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Empirical Studies in Support of a Pink Shrimp, Farfantepenaeus duorarum, Simulation Model for Florida Bay

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Metadata:


Identification_Information:
Citation:
Citation_Information:
Originator:
Michael B. Robblee

Clinton Hittle

Publication_Date: 2009
Title:
Empirical Studies in Support of a Pink Shrimp, Farfantepenaeus duorarum, Simulation Model for Florida Bay
Geospatial_Data_Presentation_Form: text files
Online_Linkage:
<http://sofia.usgs.gov/projects/index.php?project_url=emp_studies>
Description:
Abstract:
A Tortugas/Florida Bay pink shrimp simulation model has been identified as a priority need in CERP by the South Florida Water Management District, NOAA, NPS and USGS. This model has been under development through the collaboration of a team of NMFS, USGS and University of Miami (UM) researchers since 1997. To date this project has been funded by NOAA’s Coastal Oceans Program, DOI’s Critical Ecosystem Studies Initiative and by USGS base funds. The purpose of the model is to assist in designing and refining restoration alternatives by predicting their impact on production of pink shrimp in Florida Bay and on shrimp recruitment from Florida Bay to the Tortugas fishery.

A series of monitoring or empirical studies either have been completed or are ongoing. NMFS continues to monitor Tortugas pink shrimp harvest and develop the simulation model and has completed pink shrimp salinity/temperature tolerance experiments. USGS is continuing to monitor pink shrimp distribution and abundance in relation to environmental conditions and habitat in Florida Bay and to measure water flow in order to estimate postlarval transport within the Bay. With UM a critical collaborative study to identify and quantify the seasonality and magnitude of pathways of postlarval immigration to Florida Bay is continuing. Statistical studies of these and other data are ongoing relating pink shrimp to salinity, temperature and habitat in Florida Bay.

Purpose:
Florida Bay lies downstream of the Everglades ecosystem. Perceived deterioration of the Everglades over the last century - and Florida Bay since the mid-1980’s - is generally viewed as linked to changes in freshwater flow and water quality associated with water management in South Florida. A pink shrimp simulation model is being developed to assist in designing and refining restoration alternatives by predicting their impact on production of pink shrimp in Florida Bay and on shrimp recruitment from Florida Bay to the Tortugas fishery.

The pink shrimp is a good indicator of the health and productivity of the Bay. The effect of salinity and temperature on pink shrimp growth and survivorship and of habitat on juvenile density provide a basis for predicting the abundance of pink shrimp juveniles in Florida Bay and thus the magnitude of recruitment to the Tortugas fishery. A landscape model is needed to express pink shrimp performance measures as functions of spatially complex factors acting across the Bay. Florida Bay is a complex shallow water ecosystem with distinct zones of different physical and biological characteristics (Fourqurean and Robblee 1999) that differ in their potential to support pink shrimp. The influence of upstream water management on pink shrimp recruitment from Florida Bay is expected to express itself principally through changes in salinity and seagrass habitat associated with changes in freshwater inflow. Predictions of the effect of these changes on the Bay’s productive capacity require consideration not only of the resulting salinity and seagrass changes but also the resulting change in the area of overlap of these factors favorable to the pink shrimp (Browder and Moore 1981; Browder 1991). Critical long-term databases exist for pink shrimp that are suitable for developing empirical relationships and baselines.

Time_Period_of_Content:
Time_Period_Information:
Range_of_Dates/Times:
Beginning_Date: 199910
Ending_Date: 20040930
Currentness_Reference: ground condition
Status:
Progress: Complete
Maintenance_and_Update_Frequency: Unknown
Spatial_Domain:
Description_of_Geographic_Extent: Florida Bay
Bounding_Coordinates:
West_Bounding_Coordinate: -81.25
East_Bounding_Coordinate: -80.375
North_Bounding_Coordinate: 25.25
South_Bounding_Coordinate: 24.75
Keywords:
Theme:
Theme_Keyword_Thesaurus: none
Theme_Keyword: biology
Theme_Keyword: salinity
Theme_Keyword: model
Theme_Keyword: hydrology
Theme_Keyword: pink shrimp
Theme:
Theme_Keyword_Thesaurus: ISO 19115 Topic Category
Theme_Keyword: biota
Theme_Keyword: environment
Theme_Keyword: inlandWaters
Theme_Keyword: 002
Theme_Keyword: 007
Theme_Keyword: 012
Place:
Place_Keyword_Thesaurus:
Department of Commerce, 1995, Countries, Dependencies, Areas of Special Sovereignty, and Their Principal Administrative Divisions, Federal Information Processing Standard (FIPS) 10-4, Washington, DC, National Institute of Standards and Technology
Place_Keyword: United States
Place_Keyword: US
Place:
Place_Keyword_Thesaurus:
U.S. Department of Commerce, 1987, Codes for the identification of the States, the District of Columbia and the outlying areas of the United States, and associated areas (Federal Information Processing Standard 5-2): Washington, DC, NIST
Place_Keyword: Florida
Place_Keyword: FL
Place:
Place_Keyword_Thesaurus:
Department of Commerce, 1990, Counties and Equivalent Entities of the United States, Its Possessions, and Associated Areas, FIPS 6-3, Washington, DC, National Institute of Standards and Technology
Place_Keyword: Monroe County
Place:
Place_Keyword_Thesaurus: USGS Geographic Names Information System
Place_Keyword: Florida Bay
Place:
Place_Keyword_Thesaurus: none
Place_Keyword: Johnson Key Basin
Place_Keyword: Florida Keys
Taxonomy:
Keywords/Taxon:
Taxonomic_Keyword_Thesaurus: none
Taxonomic_Keywords: animals
Taxonomic_Keywords: single species
Taxonomic_Keywords: shrimp
Taxonomic_System:
Classification_System/Authority:
Classification_System_Citation:
Citation_Information:
Originator:
U.S. Department of Agriculture - Agricultural Research Service (ARS)

U.S. Department of Agriculture - Natural Resources Conservation Service (NRCS) Department of the Interior - U.S. Geological Survey Department of Commerce - National Oceanic and Atmospheric Administration (NOAA) Environmental Protection Agency (EPA) Smithsonian Institution - National Museum of Natural History (NMNH)

Publication_Date: 2000
Title: Integrated Taxonomic Information System (ITIS)
Geospatial_Data_Presentation_Form: Database
Other_Citation_Details:
Retrieved from the Integrated Taxonomic Information System on-line database, <http://www.itis.gov>.
Online_Linkage: <http://www.itis.gov>
Taxonomic_Procedures:
All fish and pink shrimp caught in throw-trap collections in Johnson Key Basin will be sorted in the laboratory and identified to species and enumerated. Pink shrimp postlarvae caught in channel nets at specific locations in Florida Bay will be sorted from the sample, identified, and preserved in 95% ethanol.
General_Taxonomic_Coverage: shrimp are identified to species
Taxonomic_Classification:
Taxon_Rank_Name: Kingdom
Taxon_Rank_Value: Animalia
Applicable_Common_Name: animals
Taxonomic_Classification:
Taxon_Rank_Name: Phylum
Taxon_Rank_Value: Arthropoda
Applicable_Common_Name: arthropods
Taxonomic_Classification:
Taxon_Rank_Name: Subphylum
Taxon_Rank_Value: Crustacea
Applicable_Common_Name: crustaceans
Taxonomic_Classification:
Taxon_Rank_Name: Class
Taxon_Rank_Value: Malacostraca
Taxonomic_Classification:
Taxon_Rank_Name: Subclass
Taxon_Rank_Value: Eumalacostraca
Taxonomic_Classification:
Taxon_Rank_Name: Superorder
Taxon_Rank_Value: Eucarida
Applicable_Common_Name: lagosta
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Decapoda
Applicable_Common_Name: crabs
Applicable_Common_Name: caryfishes
Applicable_Common_Name: lobsters
Applicable_Common_Name: prawns
Applicable_Common_Name: shrimp
Taxonomic_Classification:
Taxon_Rank_Name: Suborder
Taxon_Rank_Value: Dendrobranchiata
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Penaeidae
Applicable_Common_Name: penaeid shrimps
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Farfantepenaeus
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Farfantepenaeus duorarum
Applicable_Common_Name: pink shrimp
Access_Constraints: none
Use_Constraints: none
Point_of_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Michael Robblee
Contact_Organization: U.S. Geological Survey
Contact_Address:
Address_Type: mailing address
Address:
c/o South Florida Natural Resources Center, Everglades National Park

40001 State Road 9336

City: Homestead
State_or_Province: FL
Postal_Code: 33034
Country: USA
Contact_Voice_Telephone: 305 242-7832
Contact_Facsimile_Telephone: 305 242-7836
Contact_Electronic_Mail_Address: mike_robblee@usgs.gov
Data_Set_Credit:
Project personnel include Andre Daniels, Vin DiFrenna, Joel Conlin, George Gallegos, Joan Browder, Maria Criales, and Tom Jackson
Native_Data_Set_Environment: ASCII text files
Cross_Reference:
Citation_Information:
Originator:
Fourqurean, J. W.

Robblee, M. B.

Publication_Date: 1999
Title: Florida Bay: a history of recent ecological changes
Geospatial_Data_Presentation_Form: report
Series_Information:
Series_Name: Estuaries
Issue_Identification: v. 22, n.2B
Publication_Information:
Publication_Place: New York
Publisher: Springer New York
Online_Linkage:
<http://www.springerlink.com/content/vh24236250573557/fulltext.pdf>
Cross_Reference:
Citation_Information:
Originator: Browder, J. A.
Publication_Date: 1985
Title:
Relationship between pink shrimp production on the Tortugas and water flow patterns in the Florida Everglades
Geospatial_Data_Presentation_Form: report
Series_Information:
Series_Name: Bulletin of Marine Science
Issue_Identification: 37
Publication_Information:
Publication_Place: Coral Gables, FL
Publisher: University of Florida Press
Cross_Reference:
Citation_Information:
Originator:
Browder, J. A.

Restrepo, V. R.; Rice, J. K.; Robblee, M. B.; Zein-Eldin, A.

Publication_Date: 1999
Title:
Environmental influences on potential recruitment of pink shrimp, Farfantepenaeus duoraram, from Florida Bay nursery grounds
Geospatial_Data_Presentation_Form: report
Series_Information:
Series_Name: Estuaries
Issue_Identification: v. 22, n. 2B
Publication_Information:
Publication_Place: New York, New York
Publisher: Springer New York
Online_Linkage:
<http://www.springerlink.com/content/j16867808145740n/fulltext.pdf>
Cross_Reference:
Citation_Information:
Originator:
Browder, J. A.

Moore, D.

Publication_Date: 1981
Title:
A new approach to determining the quantative relationship between fishery production and the flow of fresh water to estuaries
Geospatial_Data_Presentation_Form: report
Series_Information:
Series_Name:
Proceedings, National Symposium on Freshwater Inflow to Estuaries
Issue_Identification: Vol. 1, FWS/OBS-81/04
Publication_Information:
Publication_Place: Washington, DC
Publisher: U.S. Fish and Wildlife Service
Other_Citation_Details: R. Cross and D. Williams, editors
Cross_Reference:
Citation_Information:
Originator: Browder, J. A.
Publication_Date: 1991
Title:
Watershed management and the importance of freshwater flow to estuaries
Geospatial_Data_Presentation_Form: report
Series_Information:
Series_Name: Proceedings, Tampa Bay Area Scientific Information Symposium
Issue_Identification: none
Publication_Information:
Publication_Place: Tampa, FL
Publisher: unknown
Other_Citation_Details: S. F. Treat and P. A. Clark, editors

Data_Quality_Information:
Logical_Consistency_Report: not applicable
Completeness_Report: not available
Lineage:
Process_Step:
Process_Description:
Critical long-term databases exist for pink shrimp that are suitable for developing empirical relationships and baselines. NOAA has collected and maintained catch and effort data on this fishery since 1960. The National Park Service and USGS have monitored juvenile shrimp abundance in relation to physical conditions of salinity and temperature and seagrass habitat, principally in western Florida Bay, since 1981.

Analysis of this data set will provide the pink shrimp simulation model with seasonal timing, size frequency data as well as abundance and size of juvenile pink shrimp in relation to bank, basin and near-key habitats seagrass cover. Specific objectives include:

1. Quantify density and size of juvenile pink shrimp in relation to bank, basin and near-key habitat in Johnson Key Basin, western Florida Bay. 2. Implement Braun Blanquet cover estimation as a means of associating pink shrimp abundance to seagrass and algal habitat. 3. Evaluate the existing benthic database in order to develop a monitoring protocol for assessing juvenile pink shrimp abundance and distribution in Florida Bay in relation to changes in salinity.

Using established methods nine stations (3 bank, 3 basin, 3 near-key habitat) in Johnson Key Basin will be sampled on a six-week interval for a total of 9 collections during FY2003. A one m2 throw-trap is used to quantitatively collect seagrass associated fish and invertebrates including the pink shrimp. Each throw-trap is swept three times to remove organisms. Four throw-trap samples are collected at each station as well as a suite of environmental and habitat variables. Previously habitat estimates have been made based on biomass estimates of seagrass and algae associated with throw-trap collections. Braun Blanquet is a categorical cover estimate technique currently used in seagrass monitoring programs in Florida Bay and the Florida Keys. In the laboratory samples will be sorted, all fish and shrimp (caridean and pink shrimp) will be identified to species and enumerated. Data will be stored in the Everglades National Park Oracle Database.

Process_Date: Unknown
Process_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Michael Robblee
Contact_Organization: U.S. Geological Survey
Contact_Address:
Address_Type: mailing address
Address:
c/o South Florida Natural Resources Center, Everglades National Park

40001 State Road 9336

City: Homestead
State_or_Province: FL
Postal_Code: 33034
Country: USA
Contact_Voice_Telephone: 305 242-7832
Contact_Facsimile_Telephone: 305 242-7836
Contact_Electronic_Mail_Address: mike_robblee@usgs.gov
Process_Step:
Process_Description:
The timing, distribution and magnitude of postlarval shrimp immigration to Florida Bay were identified as critical information needs required for development of the pink shrimp simulation model. To address these needs a field study is ongoing to estimate and compare monthly postlarval immigration to Florida Bay through six defined channels: two from the Gulf of Mexico (Sandy Key, Middle Ground) into western Florida Bay, two from the Atlantic Ocean (Whale Harbor Channel, Indian Key Channel) through the Florida Keys into southwestern and central Florida Bay, and two interior channels that connect Florida Bay sub basins, Conchie Channel near Flamingo in western Florida Bay and Panhandle Key Cut in south central Florida Bay. Sampling postlarval pink shrimp at these six stations involves the closely coordinated efforts of NOAA, responsible for sampling the Florida Keys stations, and UM and USGS personnel with responsibility for sampling the western Florida Bay stations. Specific objectives include:

1. Quantify the seasonality and magnitude of postlarval pink shrimp immigration to Florida Bay. 2. Compare timing and magnitude of postlarval pink shrimp immigration from the Gulf of Mexico and the Atlantic Ocean. 3. Assess accessibility of inner Florida Bay to postlarval pink shrimp by comparing the timing and magnitude of Gulf of Mexico stations to Conchie Channel; of Atlantic Ocean stations to Panhandle Key Cut. 4. Assess sampling protocols by comparing postlarvae catch in relation to tidal phase and depth. 5. Participate in the development of a transport module for the pink shrimp simulation model.

Post larval pink shrimp sampling was initiated in January 2000. Channel nets (0.75 m2 opening, 1-mm mesh net, 500-micron mesh in the cod end) are used. The nets are attached to fixed moorings in the evening and samples are collected the following morning having passively collected postlarvae over night. The top of the channel net is set at .5 meter deep. At present paired channel nets sample six channels on two nights of the new moon; thus, four samples are obtained from each site each month for a total of 24. Pink shrimp postlarvae are sorted from the sample, identified, and preserved in 95% ethanol. The raw catch in each sample is standardized to density per 1,000 m3 of water filtered. Mean monthly density is calculated as the average over the two sampling nights. Densities are tested for normality and homogeneity of variance. Two experiments will be conducted to evaluate the current sampling methods. The present method of drifting the channel nets over night will be evaluated by sampling on a two-hour interval with the object of understanding when post larvae are most abundant. A second experiment will evaluate the relationship of depth and postlarval pink shrimp abundance by comparing catch in nets drifted at the surface, .5 meter and 1 meter. Experimental results will be used to aid in interpretation of catches or alternatively to modify sampling protocols.

Process_Date: Unknown
Process_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Michael Robblee
Contact_Organization: U.S. Geological Survey
Contact_Address:
Address_Type: mailing address
Address:
c/o South Florida Natural Resources Center, Everglades National Park

40001 State Road 9336

City: Homestead
State_or_Province: FL
Postal_Code: 33034
Country: USA
Contact_Voice_Telephone: 305 242-7832
Contact_Facsimile_Telephone: 305 242-7836
Contact_Electronic_Mail_Address: mike_robblee@usgs.gov
Process_Step:
Process_Description:
In October of 2001, a study began to determine the volume transport at each of the six stations where postlarvae are being sampled. Acoustic Doppler technology has been installed at the four defined channels connecting Florida Bay with the Gulf of Mexico (Sandy, Middle Ground) and the Atlantic Ocean (Whale Harbor, Indian Key) and the two interior channels Conchie, Panhandle) that connect to Florida Bay interior sub basins where monthly postlarval sampling occurs. These estimates of volume transport facilitate the direct comparison of the six stations being sampled for postlarvae and are essential to an assessment of the relative importance of the two known pathways of larval immigration into Florida Bay - west from the Gulf of Mexico and from the Atlantic Ocean through passages in the Florida Keys. These continuous measurements are also essential in developing a larval transport module for the pink shrimp simulation model. A significant additional benefit of the data being collected is that it will be very useful in the development of a Florida Bay circulation model, a high priority of CERP. Specific objectives include:

1. Estimate volume transport in the six channels being sampled for postlarvae. 2. Construct rating curves at each station under a variety of tidal flow conditions in order to improve volume transport estimates. 3. Compare volume transport among the six stations in a comparison of postlarval immigration into Florida Bay. 4. Participate in the development of a transport module for the pink shrimp simulation model.

Measurements of flow, stage, and salinity will continue in FY 2003 in the six channels being sampled for post larvae. In collaboration with Dr. Joan Browder of NOAA these data will be applied to the construction of the larval transport module for the pink shrimp simulation module. Methods developed to date and in other studies will continue to be employed. Acoustic Doppler Velocity Meters (ADVM) have been installed at the instrumented sites and are used to measure continuous (15- minute) water velocity. A boat-mounted Acoustic Doppler Current Profiler (ADCP) is used to calculate total discharge along a transect of the channels during inspections. The ADCP also measures water depth, boat speed, and direction of boat movement using acoustic reflections from the streambed. Discharge and flow direction are both calculated from data collected with the ADCP. The mean velocity for the creek section is calculated by dividing the total discharge measured with the ADCP by the cross-sectional area corresponding to the water level at the time of the discharge measurement. The cross-sectional area is computed by using site-specific stage-area ratings. A velocity rating between the mean ADCP velocity and the in situ ADVM velocity is calculated by regression analysis. This rating equation is then used to calculate continous discharge using the velocity data. Stage measurements are made acoustically and through water pressure in the ADVM and Salinity instrumentation respectively. Stage is used to define the cross-sectional area over which flow measurements are made, and are used in the regression analysis between flow and stage. Salinity measured near the surface and bottom of each channel to quantify the vertical stratification present at each site, which could be detrimental to acoustic signals. Additionally, temperature is measured to monitor possible vertical temperature gradients that could be detrimental to acoustic signals and as a necessary parameter to calculate salinity from conductivity.

Process_Date: 2004
Process_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Mark Zucker
Contact_Organization: U.S. Geological Survey
Contact_Address:
Address_Type: mailing and physical address
Address: 3110 SW 9th Ave.
City: Ft. Lauderdale
State_or_Province: FL
Postal_Code: 33315
Country: USA
Contact_Voice_Telephone: 954 377-5952
Contact_Facsimile_Telephone: 954 377-5901
Contact_Electronic_Mail_Address: mzucker@usgs.gov

Spatial_Data_Organization_Information:
Indirect_Spatial_Reference: Florida Bay

Distribution_Information:
Distributor:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Heather Henkel
Contact_Organization: U.S. Geological Survey
Contact_Address:
Address_Type: mailing and physical address
Address: 600 Fourth Street South
City: St. Petersburg
State_or_Province: FL
Postal_Code: 33701
Country: USA
Contact_Voice_Telephone: 727 803-8747 ext 3028
Contact_Facsimile_Telephone: 727 803-2030
Contact_Electronic_Mail_Address: sofia-metadata@usgs.gov
Resource_Description: Hydrology Data
Distribution_Liability: The data have no explicit or implied guarantees.
Standard_Order_Process:
Digital_Form:
Digital_Transfer_Information:
Format_Name: ASCII
Format_Version_Number: unknown
Format_Information_Content: Data for each collection site are available by data type
Transfer_Size: 3
Digital_Transfer_Option:
Online_Option:
Computer_Contact_Information:
Network_Address:
Network_Resource_Name: <http://sofia.usgs.gov/exchange/hydro_pinkshrimp/index.html>
Access_Instructions: The files may be downloaded from the SOFIA website
Fees: none

Metadata_Reference_Information:
Metadata_Date: 20090511
Metadata_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Heather Henkel
Contact_Organization: U.S. Geological Survey
Contact_Address:
Address_Type: mailing and physical address
Address: 600 Fourth Street South
City: St. Petersburg
State_or_Province: FL
Postal_Code: 33701
Country: USA
Contact_Voice_Telephone: 727 803-8747 ext 3028
Contact_Facsimile_Telephone: 727 803-2030
Contact_Electronic_Mail_Address: sofia-metadata@usgs.gov
Metadata_Standard_Name:
Content Standard for Digital Geospatial Metadata Part 1: Biological Data Profile
Metadata_Standard_Version: FGDC-STD-001.1-1999
Metadata_Access_Constraints: none
Metadata_Use_Constraints:
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