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Volume 147(1);  May 2008
Editor's Choice Series on the Next Generation of Biotech Crops
The Outlook for Protein Engineering in Crop Improvement
A. Gururaj Rao
Plant Physiol. 2008 May; 147(1): 6–12. doi: 10.1104/pp.108.117929.
PMCID: PMC2330291
Targets for Crop Biotechnology in a Future High-CO2 and High-O3 World
Elizabeth A. Ainsworth, Alistair Rogers, and Andrew D.B. Leakey
Plant Physiol. 2008 May; 147(1): 13–19. doi: 10.1104/pp.108.117101.
PMCID: PMC2330306
Regulating the Regulators: The Future Prospects for Transcription-Factor-Based Agricultural Biotechnology Products
Karen Century, T. Lynne Reuber, and Oliver J. Ratcliffe
Plant Physiol. 2008 May; 147(1): 20–29. doi: 10.1104/pp.108.117887.
PMCID: PMC2330319
On the Inside
On the Inside
Peter V. Minorsky
Plant Physiol. 2008 May; 147(1): 1–2. doi: 10.1104/pp.104.900257.
PMCID: PMC2330304
Editorial
Editor's Choice Series: The Next Generation of Biotech Crops
Susan J. Martino-Catt and Eric S. Sachs
Plant Physiol. 2008 May; 147(1): 3–5. doi: 10.1104/pp.104.900256.
PMCID: PMC2330289
Scientific Correspondence
Activity Range of Arabidopsis Small RNAs Derived from Different Biogenesis Pathways
Elsa M. Tretter, John Paul Alvarez, Yuval Eshed, and John L. Bowman
Plant Physiol. 2008 May; 147(1): 58–62. doi: 10.1104/pp.108.117119.
PMCID: PMC2330300
Bioinformatics
Annotating Genes of Known and Unknown Function by Large-Scale Coexpression Analysis
Kevin Horan, Charles Jang, Julia Bailey-Serres, Ron Mittler, Christian Shelton, Jeff F. Harper, Jian-Kang Zhu, John C. Cushman, Martin Gollery, and Thomas Girke
Plant Physiol. 2008 May; 147(1): 41–57. doi: 10.1104/pp.108.117366.
PMCID: PMC2330292
Breakthrough Technologies
Global Characterization of Cell-Specific Gene Expression through Fluorescence-Activated Sorting of Nuclei
Changqing Zhang, Roger A. Barthelson, Georgina M. Lambert, and David W. Galbraith
Plant Physiol. 2008 May; 147(1): 30–40. doi: 10.1104/pp.107.115246.
PMCID: PMC2330299
Research Articles
Biochemical Processes and Macromolecular Structures
Cell Wall Modifications in Arabidopsis Plants with Altered α-l-Arabinofuranosidase Activity
Ricardo A. Chávez Montes, Philippe Ranocha, Yves Martinez, Zoran Minic, Lise Jouanin, Mélanie Marquis, Luc Saulnier, Lynette M. Fulton, Christopher S. Cobbett, Frédérique Bitton, Jean-Pierre Renou, Alain Jauneau, and Deborah Goffner
Plant Physiol. 2008 May; 147(1): 63–77. doi: 10.1104/pp.107.110023.
PMCID: PMC2330305
UDP-Xylose-Stimulated Glucuronyltransferase Activity in Wheat Microsomal Membranes: Characterization and Role in Glucurono(arabino)xylan Biosynthesis
Wei Zeng, Mohor Chatterjee, and Ahmed Faik
Plant Physiol. 2008 May; 147(1): 78–91. doi: 10.1104/pp.107.115576.
PMCID: PMC2330321
Arabidopsis Sucrose Transporter AtSUC1 Is Important for Pollen Germination and Sucrose-Induced Anthocyanin Accumulation
Alicia B. Sivitz, Anke Reinders, and John M. Ward
Plant Physiol. 2008 May; 147(1): 92–100. doi: 10.1104/pp.108.118992.
PMCID: PMC2330317
Construction of a Functional CMP-Sialic Acid Biosynthesis Pathway in Arabidopsis
Alexandra Castilho, Martin Pabst, Renaud Leonard, Christiane Veit, Friedrich Altmann, Lukas Mach, Josef Glössl, Richard Strasser, and Herta Steinkellner
Plant Physiol. 2008 May; 147(1): 331–339. doi: 10.1104/pp.108.117572.
PMCID: PMC2330290
Bioenergetics and Photosynthesis
Decrease in Manganese Superoxide Dismutase Leads to Reduced Root Growth and Affects Tricarboxylic Acid Cycle Flux and Mitochondrial Redox Homeostasis
Megan J. Morgan, Martin Lehmann, Markus Schwarzländer, Charles J. Baxter, Agata Sienkiewicz-Porzucek, Thomas C.R. Williams, Nicolas Schauer, Alisdair R. Fernie, Mark D. Fricker, R. George Ratcliffe, Lee J. Sweetlove, and Iris Finkemeier
Plant Physiol. 2008 May; 147(1): 101–114. doi: 10.1104/pp.107.113613.
PMCID: PMC2330298
Mild Reductions in Mitochondrial Citrate Synthase Activity Result in a Compromised Nitrate Assimilation and Reduced Leaf Pigmentation But Have No Effect on Photosynthetic Performance or Growth
Agata Sienkiewicz-Porzucek, Adriano Nunes-Nesi, Ronan Sulpice, Jan Lisec, Danilo C. Centeno, Petronia Carillo, Andrea Leisse, Ewa Urbanczyk-Wochniak, and Alisdair R. Fernie
Plant Physiol. 2008 May; 147(1): 115–127. doi: 10.1104/pp.108.117978.
PMCID: PMC2330314
Expression Analysis of Genes Associated with the Induction of the Carbon-Concentrating Mechanism in Chlamydomonas reinhardtii
Takashi Yamano, Kenji Miura, and Hideya Fukuzawa
Plant Physiol. 2008 May; 147(1): 340–354. doi: 10.1104/pp.107.114652.
PMCID: PMC2330288
Cell Biology and Signal Transduction
Arabidopsis Ribosomal Proteins RPL23aA and RPL23aB Are Differentially Targeted to the Nucleolus and Are Disparately Required for Normal Development
Rory F. Degenhardt and Peta C. Bonham-Smith
Plant Physiol. 2008 May; 147(1): 128–142. doi: 10.1104/pp.107.111799.
PMCID: PMC2330296
Development and Hormone Action
Elucidating the Germination Transcriptional Program Using Small Molecules
George W. Bassel, Pauline Fung, Tsz-fung Freeman Chow, Justin A. Foong, Nicholas J. Provart, and Sean R. Cutler
Plant Physiol. 2008 May; 147(1): 143–155. doi: 10.1104/pp.107.110841.
PMCID: PMC2330302
Further Characterization of a Rice AGL12 Group MADS-Box Gene, OsMADS26
Shinyoung Lee, Young-Min Woo, Sung-Il Ryu, Young-Duck Shin, Woo Taek Kim, Ky Young Park, In-Jung Lee, and Gynheung An
Plant Physiol. 2008 May; 147(1): 156–168. doi: 10.1104/pp.107.114256.
PMCID: PMC2330315
SHORT HYPOCOTYL IN WHITE LIGHT1, a Serine-Arginine-Aspartate-Rich Protein in Arabidopsis, Acts as a Negative Regulator of Photomorphogenic Growth
Shikha Bhatia, Sreeramaiah N. Gangappa, Ritu Kuswaha, Snehangshu Kundu, and Sudip Chattopadhyay
Plant Physiol. 2008 May; 147(1): 169–178. doi: 10.1104/pp.108.118174.
PMCID: PMC2330309
Amino Acid Substitutions in Homologs of the STAY-GREEN Protein Are Responsible for the green-flesh and chlorophyll retainer Mutations of Tomato and Pepper
Cornelius S. Barry, Ryan P. McQuinn, Mi-Young Chung, Anna Besuden, and James J. Giovannoni
Plant Physiol. 2008 May; 147(1): 179–187. doi: 10.1104/pp.108.118430.
PMCID: PMC2330295
Nitric Oxide Triggers Phosphatidic Acid Accumulation via Phospholipase D during Auxin-Induced Adventitious Root Formation in Cucumber
María Luciana Lanteri, Ana María Laxalt, and Lorenzo Lamattina
Plant Physiol. 2008 May; 147(1): 188–198. doi: 10.1104/pp.107.111815.
PMCID: PMC2330318
The Pea DELLA Proteins LA and CRY Are Important Regulators of Gibberellin Synthesis and Root Growth
Diana E. Weston, Robert C. Elliott, Diane R. Lester, Catherine Rameau, James B. Reid, Ian C. Murfet, and John J. Ross
Plant Physiol. 2008 May; 147(1): 199–205. doi: 10.1104/pp.108.115808.
PMCID: PMC2330316
Low-Temperature and Daylength Cues Are Integrated to Regulate FLOWERING LOCUS T in Barley
Megan N. Hemming, W. James Peacock, Elizabeth S. Dennis, and Ben Trevaskis
Plant Physiol. 2008 May; 147(1): 355–366. doi: 10.1104/pp.108.116418.
PMCID: PMC2330320
Environmental Stress and Adaptation to Stress
Ammonia Triggers Photodamage of Photosystem II in the Cyanobacterium Synechocystis sp. Strain PCC 6803
Miriam Drath, Nicole Kloft, Alfred Batschauer, Kay Marin, Jens Novak, and Karl Forchhammer
Plant Physiol. 2008 May; 147(1): 206–215. doi: 10.1104/pp.108.117218.
PMCID: PMC2330311
The Central Role of a SNRK2 Kinase in Sulfur Deprivation Responses
David Gonzalez-Ballester, Steve V. Pollock, Wirulda Pootakham, and Arthur R. Grossman
Plant Physiol. 2008 May; 147(1): 216–227. doi: 10.1104/pp.108.116137.
PMCID: PMC2330293
Isolation and Characterization of Mutants of Common Ice Plant Deficient in Crassulacean Acid Metabolism
John C. Cushman, Sakae Agarie, Rebecca L. Albion, Stewart M. Elliot, Tahar Taybi, and Anne M. Borland
Plant Physiol. 2008 May; 147(1): 228–238. doi: 10.1104/pp.108.116889.
PMCID: PMC2330286
The Arabidopsis Putative Selenium-Binding Protein Family: Expression Study and Characterization of SBP1 as a Potential New Player in Cadmium Detoxification Processes
Christelle Dutilleul, Agnès Jourdain, Jacques Bourguignon, and Véronique Hugouvieux
Plant Physiol. 2008 May; 147(1): 239–251. doi: 10.1104/pp.107.114033.
PMCID: PMC2330310
The Ionic Environment Controls the Contribution of the Barley HvHAK1 Transporter to Potassium Acquisition
Fabiana R. Fulgenzi, María Luisa Peralta, Silvina Mangano, Cristian H. Danna, Augusto J. Vallejo, Pere Puigdomenech, and Guillermo E. Santa-María
Plant Physiol. 2008 May; 147(1): 252–262. doi: 10.1104/pp.107.114546.
PMCID: PMC2330294
Disruption of the Arabidopsis Circadian Clock Is Responsible for Extensive Variation in the Cold-Responsive Transcriptome
Zuzanna Bieniawska, Carmen Espinoza, Armin Schlereth, Ronan Sulpice, Dirk K. Hincha, and Matthew A. Hannah
Plant Physiol. 2008 May; 147(1): 263–279. doi: 10.1104/pp.108.118059.
PMCID: PMC2330297
A Third Phytoene Synthase Is Devoted to Abiotic Stress-Induced Abscisic Acid Formation in Rice and Defines Functional Diversification of Phytoene Synthase Genes
Ralf Welsch, Florian Wüst, Cornelia Bär, Salim Al-Babili, and Peter Beyer
Plant Physiol. 2008 May; 147(1): 367–380. doi: 10.1104/pp.108.117028.
PMCID: PMC2330301
Chaperone Activity of ERD10 and ERD14, Two Disordered Stress-Related Plant Proteins
Denes Kovacs, Eva Kalmar, Zsolt Torok, and Peter Tompa
Plant Physiol. 2008 May; 147(1): 381–390. doi: 10.1104/pp.108.118208.
PMCID: PMC2330285
Characterization of Cold-Responsive Extracellular Chitinase in Bromegrass Cell Cultures and Its Relationship to Antifreeze Activity
Toshihide Nakamura, Masaya Ishikawa, Hiroko Nakatani, and Aska Oda
Plant Physiol. 2008 May; 147(1): 391–401. doi: 10.1104/pp.106.081497.
PMCID: PMC2330313
Increased Air Temperature during Simulated Autumn Conditions Impairs Photosynthetic Electron Transport between Photosystem II and Photosystem I
Florian Busch, Norman P.A. Hüner, and Ingo Ensminger
Plant Physiol. 2008 May; 147(1): 402–414. doi: 10.1104/pp.108.117598.
PMCID: PMC2330303
Genetics, Genomics, and Molecular Evolution
Tobacco Transcription Factors: Novel Insights into Transcriptional Regulation in the Solanaceae
Paul J. Rushton, Marta T. Bokowiec, Shengcheng Han, Hongbo Zhang, Jennifer F. Brannock, Xianfeng Chen, Thomas W. Laudeman, and Michael P. Timko
Plant Physiol. 2008 May; 147(1): 280–295. doi: 10.1104/pp.107.114041.
PMCID: PMC2330323
Genotype, Age, Tissue, and Environment Regulate the Structural Outcome of Glucosinolate Activation
Adam M. Wentzell and Daniel J. Kliebenstein
Plant Physiol. 2008 May; 147(1): 415–428. doi: 10.1104/pp.107.115279.
PMCID: PMC2330308
Plants Interacting with Other Organisms
Biosynthesis and Accumulation of Ergoline Alkaloids in a Mutualistic Association between Ipomoea asarifolia (Convolvulaceae) and a Clavicipitalean Fungus
Anne Markert, Nicola Steffan, Kerstin Ploss, Sabine Hellwig, Ulrike Steiner, Christel Drewke, Shu-Ming Li, Wilhelm Boland, and Eckhard Leistner
Plant Physiol. 2008 May; 147(1): 296–305. doi: 10.1104/pp.108.116699.
PMCID: PMC2330284
Characterization of an Amino Acid Permease from the Endomycorrhizal Fungus Glomus mosseae
Gilda Cappellazzo, Luisa Lanfranco, Michael Fitz, Daniel Wipf, and Paola Bonfante
Plant Physiol. 2008 May; 147(1): 429–437. doi: 10.1104/pp.108.117820.
PMCID: PMC2330287
Systems Biology, Molecular Biology, and Gene Regulation
Independence and Interaction of Regions of the INNER NO OUTER Protein in Growth Control during Ovule Development
Thomas L. Gallagher and Charles S. Gasser
Plant Physiol. 2008 May; 147(1): 306–315. doi: 10.1104/pp.107.114603.
PMCID: PMC2330322
Principal Transcriptional Programs Regulating Plant Amino Acid Metabolism in Response to Abiotic Stresses
Hadar Less and Gad Galili
Plant Physiol. 2008 May; 147(1): 316–330. doi: 10.1104/pp.108.115733.
PMCID: PMC2330312
Correction
CORRECTIONS
Plant Physiol. 2008 May; 147(1): 438. doi: 10.1104/pp.104.900258.
PMCID: PMC2330307
Corrects: Song Lim Kim, et al. OsMADS51 Is a Short-Day Flowering Promoter That Functions Upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol. 2007 December; 145(4): 1484–1494.
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