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Publications - 2004
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Campos, I. and Davenport, J.W. Numerical investigation of the 3D
Hubbard model on a Linux cluster. J. Computational Physics 196: 88-101
(2004).
BNL-72383-2004-JA.
Deng, Y., Glimm, J., Davenport, J., Cai, X., and Santos, E. Performance
models on QCDOC for molecular dynamics with Coulomb potentials. Int.
J. High Performance Computing Applications 18(2): 183-198 (2004). Stony Brook
University Preprint No. SUNYSB-AMS-00-04. BNL-71261-2003-JA. PDF
Format.
Drozhdin, A.I., Mokhov, N.V., Still, D.A., and Samulyak, R. Beam-Induced
Damage to the Tevatron Collimators: Analysis and Dynamic Modeling of
Beam Loss, Energy Deposition and Ablation. Fermilab Report No. FERMILAB-FN-751,
2004.
Dutta, S., Glimm, J., Grove, J.W., Sharp, D.H.,
and Zhang, Y. Spherical Richtmyer-Meshkov instability for axisymmetric
flow. Mathematics and Computers in Simulations 65: 417-430 (2004).
Stony Brook University Preprint No. SUNYSB-AMS-03-13.
Dutta, S., Glimm, J., Grove, J.W., Sharp, D.H., and Zhang, Y. Error
comparison in tracked and untracked spherical simulations.
Computers and Mathematics with Applications 48: 1733-1747 (2004).
Stony Brook University Preprint No. SUNYSB-AMS-03-10 and LANL Report
No. LA-UR-03-2920.
Efstathiadis, E. et al. Proceedings of the Computing in High Energy
Physics (CHEP) 2004 conference, Interlaken, Switzerland, Sept. 26 -
Oct. 1st, 2004 (to be published).
Glimm, J., Jin, H., and Zhang, Y. Front tracking for multiphase fluid
mixing. In Computational Methods in Multiphase Flow II, A.A.
Mammoli and C.A. Brebbia, Editors, pp. 13-22, WIT Press, Southampton,
UK, 2004.
Glimm, J., Li, X.-L., and Xu, Z. Front tracking algorithm
using adaptively refined meshes. Proc. 2003 Chicago Workshop
on Adaptive Mesh Refinement Methods. Lecture Notes in
Computational Science and Engineering, ISSN: 1439-7358 (2004).
Glimm, J., Grove, J.W., Kang, Y., Lee, T., Li, X., Sharp, D.H., Yu,
Y., Ye, K., and Zhao, M. Statistical Riemann problems and a
composition law for errors in numerical solutions of shock physics
problems. SIAM J. Sci. Computing 26(2): 666-697 (2004).
BNL-73953-2005-JA. Stony Brook University Preprint No.
SUNYSB-AMS-03-11. LANL Report No. LA-UR-03-2921.
Glimm, J., Hou, S., Lee, Y., Sharp, D., and Ye, K. Sources of
uncertainty and error in the simulation of flow in porous media.
Comp. and Applied Mathematics 23: 109-120 (2004). Stony Brook
University Preprint No. SUNYSB-AMS-03-08. LANL Reprint No.
LA-UR-03-2328.
Jaeger, J., Blagov, M., Kosman, D., Kozlov, K.N., Manu, Myasnikova,
E., Surkova, S., Vanario-Alonso, C.E., Samsonova, M., Sharp, D.H.,
and Reinitz, J. Dynamical analysis of regulatory interactions
in the gap gene system of drosophila melanogaster.
Genetics 167: 1721-1737 (2004).
Jaeger, J., Surkova, S., Blagov, M., Janssens, H., Kosman, D.,
Kozlov, K.N., Manu, Myasnikova, E., Vanario-Alonso, C.E., Samsonova,
M., Sharp, D.H., and Reinitz, J. Dynamic control of positional
information in the early drosophila embryo. Nature 430:
368-371 (2004).
Jin, H., Liu, X.F., Lu, T., Cheng, B., Glimm, J., and Sharp, D.H.
Rayleigh-Taylor mixing rates for compressible flow. Phys. Fluids 17:
1-10 (2004). Stony
Brook University Preprint No. SUNYSB-AMS-04-06; LANL Report No. LA-UR-04-1384.
BNL-73848-2005-JA.
Johann, D.J., McGuigan, M.D., Tomov, S., Fusaro, V.A., Ross, S.,
Conrads, T.P., Veenstra, T.D., Fishman, D.A., Whiteley, G.R.,
Petricoin, E.F., and Liotta, L.A. Novel approaches to visualization
and data mining reveal diagnostic information in the low amplitude
region of serum mass spectra from ovarian cancer patients. Disease
Markers 19: 197-207 (2004).
Johann, D.J., McGuigan, M.D., Tomov, S., Blum, E., Whiteley, G.R.,
Petricoin, E.F., and Liotta, L.A. Toward a Systems Biology Software
Toolkit, 17th IEEE Symposium on Computer-Based Medical Systems, June
2004.
Johann, D.J., McGuigan, M.D., Patel, A.R., Tomov, S., Ross, S., Conrads,
T.P., Veenstra, T.D., Fishman, D.A., Whiteley, G.R., Petricoin, E.F., and
Liotta, L.A. Clinical proteomics and biomarker discovery. Annals of the New
York Academy of Sciences 1022: 295-306 (June 2004).
Lee, T., Yu, Y., Zhao, M., Glimm, J., Li, X., and Ye, K. Error analysis
of composite shock interaction problems. Conference Proc. Ninth ASCE
Joint Specialty Conference on Probabilistic Mechanics and Structural
Reliability, submitted. Stony Brook University Preprint No. SUNYSB-AMS-04-08.
BNL-72335-2004-CP. PDF
Format.
Moges, M., Yu, D., and Robertazzi, T.G. Grid scheduling
divisible loads from multiple sources via linear programming.
Proc. IASTED International Conference on Parallel and Distributed
Computing and Systems (PDCS 2004), Cambridge, MA, Nov. 2004.
Samulyak, R. and Prykarpatskyy, Y. Richtmyer-Meshkov instability in
liquid metal flows: influence of cavitation and magnetic fields. Mathematics
and Computers in Simulations 65: 431-446 (2004).
Samulyak, R. , Lu, T., and Prykarpatskyy, Y. Direct and homogeneous
numerical approaches to multiphase flows. Lecture Notes in Comp. Sci.
3039: 653-660 (2004). BNL-74858-2005-BC.
Sivakumar, V., Bharadwaj, V., Yu, D., and Robertazzi, T.G.
Design and analysis of a dynamic scheduling strategy with resource
estimation for large-scale grid systems. Proc. 5th IEEE/ACM
International Workshop on Grids 2004, Pittsburgh, PA, Nov. 2004.
Tomov, S., Bennett, R., McGuigan, M., Peskin, A., Smith, G., and
Spiletic, J. Application of interactive parallel visualization for
commodity-based clusters using visualization APIs. Computers &
Graphics 28(2): 273-278 (2004).
Wu, L., Zhu, Y., Vogt, T. Su, H., Davenport, J. W., and Tafto, J.
Valence electron-distribution in MgB2 by accurate
diffraction measurements and first-principles calculations. Phys.
Rev. B 69: 064501 (2004).
Zheng, J.-C. and Davenport, J.W. Ferromagnetism and stability of half-metallic
MnSb and MnBi in the strained zinc-blende structure: Predictions from
full potential and pseudopotential calculations. Phys. Rev. B 69: 144415-1
- 144445-9 (2004). BNL-72352-2004-JA.
Zhu, W., Volkow, N.D., Ma, Y., Fowler, J.S., and Wang, G-J.
Relationships of ethanol induced changes in brain regional
metabolism and motor, behavioral and cognitive functions. Alcohol
and Alcoholism 39(1): 53-58 (2004).
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