AFSC 2005 Publications List

Authors citing affiliation with AFSC are denoted in the list with boldface. Searching through this list by using keywords such as author's name, species name, or subject can easily be done with the "Find in Page" or "Find on this Page" feature under the "Edit" pull-down menu in most Internet browsers.  PLEASE NOTE:  Some links will take you off the AFSC Website. You may wish to view the privacy and disclaimer notices on those sites, as their policies for collecting and distributing information may differ from ours.

ABOOKIRE, A. A., and J. F. PIATT.
  2005. Oceanographic conditions structure forage fish into lipid-rich and lipid-poor communities in lower Cook Inlet, Alaska. Mar. Ecol. Prog. Ser. 287:229-240.  Online. (.pdf, 316 KB).

ABOOKIRE, A. A., and C. S. ROSE.
  2005. Modifications to a plumb staff beam trawl for sampling uneven, complex habitats. Fish. Res. 71:247-254.

AMES, R. T., G. H. WILLIAMS, and S. M. FITZGERALD.
  2005. Using digital video monitoring systems in fisheries: Application for monitoring compliance of seabird avoidance devices and seabird mortality in Pacific halibut longline fisheries. U.S. Dep. Commer., NOAA Tech. Memo., NMFS-AFSC-152, 93 p.  Online. (.pdf, 2.21MB).

ANDRIOLO, A., U. PIOVEZAN, M. J. R., PARANHOS da COSTA, J. LAAKE, and J. M. B. DUARTE.
  2005. Aerial line transect survey to estimate abundance of marsh deer (Blastocerus dichotomus) (Illiger, 1815). Braz. Arch. Biol. Technol. 48:807-814.

ANGLISS, R. P., and R. B. OUTLAW.
  2005. Alaska marine mammal stock assessments, 2005. U.S. Dep. Commer., NOAA Tech. Memo., NMFS-AFSC-161, 250 p.  Online. (.pdf, 12.6MB).

ARMSTRONG, J. L., J. L. BOLDT, A. D. CROSS, J. H. MOSS, N. D. DAVIS, K. W. MYERS, R. V. WALKER, D. A. BEAUCHAMP, and J. HALDORSON.
  2005. Distribution, size, and interannual, seasonal and diel food habits of northern Gulf of Alaska juvenile pink salmon, Oncorhynchus gorbuscha. Deep-Sea Res. II 52:247-265.

AYDIN, K. Y., G. A. McFARLANE, J. R. KING, B. A. MEGREY, and K. W. MYERS.
  2005. Linking ocean food webs to coastal production and growth rates of Pacific salmon (Oncorhynchus spp.), using models on three scales. Deep-Sea Res. II 52:757-780.

BAIER, C. T., and M. TERAZAKI.
  2005. Interannual variability in a predator-prey interaction: Climate, chaetognaths and copepods in the southeastern Bering Sea. J. Plank. Res. 27:1113-1125.

BAILEY, K. M., H. NAKATA, and H. W. van der VEER.
  2005. The planktonic stages of flatfish: physical and biological interactions in transport processes, p. 94-119. In R. N. Gibson (editor). Flatfishes: Biology and Exploitation. Blackwell Publishing, Oxford.

BAILEY, K. M., L. CIANNELLI, N. A. BOND, A. BELGRANO, and N. C. STENSETH.
  2005. Recruitment of walleye pollock in a physically and biologically complex ecosystem: A new perspective. Prog. Oceanogr. 76:24-42.

BAKER, A. R., T. R. LOUGHLIN, V. BURKANOV, C. W. MATSON, R. G. TRUJILLO, D. G. CALKINS, J. K. WICKLIFFE, and J. W. BICKHAM.
  2005. Variation of mitochondrial control region sequences of Steller sea lions: the three-stock hypothesis. J. Mammal. 86:1075-1084.

BARBEAUX, S. J., S. GAICHAS, J. N. IANELLI, and M. W. DORN.
  2005. Evaluation of biological sampling protocols for at-sea groundfish observers in Alaska. Alaska Fish. Res. Bull. 11:82-101.  Online. (.pdf, 1.24MB).

BENGTSON, J. L., L. M. HIRUKI-RARING, M. A. SIMPKINS, and P. L. BOVENG.
  2005. Ringed and bearded seals densities in the eastern Chukchi Sea, 1999-2000. Polar Biol. 28:833-845.

BORNHOLD, B. D., C. V. JAY, R. McCONNAUGHEY, G. RATHWELL, K. RHYNAS, and W. COLLINS.
  2005. Walrus foraging marks on the seafloor in Bristol Bay, Alaska: a reconnaissance survey. Geo-Mar. Lett. 25:293-299.

BOVENG, P. L., J. L. BENGTSON, and M. A. SIMPKINS.
  2005. Distribution and abundance of harbor seals in Cook Inlet: seasonal variability in relation to key life history events, p. 81-82. In MBC Applied Environmental Sciences, Proceedings of the Tenth MMS Information Transfer Meeting and Barrow Information Update Meeting. Anchorage, AK, U.S. Department of the Interior, Minerals Management Service, Alaska OCS Region. (OCS Study MMS-2005-036).

BOVENG, P. L., J. L. BENGTSON, and M. A. SIMPKINS.
  2005. Movements and habitat use of harbor seals in Cook Inlet, p. 83-84. In MBC Applied Environmental Sciences, Proceedings of the Tenth MMS Information Transfer Meeting and Barrow Information Update Meeting. Anchorage, AK, U.S. Department of the Interior, Minerals Management Service, Alaska OCS Region. (OCS Study MMS-2005-036).

BRANDON, E. A. A., D. G. CALKINS, T. R. LOUGHLIN, and R. W. DAVIS.
  2005. Neonatal growth of Steller sea lion (Eumetopias jubatus) pups in Alaska. Fish. Bull., U.S. 103:246-257.  Online. (.pdf, 396KB).

BRISCOE, R. J., M. D. ADKISON, A. WERTHEIMER, and S. G. TAYLOR.
  2005. Biophysical factors associated with the marine survival of Auke Creek, Alaska, coho salmon. Trans. Am. Fish. Soc. 134:817-828.

BROWN, R. F., B. E. WRIGHT, S. D. RIEMER, and J. LAAKE.
  2005. Trends in abundance and current status of harbor seals in Oregon: 1977-2003. Mar. Mammal Sci. 21(4):657-670.

BUREK, KATHY A., K. BECKMEN, T. GELATT, W. FRASER, A. J. BRACHT, K. A. SMOLAREK, and C. H. ROMERO.
  2005. Poxvirus infection of Steller sea lions (Eumetopias jubatus) in Alaska. J. Wildl. Dis. 41:745-752.

BURKANOV, V. N., and T. R. LOUGHLIN.
  2005. Distribution and abundance of Steller sea lions, Eumetopias jubatus, on the Asian coast, 1720's-2005. Mar Fish. Rev. 67(2):1-62.  Online. (.pdf, 20MB).

BUSBY, M. S.
  2005. An unusual macrourid larva (Gadiformes) from San Juan Island, Washington, USA. Ichthyol. Res. 52:86-89.

BUSBY, M. S., K. L. MIER, and R. D. BRODEUR.
  2005. Habitat associations of demersal fishes and crabs in the Pribilof Islands region of the Bering Sea. Fish. Res. 75:15-28.

CALL, K. A., and T. R. LOUGHLIN.
  2005. An ecological classification of Alaskan Steller sea lion (Eumetopias jubatus) rookeries: a tool for conservation/management. Fish. Oceanogr. 14 (Suppl. 1):212-222.

CANINO, M. F., P. T. O'REILLY, L. HAUSER, and P. BENTZEN.
  2005. Genetic differentiation in walleye pollock (Theragra chalcogramma) in response to selection at the pantophysin (PanI) locus. Can. J. Fish. Aquat. Sci. 62:2519–2529.

CARLS, M. G., R. A. HEINTZ, G. D. MARTY, and S. D. RICE.
  2005. Cytochrome P4501A induction in oil-exposed pink salmon Oncorhynchus gorbuscha embryos predicts reduced survival potential. Mar. Ecol. Prog. Ser. 301:253-265.  Online. (.pdf, 1.22 MB).

CARRETTA, J. V., K. A. FORNEY, M. M. MUTO, J. BARLOW, J. BAKER, B. HANSON, and M. S. LOWRY.
  2005. U.S. Pacific marine mammal stock assessments: 2004. U.S. Dep. Commer. NOAA Tech. Memo., NMFS-SWFSC-375, 316 p.  Online. (.pdf, 5.42MB).

CIANNELLI L., and K. M. BAILEY.
  2005. Landscape (seascape) dynamics and underlying species interactions: the cod-capelin system in the southeastern Bering Sea. Mar. Ecol. Prog. Ser. 291:227-236.  Online. (.pdf, 698 KB).

CIANNELLI, L., K. M. BAILEY, N. C. STENSETH, K-S. CHAN, and A. BELGRANO.
  2005. Climate change causing phase transition of walleye pollock (Theragra chalcogramma) recruitment dynamics. Proc. Royal Soc. B. 272:1735-1743.

CIANNELLI, L., D. Ø. HJERMANN, P. LeHODEY, G. OTTERSEN, J. T. DUFFY-ANDERSON, and N. C. STENSETH.
  2005. Climate forcing, food web structure, and community dynamics in pelagic marine ecosystems, p. 143-169. In A. Belgrano, U. M. Scharler, J. Dunne and R. E. Ulanowicz (editors), Aquatic Food Webs – An Ecosystem Approach. Oxford University Press, Oxford.

CLAPHAM, P. J.
  2005. Publish or perish. BioScience 55(5):390-391.

COOPER, D. W., K. E. PEARSON, and D. R. GUNDERSON.
  2005. Fecundity of shortspine thornyhead (Sebastolobus alascanus) and longspine thornyhead (S. altivelis) (Scorpaenidae) from the northeastern Pacific Ocean, determined by stereological and gravimetric techniques. Fish. Bull., U.S. 103:15–22.  Online. (.pdf, 291KB).

CROSS, A. D., D. A. BEAUCHAMP, J. L. ARMSTRONG, M. BLIKSHTEYN, J. L. BOLDT, N. D. DAVIS, L. J. HALDORSON, J. H. MOSS, K. W. MYERS, and R. V. WALKER.
  2005. Consumption demand of juvenile pink salmon in Prince William Sound and the coastal Gulf of Alaska in relation to prey biomass. Deep-Sea Res. II 52:347-370.

DAVIS, M. W.
  2005. Behaviour impairment in captured and released sablefish: ecological consequences and possible substitute measures for delayed discard mortality. J. Fish. Biol. 66:254-265.

DAVIS, M. W., and C. B. SCHRECK.
  2005. Responses by Pacific halibut to air exposure: Lack of correspondence among plasma constituents and mortality. Trans. Am. Fish. Soc. 134:991-998.

De ROBERTIS, A., C. A. MORGAN, R. A. SCHABETSBERGER, R. W. ZABEL, R. D. BRODEUR, R. L. EMMETT, C. M. KNIGHT, G. K. KRUTZIKOWSKY, and E. CASILLAS.
  2005. Columbia River plume fronts. II. Distribution, abundance, and feeding ecology of juvenile salmon. Mar. Ecol. Prog. Ser. 299:33-44.  Online. (.pdf, 138 KB).

DEW, C. B., and R. A. McCONNAUGHEY.
  2005. Did trawling on the brood stock contribute to the collapse of Alaska’s king crab? Ecol. Appl. 15(3):919-941.  Online. (.pdf, 900KB).

DUFFY-ANDERSON, J. T., K. BAILEY, L. CIANNELLI, P. CURY, A. BELGRANO, and N. C. STENSETH.
  2005. Phase transitions in marine fish recruitment processes. Ecol. Complex. 2:205-218.

DURBAN, J. W., and D. A. ELSTON.
  2005. Mark-recapture with occasion and individual effects: Abundance estimation through Bayesian model selection in a fixed dimensional space. J. Agric. Biol. Environ. Stat. 10:291-305.

EBERHARDT, L. L., J. L. SEASE, and D. P. DeMASTER.
  2005. Projecting the trend of Steller sea lion populations in western Alaska. Mar. Mammal Sci. 21(4):728-738.

ETNIER, M. A., and C. W. FOWLER.
  2005. Comparison of size selectivity between marine mammals and commercial fisheries with recommendations for restructuring management policies. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-159, 274 p.  Online. (.pdf, 2.38MB).

FADELY, B. S., B. W. ROBSON, J. T. STERLING, A. GREIG, and K. A. CALL.
  2005. Immature Steller sea lion (Eumetopias jubatus) dive activity in relation to habitat features of the eastern Aleutian Islands. Fish. Oceanogr. 14 (Suppl. 1):243-258.

FARLEY, E. V., Jr., J. M. MURPHY, B. W. WING, J. H. MOSS, and A. MIDDLETON.
  2005. Distribution, migration pathways, and size of western Alaska juvenile salmon along the eastern Bering Sea shelf. Alaska Fish. Res. Bull. 11:15-26.  Online. (.pdf, 1.31MB).

FEWSTER, R. M., J. L. LAAKE, and S. T. BUCKLAND.
  2005. Line transect sampling in small and large regions. Biometrics 61:856-861.

FLEISCHER, G. W., K. D. COOKE, P. H. RESSLER, R. E. THOMAS, S. K. de BLOIS, L. C. HUFNAGLE, A. R. KRONLUND, J. A. HOLMES, and C. D. WILSON.
  2005. The 2003 integrated acoustic and trawl survey of Pacific hake, Merluccius productus, in U.S. and Canadian waters off the Pacific coast. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-NWFSC-65, 45 p.  Online.  (.pdf, 2.85MB).

FOWLER, C. W.
  2005. Sustainability, health, and the human population. EcoHealth 2:58-69.

FRITZ, L.
  2005. Monitoring Steller sea lion numbers. Alaska Seas & Coast 1:2.  Online.  (.pdf, 749KB)

FRITZ, L. W., and S. HINCKLEY.
  2005. A critical review of the regime shift – "junk food" – nutritional stress hypothesis for the decline of the western stock of Steller sea lion. Mar. Mammal Sci. 21:476-518.

FRITZ, L. W., and E. S. BROWN.
  2005. Survey- and fishery-derived estimates of Pacific cod (Gadus macrocephalus) biomass: Implications for strategies to reduce interactions between groundfish fisheries and Steller sea lions (Eumetopias jubatus). Fish. Bull., U.S. 103:501-515.  Online.  (.pdf, 650KB).

FRITZ, L. W., and C. STINCHCOMB.
  2005. Aerial, ship, and land-based surveys of Steller sea lions (Eumetopias jubatus) in the western stock in Alaska, June and July 2003 and 2004. U.S. Dep. Commer., NOAA Tech. Memo., NMFS-AFSC-153, 56 p.  Online.  (.pdf, 1.28MB).

GALES, N. J., T. KASUYA, P. J. CLAPHAM, and R. L. BROWNELL, Jr.
  2005. Japan’s whaling plan under scrutiny. Nature 435(7044):883-884.

GULLAND, F. M. D., H. PÉREZ-CORTÉS M., J. URBÁN R., L. ROJAS-BRACHO, G. YLITALO, J. WEIR, S. A. NORMAN, M. M. MUTO, D. J. RUGH, C. KREUDER, and T. ROWLES.
  2005. Eastern North Pacific gray whale (Eschrichtius robustus) unusual mortality event, 1999-2000. U.S. Dep. Commer., NOAA Tech. Memo., NMFS-AFSC-150, 33 p.  Online. (.pdf, 370KB).

HAWKINS, S. L., J. HEIFETZ, C. M. KONDZELA, J. E. POHL, R. L. WILMOT, O. N. KATUGIN, and V. N. TUPONOGOV.
  2005. Genetic variation of rougheye rockfish (Sebastes aleutianus) and shortraker rockfish (S. borealis) inferred from allozymes. Fish. Bull., U.S. 103:524-535.  Online. (.pdf, 430KB).

HEARD, W. R., and L-L. LOW.
  2005. Status of Alaska’s salmon fisheries. Arctic Res., U.S. 19 (Spring/Summer):66-72.

HEIFETZ, J., B. L. WING, R. P. STONE, P. W. MALECHA, and D. L. COURTNEY.
  2005. Corals of the Aleutian Islands. Fish. Oceanogr. 14 (Suppl. 1):131-138.

HERMAN, D. P., D. G. BURROWS, P. R. WADE, J. W. DURBAN, C. O. MATKIN, R. G. LeDUC, L. G. BARRETT-LENNARD, and M. M. KRAHN.
  2005. Feeding ecology of eastern North Pacific killer whales Orcinus orca from fatty acid, stable isotope, and organochlorine analyses of blubber biopsies. Mar. Ecol. Prog. Ser. 302:275-291.  Online. (.pdf, 165 KB).

HOBBS, R. C., K. L. LAIDRE, D. J. VOS, B. A. MAHONEY, and M. EAGLETON.
  2005. Movements and area use of belugas, Delphinapterus leucas, in a subarctic Alaskan estuary. Arctic 58(4):331-340.

HOFF, G. R., and L. L. BRITT.
  2005. Results of the 2004 Eastern Bering Sea upper continental slope survey of groundfish and invertebrate resources. U.S. Dep. Commer., NOAA Tech. Memo., NMFS-AFSC-156, 276 p.  Online. (.pdf, 13.7MB).

HOFF, G. R., and B. STEVENS.
  2005. Faunal assemblage structure on the Patton Seamount (Gulf of Alaska, USA). Alaska Fish. Res. Bull. 11:27-36.  Online. (.pdf, 1.13 MB).

HOLLAND, D. S.
  2005. Economic analysis of protection of essential fish habitat in Alaskan fisheries: an analysis of research needs. U.S. Dep. Commer., NOAA Tech. Memo., NMFS-AFSC-154, 39 p.  Online. (.pdf, 872 KB).

HOLLOWED, A. B., and J. N. IANELLI.
  2005. Status of Alaska groundfish stocks. Arctic Res., U.S. 19 (Spring/Summer):64-65.

HORNE, J. K., and P. D. WALLINE.
  2005. Spatial and temporal variance of walleye pollock (Theragra chalcogramma) in the eastern Bering Sea. Can. J. Fish. Aquat. Sci. 62:2822-2831.

HUNT, G. L., Jr., and B. A. MEGREY.
  2005. Comparison of the biophysical and trophic characteristics of the Bering and Barents Seas. ICES J. Mar. Sci. 62:1245-1255.

HURST, T. P., and T. A. DUFFY.
  2005. Activity patterns in northern rock sole are mediated by temperature and feeding history. J. Exp. Mar. Biol. Ecol. 325:201–213.

HURST, T. P., M. L. SPENCER, S. M. SOGARD, and A. W. STONER.
  2005. Compensatory growth, energy storage and behavior of juvenile Pacific halibut Hippoglossus stenolepis following a thermally induced growth reduction. Mar. Ecol. Prog. Ser. 293:233-240.  Online. (.pdf, 266 KB).

IANELLI, J.
  2005. Assessment and fisheries management of eastern Bering Sea pollock: Is sustainability luck? Bull. Mar. Sci. 76:321-335.

INCARDONA, J. P., M. G. CARLS, H. TERAOKA, C. A. SLOAN, T. COLLIER, and N. SCHOLZ.
  2005. Aryl hydrocarbon receptor-independent toxicity of weathered crude oil during fish development. Environ. Health Perspect. 113:1755-1762.

JOHNSON, A., G. SALVADOR, J. KENNEY, J. ROBBINS, S. KRAUS, S. LANDRY, and P. CLAPHAM.
  2005. Fishing gear involved in entanglements of right and humpback whales. Mar. Mammal Sci. 21(4):635-645.

JOHNSON, S. W., A. D. NEFF, and J. F. THEDINGA.
  2005. An atlas on the distribution and habitat of common fishes in shallow nearshore waters of southeastern Alaska. U.S. Dep. Commer., NOAA Tech. Memo., NMFS-AFSC-157, 89 p.  Online. (.pdf, 12.56MB).

JURADO-MOLINA, J., P. A. LIVINGSTON, and V. F. GALLUCCI.
  2005. Testing the stability of the suitability coefficients from an eastern Bering Sea multispecies virtual population analysis. ICES J. Mar. Sci. 62:915-924.

JURADO-MOLINA, J., P. A. LIVINGSTON, and J. N. IANELLI.
  2005. Incorporating predation interactions in a statistical catch-at-age model for a predator-prey system in the eastern Bering Sea. Can. J. Fish. Aquat. Sci. 62:1865-1873.

KIMURA, D. K., and D. M. ANDERL.
  2005. Quality control of age data at the Alaska Fisheries Science Center. Mar. Freshwater Res. 56:783-789.

KOLJONEN, M-L., J. J. PELLA, and M. MASUDA.
  2005. Classical individual assignments versus mixture modeling to estimate stock proportions in Atlantic salmon (Salmo salar) catches from DNA microsatellite data. Can. J. Fish. Aquat. Sci. 62:2143–2158.

KOTWICKI, S., and K. L. WEINBERG.
  2005. Estimating capture probability of a survey bottom trawl for Bering Sea skates (Bathyraja spp.) and other fish. Alaska Fish. Res. Bull. 11:135-145.  Online. (.pdf, 818KB).

KOTWICKI, S., T. W. BUCKLEY, T. HONKALEHTO, and G. WALTERS.
  2005. Variation in the distribution of walleye pollock (Theragra chalcogramma) with temperature and implications for seasonal migration. Fish. Bull., U.S. 103:574-587.  Online. (.pdf, 670KB).

LAIDRE, K. L., and M. P. HEIDE-JØRGENSEN.
  2005. Winter feeding intensity of narwhals (Monodon monoceros). Mar. Mammal Sci. 21(1):45-57.

LAIDRE, K. L., and M. P. HEIDE JØRGENSEN.
  2005. Arctic sea ice trends and narwhal vulnerability. Biol. Cons. 121:509-517.

LANDER, M. E., M. HAULENA, F. M. D. GULLAND, and J. T. HARVEY.
  2005. Implantation of subcutaneous radio transmitters in the harbor seal (Phoca vitulina). Mar. Mammal Sci. 21(1):154-161.

LANG, G. M., P. A. LIVINGSTON, and K. A. DODD.
  2005. Groundfish food habits and predation on commercially important prey species in the eastern Bering Sea from 1997 through 2001. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-158, 230 p.  Online. (.pdf, 3.68MB).

LANKSBURY, J. A., J. T. DUFFY-ANDERSON, K. L. MIER, and M. T. WILSON.
  2005. Ichthyoplankton abundance, distribution, and assemblage structure in the Gulf of Alaska during September 2000 and 2001. Estuarine Coastal Shelf Sci. 64:775-785.

LARSON, D. M., and D. K. LEW.
  2005. Measuring the utility of ancillary travel: Results from a study of recreation demand. Transportation Res. (Part A) 39(2-3):237-255.

LAZRUS, H., and J. SEPEZ.
  2005. The NOAA Fisheries Alaska native traditional knowledge database. Practicing Anthropology 27(1):33-37.

LEHNERT, H., L. WATLING, and R. STONE.
  2005. Cladorhiza corona sp. nov. (Porifera: Demospongiae: Cladorhizidae) from the Aleutian Islands (Alaska). J. Mar. Biol. Assoc. U. K. 85:1359-1366.

LEHNERT, H., R. STONE, and W. HEIMLER.
  2005. A new species of Polymastia (Porifera, Hadromerida, Polymastiidae) from the Aleutian Islands, Alaska, USA. Facies 51:49-52.

LEHNERT, H., R. STONE, and W. HEIMLER.
  2005. Two new species of Plakina Schulze, 1880 (Porifera, Plakinidae) from the Aleutian Islands (Alaska, USA). Zootaxa 1068:27-38.

LEW, D. K., and D. M. LARSON.
  2005. Valuing recreation and amenities at San Diego County beaches. Coastal Manage. 33(1):71-86.

LEW, D. K., and D. M. LARSON.
  2005. Accounting for stochastic shadow values of time in discrete-choice recreation demand models. J. Environ. Econ. Manage. 50(2):341-361.

LINK, J. S., W. T. STOCKHAUSEN, and E. T. METHRATTA.
  2005. Food-web theory in marine ecosystems, p. 98-113. In A. Belgrano, U. M. Scharler, J. Dunne and R. E. Ulanowicz (editors), Aquatic Food Webs – An Ecosystem Approach. Oxford University Press, Oxford.

LIVINGSTON, P. A.
  2005. PICES’ role in integrating marine ecosystem research in the North Pacific. Mar. Ecol. Prog. Ser. 300:257-259.

LIVINGSTON, P. A., K. AYDIN, J. BOLDT, J. IANELLI, and J. JURADO-MOLINA.
  2005. A framework for ecosystem impacts assessment using an indicator approach. ICES J. Mar. Sci. 62:592-597.

LOGERWELL, E. A., and L. E. SCHAUFLER.
  2005. New data on proximate composition and energy density of Steller sea lion (Eumetopias jubatus) prey fills seasonal and geographic gaps in existing information. Aquat. Mamm. 31(1):62-82.

LOGERWELL, E. A., K. AYDIN, S. BARBEAUX, E. BROWN, M. E. CONNERS, S. LOWE, J. W. ORR, I. ORTIZ, R. REUTER, and P. SPENCER.
  2005. Geographic patterns in the demersal ichthyofauna of the Aleutian Islands. Fish. Oceanogr. 14 (Suppl. 1):93-112.

LYONS, E. T., and R. L. DeLONG.
  2005. Photomicrographic images of some features of Uncinaria spp. (Nematoda: Ancylostomatidae) from otariid pinnipeds. Parasitol. Res. 95:346-352.

LYONS, E. T., R. L. DeLONG, T. R. SPRAKER, S. R. MELIN, J. L. LAAKE, and S. C. TOLLIVER.
  2005. Seasonal prevalence and intensity of hookworms (Uncinaria spp.) in California sea lion (Zalophus californianus) pups born in 2002 on San Miguel Island, California. Parasitol. Res. 96:127-132.

MACKLIN, A., G. HUFFORD, B. MEGREY, R. SMYTH, and M. McCAMMON.
  2005. NOAA and the Alaska Ocean Observing System. Arctic Res., U.S. 19 (Spring/Summer):41-49.

MALDINI, D., L. MAZZUCA, and S. ATKINSON.
  2005. Odontocete stranding patterns in the main Hawaiian Islands (1937-2002): How do they compare with live animal surveys? Pacific Sci. 59(1):55-67.

MALECHA, P. W., R. P. STONE, and J. HEIFETZ.
  2005. Living substrate in Alaska: distribution, abundance, and species associations, p. 289-299. In P.W. Barnes and J.P. Thomas (editors), Benthic Habitats and the Effects of Fishing. Am. Fish. Soc. Symp. 41, Bethesda, Maryland.

MATE, B., P. DULEY, B. LAGERQUIST, F. WENZEL, A. STIMPERT, and P. CLAPHAM.
  2005. Observations of a female North Atlantic right whale (Eubalaena glacialis) in simultaneous copulation with two males: Supporting evidence for sperm competition. Aquat. Mammals 31(2): 157-160.

McCONNAUGHEY, R. A., S. E. SYRJALA, and C. B. DEW.
  2005. Effects of chronic bottom trawling on the size structure of soft-bottom benthic invertebrates. Am. Fish. Soc. Symp. 41:425-437.

McDERMOTT, S. F., L. W. FRITZ, and V. HAIST.
  2005. Estimating movement and abundance of Atka mackerel (Pleurogrammus monopterygius) with tag–release–recapture data. Fish. Oceanogr. 14 (Suppl. 1):113-130.

MEGREY, B. A., Y-W. LEE, and S. A. MACKLIN.
  2005. Comparative analysis of statistical tools to identify recruitment-environment relationships and forecast recruitment strength. ICES J. Mar. Sci. 62:1256-1269.

MELIN, S.
  2005. Pinniped populations update (Special section: 25 years of biological monitoring (unpaginated)). Alolkoy 17(2):2 p.

MELIN, S. R., R. L. DeLONG, and A. J. ORR.
  2005. The status of the northern fur seal population at San Miguel Island, California, 2002-2003, p. 44-52. In J. W. Testa (editor), Fur seal investigations, 2002-2003. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-151.

MINTE-VERA, C. V., T. A. BRANCH, I. J. STEWART, and M. W. DORN.
  2005. Practical application of meta-analysis results: Avoiding the double use of data. Can. J. Fish. Aquat. Sci. 62:925–929.

MOLES, A., and G. D. MARTY.
  2005. Physiological changes in prickly sculpin (Cottus asper) inhabiting a lake used by jet-propelled watercraft. Bull. Environ. Contam. Toxicol. 74:1151-1158.

MOORE, S.
  2005. Marine mammals in the Bering/Chukchi Sea. Arctic Res., U.S. 19 (Spring/Summer):50-52.

MOORE, S. E.
  2005. Long-term environmental change and marine mammals, p. 137-147. In J. E. I. Reynolds, W. F. Perrin, R. R. Reeves, S. Montgomery & T. J. Ragen (editors), Marine Mammal Research: Conservation Beyond Crisis. Johns Hopkins University Press, Baltimore.

MORGAN, C. A., A. De ROBERTIS, and R. W. ZABEL.
  2005. Columbia River plume fronts. I. Hydrography, zooplankton distribution, and community composition. Mar. Ecol. Prog. Ser. 299:19-31.  Online. (.pdf, 429 KB).

MORI, Y., Y. WATANABE, Y. MITANI, K. SATO, M. F. CAMERON, and Y. NAITO.
  2005. A comparison of prey richness estimates for Weddell seals using diving profiles and image data. Mar. Ecol. Prog. Ser. 295:257-263.  Online. (.pdf, 87 KB).

MOSS, J. H., D. A. BEAUCHAMP, A. D. CROSS, K. W. MYERS, E. V. FARLEY, Jr., J. M. MURPHY, and J. H. HELLE.
  2005. Evidence for size-selective mortality after the first summer of ocean growth by pink salmon. Trans. Am. Fish. Soc. 134:1313-1322.

MUETER, F. J., and B. A. MEGREY.
  2005. Distribution of population-based indicators across multiple taxa to assess the status of Gulf of Alaska and Bering Sea groundfish communities. ICES J. Mar. Sci. 62:344-352.

MUNDY, P. R. (editor).
  2005. The Gulf of Alaska: Biology and Oceanography. University of Alaska Sea Grant Program Report No. AK-SG-05-01, University of Alaska, Fairbanks, AK., 214 p.

MUNDY, P. R., and A. HOLLOWED.
  2005. Fish and Shellfish, p. 81-98. In P. R. Mundy (editor), The Gulf of Alaska: Biology and Oceanography. Alaska Sea Grant Program Report No. AK-SG-05-01, University of Alaska, Fairbanks, AK.

NAPP, J. M., R. R. HOPCROFT, C. T. BAIER, and C. CLARKE.
  2005. Distribution and species-specific egg production of Pseudocalanus in the Gulf of Alaska. J. Plankton Res. 27:415-426.  Online. (.pdf, 586KB).  Full-text version. (HTML).

ORR, J. W., E. H. SINCLAIR, and W. W. WALKER.
  2005. Bassozetus zenkevitchi (Ophidiidae: Teleostei) and Paraliparis paucidens (Liparide:Teleostei): New records for Alaska from the Bering Sea. Northwest. Nat. 86:65-71.

PELLA, J., and M. MASUDA.
  2005. Classical discriminant analysis, classification of individuals, and source population composition of mixtures, p. 517-552. In S. Cadrin, K. Friedland, and J. Waldman (editors), Stock Identification Methods: Applications in Fishery Science. Elsevier Academic Press.

PITCHER, K. W., M. J. REHBERG, G. W. PENDLETON, K. L. RAUM-SURYAN, T. S. GELATT, U. G. SWAIN, and M. F. SIGLER.
  2005. Ontogeny of dive performance in pup and juvenile Steller sea lions in Alaska. Can. J. Zool. 83(9):1214-1231.

PORTER, S. M.
  2005. Temporal and spatial distribution and abundance of flathead sole (Hippoglossoides elassodon) eggs and larvae in the western Gulf of Alaska. Fish. Bull., U.S. 103:648-658.  Online. (.pdf, 2.4MB).

PORTER, S. M., L. CIANNELLI, N. HILLGRUBER, K. M. BAILEY, K-S. CHAN, M. F. CANINO, and L. J. HALDORSON.
  2005. Environmental factors influencing larval walleye pollock Theragra chalcogramma feeding in Alaskan waters. Mar. Ecol. Prog. Ser. 302:207-217.  Online. (.pdf, 272 KB).

REAM, R. R., J. T. STERLING, and T. R. LOUGHLIN.
  2005. Oceanographic features related to northern fur seal migratory movements. Deep-Sea Res. II. 52:823-843.

ROBERSON, N. E., D. K. KIMURA, D. R. GUNDERSON, and A. M. SHIMADA.
  2005. Indirect validation of the age-reading method for Pacific cod (Gadus macrocephalus) using otoliths from marked and recaptured fish. Fish. Bull., U.S. 103:153–160.  Online. (.pdf, 212KB).

RODGVELLER, C. J., W. W. SMOKER, A. K. GRAY, J. E. JOYCE, and A. J. GHARRETT.
  2005. Effects of inbreeding and family origin on variation of size of Chinook salmon Oncorhynchus tshawytscha fry. Alaska Fish. Res. Bull. 11:73-81.  Online. (.pdf, 300KB).

ROOPER, C. N., and J. L. BOLDT.
  2005. Distribution of juvenile Pacific ocean perch Sebastes alutus in the Aleutian Islands in relation to benthic habitat. Alaska Fish. Res. Bull. 11:102-112.  Online. (.pdf, 1.33MB).

ROOPER, C. N., M. ZIMMERMANN, and P. D. SPENCER.
  2005. Using ecologically based relationships to predict distribution of flathead sole Hippoglossoides elassodon in the eastern Bering Sea. Mar. Ecol. Prog. Ser. 290:251-262.  Online. (.pdf, 948 KB).

ROSE, C. S., A. W. STONER, and K. MATTESON.
  2005. Use of high-frequency imaging sonar to observe fish behaviour near baited fishing gears. Fish Res. 76:291-304.

RUGGERONE, G. T., E. FARLEY, J. NIELSEN, and P. HAGEN.
  2005. Seasonal marine growth of Bristol Bay sockeye salmon (Oncorhynchus nerka) in relation to competition with Asian pink salmon (O. gorbuscha) and the 1977 ocean regime shift. Fish. Bull., U.S. 103:355-370.  Online. (.pdf, 494KB).

RUGH, D., and P. WADE.
  2005. Aerial photography of bowhead whales to estimate the size of the Bering-Chukchi-Beaufort population, p. 85-87. In MBC Applied Environmental Sciences, Proceedings of the tenth MMS information transfer meeting and Barrow information update meeting. Anchorage, AK, U.S. Department of the Interior, Minerals Management Service, Alaska OCS Region. (OCS Study MMS-2005-036).

RUGH, D. J., R. C. HOBBS, J. A. LERCZAK, and J. M. BREIWICK.
  2005. Estimates of abundance of the Eastern North Pacific stock of gray whales 1997 to 2002. J. Cetacean Res. Manage. 7(1):1-12.

RUGH, D. J., K. E. W. SHELDEN, C. L. SIMS, B. A . MAHONEY, B. K. SMITH, L. K. LITZKY, and R. C. HOBBS.
  2005. Aerial surveys of belugas in Cook Inlet, Alaska, June 2001, 2002, 2003, and 2004. U.S. Dep Commer., NOAA Tech. Memo., NMFS-AFSC-149, 71 p.  Online.  (.pdf, 4.05MB).

SEPEZ, J.
  2005. Introduction to traditional environmental knowledge in federal natural resource management agencies. Practicing Anthropology 27(1):2-5.

SEPEZ, J. A., B. D. TILT, C. L. PACKAGE, H. M. LAZARUS, and I. VACCARO.
  2005. Community profiles for North Pacific fisheries - Alaska. U.S. Dep. Commer., NOAA Tech. Memo., NMFS-AFSC-160, 552 p.  Online.  (.pdf, 18.2MB).

SHELDEN, K. E. W., S. E. MOORE, J. M. WAITE, P. R. WADE, and D. J. RUGH.
  2005. Historic and current habitat use by North Pacific right whales Eubalaena japonica in the Bering Sea and Gulf of Alaska. Mammal Rev. 35:129-155.

SHELDEN, K. E. W., J. M. WAITE, P. R. WADE, S. MOORE, and D. J. RUGH.
  2005. Historic and current habitat use by North Pacific right whales, Eubalaena japonica, in the Bering Sea and Gulf of Alaska. In T.D. Hooper (editor), Species at risk 2004: Pathways to recovery conference (2004: Victoria B.C.). Proceedings of the Species at Risk 2004: pathways to recovery. Victoria, BC, Canada; 2004., 3 p.  Online  (.pdf, 37KB).

SHOTWELL, S. K., M. D. ADKISON, and D. H. HANSELMAN.
  2005. Accounting for climate variability in forecasting Pacific salmon in data-limited situations. p. 871-900. In G. H. Kruse, V. F. Gallucci, D. E. Hay, R. I. Perry, R. M. Peterman, T. C. Shirley, B. Wilson, and D. Woodby (editors), Fisheries assessment in data-limited situations. Alaska Sea Grant Program Report No. AK-SG-05-02, University of Alaska, Fairbanks, AK.

SIMPKINS, M. A., K. L. LAIDRE, and P. J. HEAGERTY.
  2005. Multivariate regression of satellite-linked dive recorder data: simultaneous analysis of all bins. Mar. Mammal Sci. 21:243-259.

SINCLAIR, E. H., S. E. MOORE, N. A. FRIDAY, T. K. ZEPPELIN, and J. M. WAITE.
  2005. Do patterns of Steller sea lion (Eumetopias jubatus) diet, population trend and cetacean occurrence reflect oceanographic domains from the Alaska Peninsula to the central Aleutian Islands? Fish. Oceanogr. 14 (Suppl. 1):223-242.

SMALL, R. J., L. F. LOWRY, J. M. Ver HOEF, K. J. FROST, R. A. DeLONG, and M. J. REHBERG.
  2005. Differential movements by harbor seal pups in contrasting Alaska environments. Mar. Mammal Sci. 21(4):671-694.

SOMERTON, D. A., and C. T. GLENDHILL (editors).
  2005. Report of the National Marine Fisheries Service workshop on underwater video analysis. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-F/SPO-68, 69 p.  Online. (.pdf, 756KB).

SPENCER, P. D., and J. N. IANELLI.
  2005. Application of a Kalman filter to a multispecies stock complex, p. 613-634. In G. H. Kruse, V. F. Gallucci, D. E. Hay, R. I. Perry, R. M. Peterman, T. C. Shirley, B. Wilson, and D. Woodby (editors), Fisheries assessment in data-limited situations. Alaska Sea Grant Program Report No. AK-SG-05-02, University of Alaska, Fairbanks, AK.

SPENCER, M. L., A. W. STONER, C. H. RYER, and J. E. MUNK.
  2005. A towed camera sled for estimating abundance of juvenile flatfishes and habitat characteristics: Comparison with beam trawls and divers. Estuar. Coast. Shelf Sci. 64:497-503.

SPIES, I. B., S. LOWE, Y. HONG, and M. F. CANINO.
  2005. Development and characterization of seven novel di-, tri-, and tetranucleotide microsatellite markers in Atka mackerel (Pleurogrammus monopterygius). Mol. Ecol. Notes. 5:469-471.

STAFFORD, K. M., and S. E. MOORE.
  2005. Atypical calling by a blue whale in the Gulf of Alaska (L). J. Acoust. Soc. Am. 117(5):2724-2727.

STAFFORD, K. M., S. E. MOORE, and C. G. FOX.
  2005. Diel variation in blue whale calls recorded in the eastern tropical Pacific. Anim. Behav. 69:951-958.

STEVENS, B. G., and K. M. SWINEY.
  2005. Post-settlement effects of habitat type and predator size on cannibalism of glaucothoe and juveniles of red king crab Paralithodes camtschaticus. J. Exp. Mar. Biol. Ecol. 321:1-11.

STEVENSON, D. E., and M. E. ANDERSON.
  2005. Bothrocara nyx: a new species of eelpout (Perciformes: Zoarcidae) from the Bering Sea. Zootaxa 1094:53-64.

STEVENSON, D. E., and A. C. MATARESE.
  2005. The ronquils: a review of the North Pacific fish family Bathymasteridae (Actinopterygii: Perciformes: Zoarcoidei). Proc. Biol. Soc. Washington. 118(2):367-406.

STEVENSON, D. E., and J. W. ORR.
  2005. New records of two deepwater skate species from the eastern Bering Sea. Northwest. Nat. 86:71-81.

STONE, R. P.
  2005. Exploring deep-sea corals on the edge - Alaska's Aleutian Islands. Current 21:18-21.

STONE, R. P., M. M. MASUDA, and P. W. MALECHA.
  2005. Effects of bottom trawling on soft-sediment epibenthic communities in the Gulf of Alaska, p. 461-475. In P.W. Barnes and J.P. Thomas (editors), Benthic Habitats and the Effects of Fishing. Am. Fish. Soc. Symp. 41, Bethesda, Maryland.

STONER, A. W., C. H. RYER, and R. A. McCONNAUGHEY.
  2005. Ecological consequences of lost habitat structure for commercially significant flatfishes: Habitat choice and vulnerability to predators (Abstract), p. 602-603. In P.W. Barnes and J.P. Thomas (editors), Benthic Habitats and the Effects of Fishing. Am. Fish. Soc. Symp. 41. Bethesda, Maryland.

SWARTZMAN, G., B. HICKEY, P. M. KOSRO, and C. WILSON.
  2005. Poleward and equatorward currents in the Pacific Eastern Boundary Current in summer 1995 and 1998 and their relationship to the distribution of euphausiids. Deep-Sea Res. II 52:73-88.

SWARTZMAN, G., A. WINTER, K. COYLE, R. BRODEUR, T. BUCKLEY, L. CIANNELLI, G. HUNT, J. IANELLI, and A. MACKLIN.
  2005. Relationship of age-0 pollock abundance and distribution around the Pribilof Islands, to other shelf regions of the eastern Bering Sea. Fish. Res. 74:273-287.

TAYLOR, M. K., J. LAAKE, P. D. McLOUGHLIN, E. W. BORN, H. D. CLUFF, S. H. FERGUSON, A. ROSING-ASVID, R. SCHWEINSBURG, and F. MESSIER.
  2005. Demography and viability of a hunted population of polar bears. Arctic 58(2):203-214.

TEMPLIN, W. D., R. L. WILMOT, C. M. GUTHRIE III, and L. W. SEEB.
  2005. United States and Canadian chinook salmon populations in the Yukon River can be segregated based on genetic characteristics. Alaska Fish. Res. Bull. 11:44-60.  Online. (.pdf, 416KB).

TESTA, J. W. (editor).
  2005. Fur seal investigations, 2002-2003. U.S. Dep. Commer., NOAA Tech. Memo., NMFS-AFSC-151, 72 p.  Online. (.pdf, 3.60MB).

TESTA, J. W.
  2005. Introduction, p. 1-7. In J. W. Testa (editor), Fur seal investigations, 2002-2003. U.S. Dep. Commer., NOAA Tech. Memo., NMFS-AFSC-151.

THEDINGA, J. F., M. G. CARLS, J. M. MASELKO, R. A. HEINTZ, and S. D. RICE.
  2005. Resistance of naturally spawned pink salmon eggs to mechanical shock. Alaska Fish. Res. Bull. 11:37-43.  Online. (.pdf, 1.33MB).

TOWELL, R. G., and R. R. REAM.
  2005. Mass, length, and sex ratios of northern fur seal pups on the Pribilof Islands, 2002, p. 28-43. In J. W. Testa (editor), Fur seal investigations, 2002-2003. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-151.

TRUMBLE, S. J., and M. A. CASTELLINI.
  2005. Diet mixing in an aquatic carnivore, the harbour seal. Can. J. Zool. 83(6):851-859.

VOS, D. J. and K. E. W. SHELDEN.
  2005. Unusual mortality in the depleted Cook Inlet beluga population. Northwest. Nat. 86(2):59-65.

WILDERBUER, T., B. LEAMAN, C. I. ZHANG, J. FARGO, and L. PAUL.
  2005. Pacific flatfish fisheries, p. 272-291. In R. N. Gibson (editor), Flatfishes-Biology and Exploitation. Blackwell Science Ltd, Oxford, UK.

WILSON, M. T., A. L. BROWN, and K. L. MIER.
  2005. Geographic variation among age-0 walleye pollock (Theragra chalcogramma): Evidence of mesoscale variation in nursery quality? Fish. Bull., U.S. 103:207-218.  Online. (.pdf, 472KB).

WOMBLE, J. N., M. F. WILLSON, M. F. SIGLER, B. P. KELLY, and G. R. VanBLARICOM.
  2005. Distribution of Steller sea lions Eumetopias jubatus in relation to spring-spawning fish in SE Alaska. Mar. Ecol. Prog. Ser. 294:271-282.  Online. (.pdf, 345 KB).

YANG, M-S., K. AYDIN, A. GREIG, G. LANG, and P. LIVINGSTON.
  2005.  Historical review of capelin (Mallotus villosus) consumption in the Gulf of Alaska and eastern Bering Sea. U.S. Dep. Commer, NOAA Tech. Memo., NMFS-AFSC-155, 89 p.  Online. (.pdf, 8.11MB).

YORK, A. E., R. G. TOWELL, R. R. REAM, and C. W. FOWLER.
  2005. Population assessment, Pribilof Islands, Alaska, 2002-2003, p. 8-28. In J. W. Testa (editor), Fur seal investigations, 2002-2003. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-151.


Up