Projects

Industrially Robust Enzymes and Microorganisms for Production of Sugars and Ethanol from Agricultural Biomass Appropriated (D)   Accession Number: 408893

Publications

Beta-D-xylosidase from Selenomonas ruminantium: role of glutamate 186 in catalysis revealed by site-directed mutagenesis, alternate substrates, and inhibitors - (Abstract) - (06-May-09)

Hemicellulolytic enzymes from the maize endophyte Acremonium zeae - (Abstract)

Bischoff, K.M., Jordan, D.B., De Rezende, S.T., Rich, J.O. 2009. Hemicellulolytic enzymes from the maize endophyte Acremonium zeae [abstract]. Biotechnology for Fuels and Chemicals.

Extracellular hemicellulolytic enzymes from the maize endophyte Acremonium zeae - (Peer Reviewed Journal) - (25-Dec-08)

Beta-D-xylosidase from Selenomonas ruminantium: thermodynamics of enzyme-catalyzed and noncatalyzed reactions - (Peer Reviewed Journal)

Jordan, D.B., Braker, J.D. 2009. Beta-D-xylosidase from Selenomonas ruminantium: Thermodynamics of Enzyme-catalyzed and Noncatalyzed Reactions. Applied Biochemistry and Biotechnology. 155(1-3):330-346.

Aminoalcohols as probes of the two-subsite active site of Beta-D-xylosidase from Selenomonas ruminantium - (Peer Reviewed Journal)

Jordan, D.B., Mertens, J.A., Braker, J.D. 2009. Aminoalcohols as probes of the two-subsite active site of Beta-D-xylosidase from Selenomonas ruminantium. Biochimica et Biophysica Acta. 1794(1):144-158.

Beta-D-xylosidase from Selenomonas ruminantium: thermodynamics of enzyme-catalyzed and noncatalyzed reactions - (Abstract) - (18-Jul-08)

Enzymes, Industrial - (Book/Chapter)

Saha, B.C., Bothast, R.J., Jordan, D.B. 2009. Enzymes, Industrial (Overview). In: Schaechter, M., editor. Encyclopedia of Microbiology. Oxford: Elsevier. p. 281-294

Beta-D-xylosidase from Selenomonas ruminantium: thermodynamics of enzyme-catalyzed and noncatalyzed reactions - (Abstract) - (07-May-08)

Beta-D-xylosidase from Selenomonas ruminantium: catalyzed reactions with natural substrates - (Abstract) - (07-May-08)

Biofuels group NSF DUSEL project - (Abstract)

Bang, S., Sani, R., Bleakly, B., Bischoff, K.M., Hughes, S.R., Wagschal, K.C., Wong, D., Lee, C.C., Jordan, D.B., Pokkuluri, R., Schiffer, M. 2008. Biofuels group NSF DUSEL project [abstract]. Homestake DUSEL Spring Workshop. Talk 10. p. 2.

Structure of the two-subsite beta-D-xylosidase from Selenomonas ruminantium in complex with 1,3-bis[tris(hydroxymethyl)methylamino]propane - (Peer Reviewed Journal)

Brunzelle, J.S., Jordan, D.B., McCaslin, D.R., Olczak, A., Wawrzak, Z. 2008. Structure of the two-subsite beta-D-xylosidase from Selenomonas ruminantium in complex with 1,3-bis[tris(hydroxymethyl)methylamino] propane. Archives Of Biochemistry and Biophysics. 474(1):157-166.

Beta-D-Xylosidase from Selenomonas Ruminantium: Catalyzed Reactions with Natural and Artificial Substrates - (Peer Reviewed Journal)

Jordan, D.B. 2008. Beta-D-xylosidase from Selenomonas ruminantium: catalyzed reactions with natural and artificial substrates. Applied Biochemistry and Biotechnology. 146:137-149.

Structure-Function Relationships of a Catalytically-Efficient Beta-D-Xylosidase - (Abstract) - (03-Aug-07)

Variation in Relative Substrate Specificty of Bifunctional Beta-D-Xylosidase/alpha-L-Arabinofuranosidase by Single-Site Mutations: Roles of Substrate Distortion and Recognition - (Peer Reviewed Journal)

Jordan, D.B., Li, X. 2007. Variation in relative substrate specificity of bifunctional beta-D-xylosidase/alpha-L-arabinofuranosidase by single-site mutations: roles of substrate distortion and recognition. Biochimica et Biophysica Acta. 1774(9):1192-1198.

Inhibition of the Two-Subsite Beta-D-Xylosidase from Selenomonas Ruminantium by Sugars: Competitive, Noncompetitive, Double Binding, and Slow Binding Modes - (Peer Reviewed Journal)

Jordan, D.B., Braker, J.D. 2007. Inhibition of the two-subsite beta-d-xylosidase from Selenomonas ruminantium by sugars: competitive, noncompetitive, double binding, and slow binding modes. Archives of Biochemistry and Biophysics. 465(1):231-246.

Beta-D-Xylosidase from Selenomonas Ruminantium: Thermodynamics of Enzyme-Catalyzed and Noncatalyzed Reactions - (Abstract)

Jordan, D.B. 2007. Beta-D-xylosidase from Selenomonas ruminantium: thermodynamics of enzyme-catalyzed and noncatalyzed reactions [abstract]. Biotechnology for Fuels and Chemicals. p. 105.

Beta-D-Xylosidase from Selenomonas Ruminantium: Catalyzed Reactions with Natural and Artificial Substrates - (Abstract)

Jordan, D.B. 2007. Beta-D-xylosidase from Selenomonas ruminantium: catalyzed reactions with natural and artificial substrates [abstract]. Biotechnology for Fuels and Chemicals. p. 106.

Structure-Function Relationships of a Catalytically Efficient Beta-D-Xylosidase - (Abstract)

Jordan, D.B. 2007. Structure-function relationships of a catalytically efficient beta-D-xylosidase [abstract]. American Chemical Society. Paper No. 175.

Production of Highly Active Lignocellulose-Degrading Enzymes of Anaerobic Fungi by Industrially Relevant Fungi - (Abstract)

Li, X., Skory, C.D., Ximenes, E.A., Jordan, D.B., Dien, B.S., Hughes, S.R., Cotta, M.A. 2007. Production of highly active lignocellulose-degrading enzymes of anaerobic fungi by industrially relevant fungi [abstract].

Expression of An at-Rich Xylanase Gene from the Anaerobic Fungus Orpinomyces Sp. Strain Pc-2 in and Secretion of the Heterologous Enzyme by Hypocrea Jecorina - (Peer Reviewed Journal)

Li, X., Skory, C.D., Ximenes, E.A., Jordan, D.B., Dien, B.S., Hughes, S.R., Cotta, M.A. 2007. Expression of an AT-rich xylanase gene from the anaerobic fungus Orpinomyces sp. strain PC-2 in and secretion of the heterologous enzyme by Hypocrea jecorina. Applied Microbiology and Biotechnology. 74:1264-1275.

Fungicidal Carboxamides - (Other)

Basarab, G.S., Jordan, D.B., Lessen, T.A., Hansen, S.L. 2006. Fungicidal carboxamides. U.S. Patent 7,135,585.

Beta-D-Xylosidase from Selenomonas Ruminantium of Glycoside Hydrolase Family 43 - (Peer Reviewed Journal)

Jordan, D.B., Li, X., Dunlap, C.A., Whitehead, T.R., Cotta, M.A. 2007. Beta-D-xylosidase from Selenomonas ruminantium of glycoside hydrolase family 43. Applied Biochemistry and Biotechnology. 136-140:93-104.

Hemicellulases for Mediating Biomass Saccharification - (Abstract) - (13-Oct-06)

Hemicellulases for Mediating Biomass Saccharification - (Proceedings/Symposium)

Jordan, D.B., Dien, B.S., Li, X., Cotta, M.A. 2006. Hemicellulases for mediating biomass saccharification. In: Proceedings of Renewable Energy 2006, October 9-13, 2006, Makuhari Messe, Chiba, Japan. p. 1036-1041.

Beta-D-Xylosidase from Selenomonas Ruminantium of Glycoside Hydrolase Family 43 - (Abstract)

Jordan, D.B., Li, X., Dunlap, C.A., Whitehead, T.R., Cotta, M.A. 2006. Beta-D-xylosidase from Selenomonas ruminantium of glycoside hydrolase family 43 [abstract]. Gordon Research Conference. p. 3.

Beta-D-Xylosidase from Selenomonas Ruminantium of Glycoside Hydrolase Family 43 - (Abstract)

Jordan, D.B., Li, X., Dunlap, C.A., Whitehead, T.R., Cotta, M.A. 2006. Beta-D-xylosidase from Selenomonas ruminantium of glycoside hydrolase family 43 [abstract]. Biotechnology for Fuels and Chemicals. p.93

Codon Optimization of An A+t Rich Xylanase Gene from the Anaerobic Fungus Orpinomyces Pc-2 for Expression by Trichoderma Reesei - (Abstract)

Li, X., Jordan, D.B., Ximenes, E.A., Cotta, M.A., Dien, B.S., Hughes, S.R. 2006. Codon optimization of an A+T rich xylanase gene from the anaerobic fungus Orpinomyces PC-2 for expression by Trichoderma reesei [abstract]. In: Proceedings of the 9th International Workshop on Trichoderma and Gliocladium, April 6-8, 2006, Vienna, Austria. Paper No. T3.

Enzymatic Saccharification of Hot-Water Pretreated Corn Fiber for Production of Monosaccharides - (Peer Reviewed Journal)

Dien, B.S., Li, X., Iten, L.B., Jordan, D.B., Nichols, N.N., O Bryan, P.J., Cotta, M.A. 2006. Enzymatic saccharification of hot-water pretreated corn fiber for production of monosaccharides. Enzyme and Microbial Technology. 39:1137-1144.

Heterologous Production by Trichoderma Reesei of a Xylanase of the Anaerobic Fungus Orpinomyces Pc-2 - (Abstract) - (09-Nov-05)

Plasmid-Based Functional Proteomic Robotic Workcell Process for High-Throughput Screening of Multiplexed Libraries of Mutagenized Clones - (Abstract)

Hughes, S.R., Riedmuller, S., Mertens, J.A., Li, X., Qureshi, N., Bischoff, K.M., Jordan, D.B., Cotta, M.A., Farrelly, P. 2005. Plasmid-based functional proteomic robotic workcell process for high-throughput screening of multiplexed libraries of mutagenized clones [abstract]. Optimization high-throughput Cultures for Bioprocessing 2005. p. 3.

Active-Site Models of Riboflavin Synthase - (Proceedings/Symposium)

Jordan, D.B., Calabrese, J.C., Liao, D., Wawrzak, Z., Zheng, Y. 2005. Active-site models of riboflavin synthase. In: Nishino, T., Miura, R., Tanokura, M., Fukui, K., editors. Flavins and Flavoproteins 2005. Tokyo: ARchiTect, Inc. p. 737-742.

Functional Proteomic Workcell for High Volume Plasmid Preparations for Repeated in Vitro Protein Expression and High Throughput Screening to Identify Mutant Enyzmes for Use at Low Ph - (Abstract)

Hughes, S.R., Riedmuller, S.B., Mertens, J.A., Jordan, D.B., Li, X., Qureshi, N., Cotta, M.A., Farrelly, P.J., Bischoff, K.M. 2005. Functional proteomic workcell for high volume plasmid preparations for repeated in vitro protein expression and high throughput screening to identify mutant enyzmes for use at low pH [abstract]. Optimization High-throughput Cultures for Bioprocessing 2005. 13:3.

Enzymatic Saccharification of Pretreated Corn Fiber for Production of Sugars - (Abstract)

Dien, B.S., Li, X., Jordan, D.B., Nichols, N.N., Iten, L.B., Cotta, M.A. 2005. Enzymatic saccharification of pretreated corn fiber for production of sugars [abstract]. International Starch Technology. p. 90.

Active-Site Models of Riboflavin Synthase - (Abstract)

Jordan, D.B., Calabrese, J.C. 2005. Active-site models of riboflavin synthase [abstract]. International Symposium on Flavins and Flavoproteins. p. 104.

Substrate Specificities of Two Glycoside Hydrolase Family 11 Xylanases - (Abstract)

Li, X., Jordan, D.B., Cotta, M.A. 2005. Substrate specificities of two glycoside hydrolase family 11 xylanases [abstract]. American Chemical Society. Paper No. 066.

Advances on Enzymatic Saccharification of Lignocellulosic Biomass - (Abstract)

Li, X., Jordan, D.B., Dien, B.S., Cotta, M.A., Kane, P.M. 2004. Advances on enzymatic saccharification of lignocellulosic biomass [abstract]. Great Lakes Regional American Chemical Society. Paper No. 04-035.

Crystal Structure of Phenylalanine Ammonia Lyase: Multiple Helix Dipoles Implicated in Catalysis - (Peer Reviewed Journal)

Calabrese, J.C., Jordan, D.B., Boodhoo, A., Sariaslani, S., Vannelli, T. 2004. Crystal structure of phenylalanine ammonia lyase: multiple helix dipoles implicated in catalysis. Journal of Biochemistry. 43:11403-11416.