MEGA2
Description
Mega stands for Manipulation Environment for Genetic Analyses. Mega2 is a data-handling program for facilitating genetic linkage and association analyses.
Version
Type mega2 on command line
Sample session
% mega2 ========================================================== MEGA2 4.2 by Daniel E. Weeks, Nandita Mukhopadhyay, Lee W. Almasy, William Mullvihill and Mark Schroeder Copyright (c) 1997-2009 The University of Pittsburgh Last updated: May 14 2009, 07:24:45, valid until June 15, 2009. Mega2 comes with ABSOLUTELY NO WARRANTY. See LICENSE.txt for terms of copying, modifying & redistributing Mega2. ========================================================== Mega2 input menu: ========================================================== 0) Done with this menu - please proceed 1) Input file extension: 01 2) Locus datafile: _ 3) Pedigree datafile: _ 4) Map datafile: _ 5) Omit datafile (optional): _ 6) Frequency datafile (annotated only): _ 7) Penetrance datafile (annotated only): _ 8) Directory for writing output: [ Current directory ] 9) Simulate genotyping errors: [no ] 10) Include all pedigrees whether typed or not (based on fully_typed genotypes) 11) Warn if allele frequency error measure exceeds: No limit 12) Unknown allele & affection value(annotated only): NA Select from options 0-12 (9 to toggle) >Documentation
http://watson.hgen.pitt.edu/docs/mega2_html/mega2.html