Community Sequencing Program
Sequencing Plans for 2006
For status information, see the Genome Projects section.
| Organism | Proposer | Affiliation |
|---|---|---|
| Large Eukaryotes | ||
| Arabidopsis lyrata and Capsella
rubella (pink shepherd's-purse) Why? |
Weigel | Max Planck Inst. for Developmental Biology |
| Mimulus guttatus (monkey flower) Why? |
Willis | Duke Univ. |
| Sorghum bicolor Why? |
Paterson | Univ. of Georgia |
| Small Eukaryotes | ||
| Batrachochytrium dendrobatidis (frog-infecting chytrid fungus ) Why? |
Taylor | UC Berkeley |
| Bicyclus anynana (a butterfly) Why? |
Long | UC Irvine |
| Campanulales (Grammathotheca bergiana, Isotoma petraea, Lobelia anceps, L. angolenis, L. baumannii, L. cardinalis, L. erinus, L. galpinii, L. gregoriana, L. inflata, L. jasionoides, L. malowensis, L. laxa, L. linearis chloroplast, L. patula, L. siphilitica, L. spicata, L. thermalis, L. boninensis, L. morogoroensis chloroplast L. holstii chloroplast, Monopsis alba, M. debilis, M. flava, M. stellaroides, Pratia angulata, P. nummularia, Wimmerella hederacea chloroplast, Carpodetus serratus Chloroplast, Cyphia volubilis chloroplast, Cyphia dentariifolia chloroplast, Cyphia angustiloba, Cyphia crenata Chloroplast, Cyphia digitata chloroplast, Cyphia tortilis chloroplast, Cyphia phyteuma chloroplast, Cyphia belfastica chloroplast, Brighamia insignis chloroplast, Porterella carnosula, Cyanea fissa chloroplast) Why? |
Knox | Indiana Univ. |
| Ciona intestinalis (sea squirt) Why? |
Lemaire | CNRS, France |
| Crassostrea gigas (oyster) | Hedgecock | Univ. of Sourthern California |
| Hydractinia symbiolongicarpus Why? |
Buss | Yale Univ |
| Ictalurus punctatus and I. Furcatus (catfish) Why? |
Liu-J | Auburn Univ. |
| Melampsora larici-populina (poplar rust) Why? |
Martin | Institut National de la Recherche Agronomique |
| Lake Malawi cichlid fish (Metriaclima zebra, Labeotropheus fuelleborni, Melanochromis auratus, Copadichromis conophorus, Rhamphochromis esox) Why? |
Kocher | Univ. of New Hampshire |
| Mycosphaerella fijiensis (cause of black Sigatoka ) Why? |
Goodwin | USDA-ARS, Purdue Univ |
| Mytilus californianus (California mussel) Why? |
Gracey | Stanford Univ. |
| Ostreococcus (green unicellular alga, low-light strain) Why? |
Palenik | UC San Diego |
| Parhyale hawaiensis and Jassa slatteryi (amphipod crustaceans) Why? |
Patel | UC Berkeley |
| Petrolisthes cinctipes (porcelain crab) Why? |
Stillman | San Francisco State Univ. |
| Phycomyces blakesleeanus Why? |
Corrochano | Univ. of Seville |
| Phytophthora capsici (root and crown rot) Why? |
Kingsmore | Natl. Ctr. for Genome Resources |
| Piromyces sp. E2 (a chytrid fungus) Why? |
Baker, S | Pacific Northwest Natl. Lab. |
| Trichoderma virens Why? |
Ebbole | Texas A&M Univ. |
| Triphysaria versicolor (a parasitic wildflower) Why? |
Yoder | UC Davis |
| Xanthoria parietina (a lichen fungus) Why? |
Crittendon | Univ. of Nottingham |
| Bacteria and Archaea | ||
| Acidovorax avenae subsp. Citrulli AAC00-1, Acidovorax JS42, Thermotoga RQ2, and Acidovorax symbiont (Verminephrobacter eiseniae EF01-2) Why? |
Stahl | Univ. of Washington |
| Verrucomicrobia (Akkermansia muciniphila, Chthoniobacter flavus Ellin428, bacterium Ellin 514, Opitutus terrae, and Victivallis vadensis ATCC BAA-548) Why? |
Smidt | Wageningen Univ. |
| Alaskan soil microbial community Why? |
Handelsman | Univ. of Wisconsin- Madison |
| Antarctic marine bacterioplankton Why? |
Murray | Desert Research Inst. |
| Bacillus coagulans 36D1 Why? |
Shanmugam | Univ. of Florida |
| Two caulobacter (Caulobacter sp. K31 and Maricaulis maris MCS10) Why? |
Stephens | Santa Clara Univ. |
| Crenarchaeote community (phylotype C1b.A1) Why? |
Simon | Oregon Health & Science Univ. |
| Euryarchaeota community Why? |
Baker, B | UC Berkeley |
| Six archaea (Halorubrum lacusprofundi ATCC 49239, Methanocorpusculum labreanum Z, Methanoculleus marisnigri JR1, Staphylothermus marinus F1, and Thermofilum pendens Why? |
Woese/ Anderson | Univ. of Illinois at Urbana- Champaign |
| Thermotogales (hyperthermophiles including Fervidobacterium nodosum Rt17-B1, Petrotoga mobilis SJ95, Thermosipho melanesiensis BI429, Thermotoga lettingae TMO, Thermotoga naphthophila, and Thermotoga petrophila RKU-1) Why? |
Noll | Univ. of Connecticut |
| Hypersaline microbial mats Why? |
Pace | Univ. of Colorado |
| Korarchaeota community (Candidatus Korarchaeum cryptofilum OPF8, two others) Why? |
Stetter/ Elkins | Univ. Regensberg, Diversa Corp. |
| Nitrosomonas (isolate IS-79 and oligotropha Nm45) Why? |
Norton | Utah State Univ. |
| Polynucleobacter necessarius STIR1 and Polynucleobacter sp. QWL-P1DMWA-1 pol_q Why? |
Hahn | Instit. for Limnology, Austria |
| Salinispora tropica CNB-440 and S. arenicola CNS205 (marine actinomycetes) Why? |
Jensen | Scripps Inst., UC San Diego |
| Sinorhizobium medicae WSM 419 Why? |
Reeve | Murdoch Univ. |
| Termite gut microbial community Why? |
Leadbetter | Caltech |
| Terephthalate (TA) degrading community Why? |
Liu/ Hugenholtz | Natl. Univ. of Singapore |
| Hyperthermophilic Archaeal Species (Thermoproteus neutrophilus V24Sta , Pyrobaculum aresenaticum DSM 13514, P. calidifontis, P. islandicum, Caldivirga maquilingensis IC-167) Why? |
Lowe | UC Santa Cruz |
| Opitutaceae bacterium TAV2 (ex. Verrucomicrobium sp. TAV2) Why? |
Schmidt/ Rodrigues | Michigan State Univ. |
