ltd.
"Protein identification by combining mass spectrometry and bioinformatics"
James Garrels, PROTEOME Division, Incyte Genomics, Inc.
"Building a foundation of protein knowledge to support post-genomic research: The BioKnowledge Library Project"
Eugene Koonin, Computational Biology Branch, NCBI, NLM, NIH
"Phylogenomics of Protein Domains"



ARCHIVED LECTURES

Several NIH lectures have been recorded for web access. Individual lecture slides and audio can be accessed with an updated version of RealPlayer or RealOne (or an equivalent) installed on a Windows-PC. Lectures are close captioned and can be text searched.

Sam Hanash, University of Michigan. March 05, 2002.
Challenges and Opportunities for Major Initiatives in Proteomics

Douglas Sheeley, National Center For Research Resources
Jeffrey Kowalak, National Institute of Mental Health
Tutorials on Mass Spectrometry/Proteomics


NIH VIDEOCAST ARCHIVES

Several NIH proteomics lectures are available at the NIH Videocast site at http://videocast.nih.gov/PastEvents.asp?c=36.

Kevin White, University of Chicago. May 20, 2008
"Model Systems Biology: Biomarker Discovery and Drug Target Identification"
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Trans-NIH Systems Biology Workshop. May 12, 2008
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Ruedi Aebersold, Swiss Federal Institute of Technology. April 2, 2008
"Systems Biology: Network of Networks"
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Leroy Hood, Institute for Systems Biology. March 25, 2008
"Systems Biology and Systems Medicine"
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Sean Eddy, Janelia Farm Research Institute. March 20, 2008
"HMMER: A New Generation of Homology Search Software"
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Dan Billadeau, Mayo Clinic College of Medicine. March 19, 2008
"Regulation of Integrin Activation by the WAVE2 Complex"
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Jan Schnitzer, Sidney Kimmel Cancer Center. February 27, 2008
"Proteomic Imaging of Endothelium and its Caveolae In Vivo: Pumping Antibody into Specific Organs and Solid Tumors"
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Mark Mayer, NICHD. December 20, 2007
"Structural Studies on Glutamate Receptor Ion Channels: the Molecules of Memory"
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Axel Brunger, Stanford University. October 18, 2007
"Structural and Functional Insights of Synaptic Vesicle Fusion"
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Ozlem Keskin and Ruth Nussinov. September 25, 2007
"Protein-Protein Interactions - What is the Preferred Way for Proteins to Interact?"
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Denise Kirschner, University of Michigan. June 19, 2007.
"Multi-Scale Approaches Towards Understanding the Immune Response"
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Michael Roukes, California Institute of Technology. June 6, 2007.
"Nanocraft v. Nanotechnology: Realizing Transformational Tools for the Life Sciences and Medicine"
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Andrea Califano, Columbia University. February 20, 2007.
"Genome-wide Discovery of Post-translational Modulators of Transcriptional Interactions in Human B Lymphocytes"
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Joshua LaBaer, Harvard Medical School. January 17, 2007.
"Functional Proteomics for Biomarker and Target Discovery"
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Standards in Proteomics: Building Blocks, Biological Pathways and Networks (Day 2). January 05, 2005.
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Standards in Proteomics: Building Blocks, Biological Pathways and Networks (Day 1). January 04, 2005.
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John B. Fenn, Virginia Commonwealth University. January 07, 2004.
"Electrospray Wings for Molecular Elephants"
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Natalie G. Ahn, University of Colorado. December 10, 2003.
"Functional Proteomics: Methods Development and Applications to Signal Transduction"
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Elise C. Kohn, NCI. December 10, 2003.
"Molecular Targeted Therapeutics and Proteomics in Ovarian Cancer"
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Katherine Kellersberger, University of Maryland. November 18, 2003.
"Zinc-Finger Protein HIV-1 Nucleocapsid p7 Studied by Electron Capture Dissociation ESI-FTMS"
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Brian Luke, Advanced Biomedical Computing Center, SAIC. May 13, 2003.
"Extracting Information from Large Datasets"
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John Yates, The Scripps Research Institute. April 04, 2003.
"Towards Comprehensive Proteomics of Cells"
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Cecile Pickart, Johns Hopkins University. March 14, 2003.
"Proteolytic Signaling by Polyubiquitin Chains"
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Kristy J. Reynolds, University of Maryland. March 11, 2003.
"Development of the Proteolytic 18O Labeling Method for Comparative Proteomics"
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John Roach, Food and Drug Administration. February 11, 2003.
"ESI LC-MS/MS Detection and Occurrence of Acrylamide in U.S. Foods"
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Chin-Kai Meng, Agilent Technologies. January 28, 2003.
"Electrospray and John Fenn, Nobel Laureate"
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Julia Ann Dolan, Bureau of Alcohol, Tobacco and Firearms. January 14, 2003.
"Applications of Mass Spectrometry to Forensic Science: Analysis of Evidence from Arson and Explosive Incidents"
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David M. Bunk, Analytical Chemistry Division, NIST. December 10, 2002.
"Proteomics Approaches to the Determination of Proteins for Clinical and Food Analysis"
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Jack Simpson, Protein Chemistry Laboratory, SAIC-Frederick. November 12, 2002.
"Surface Plasmon Resonance - Mass Spectrometry"
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Barry O'Keefe, Molecular Targets Drug Discovery Program, NCI. October 08, 2002.
"Mass Spectrometry of Proteins and Peptides in the Molecular Targets Discovery Program"
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Systems Biology Approaches to Health Care: Mitochondrial Proteomics (Day 2). September 18, 2002.
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Systems Biology Approaches to Health Care: Mitochondrial Proteomics (Day 1). September 17, 2002.
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Susanne C. Moyer, Johns Hopkins University. August 13, 2002.
"Fragmentation of Phosphotyrosine-Containing Peptides by Atmospheric Pressure MALDI Ion Trap Mass Spectrometry"
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David Newman, Natural Products Branch, NCI-Frederick. May 14, 2002.
"The Staurosporin Nucleus, a Molecule(!) for All Diseases"
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The Proteomics Planning Meeting (Day 2). April 26, 2002.
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The Proteomics Planning Meeting (Day 1). April 25, 2002.
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Amina Woods, NIDA. March 19, 2002.
"Targeted Proteomics: A Study of the Interaction of a Ganglionic Blocker with the Neuronal Nicotinic Acetycholine Receptor"
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Sam Hanash, University of Michigan. March 05, 2002.
"Challenges and Opportunities for Major Initiatives in Proteomics"
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Thierry Rabilloud, Commission de L'energie Atomique-Grenoble, France. February 26, 2002.
"2D Electrophoresis in Proteomics: Caveats and Perspectives"
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Tina Gatlin, Director of Mass Spectrometry, Large Scale Biology. February 12, 2002.
"Automating the Proteomics Facility"
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Toxicogenomics Symposium on Gene Expression and Proteomics in Environmental Health Research (Day 2). December 04, 2001.
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Toxicogenomics Symposium on Gene Expression and Proteomics in Environmental Health Research (Day 1). December 03, 2001.
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LECTURE FILES

Andrew J. Alpert, PolyLC Inc. August 7, 2003.
"HPLC of Really Difficult Protein Mixtures: Prions to Proteomics" (Adobe Acrobat 5.0 pdf file)


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This site was updated on January 9, 2009. Please contact Renee Olano at olanol(at)mail.nih.gov with problems or suggestions. Thanks!