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Volume 142(3);  November 2006
High Impact
Plant Response to Bacterial Pathogens. Overlap between Innate and Gene-for-Gene Defense Response
Aleel K. Grennan
Plant Physiol. 2006 November; 142(3): 809–811. doi: 10.1104/pp.106.900207.
PMCID: PMC1630729
Update
Apical Dominance and Shoot Branching. Divergent Opinions or Divergent Mechanisms?
Elizabeth Ann Dun, Brett James Ferguson, and Christine Anne Beveridge
Plant Physiol. 2006 November; 142(3): 812–819. doi: 10.1104/pp.106.086868.
PMCID: PMC1630731
On the Inside
On the Inside
Peter V. Minorsky
Plant Physiol. 2006 November; 142(3): 807–808. doi: 10.1104/pp.104.900208.
PMCID: PMC1630720
Genome Analysis
Divergence of the Dof Gene Families in Poplar, Arabidopsis, and Rice Suggests Multiple Modes of Gene Evolution after Duplication
Xiaohan Yang, Gerald A. Tuskan, and (Max) Zong-Ming Cheng
Plant Physiol. 2006 November; 142(3): 820–830. doi: 10.1104/pp.106.083642.
PMCID: PMC1630746
The Arabidopsis Unannotated Secreted Peptide Database, a Resource for Plant Peptidomics
Kevin A. Lease and John C. Walker
Plant Physiol. 2006 November; 142(3): 831–838. doi: 10.1104/pp.106.086041.
PMCID: PMC1630735
Research Articles
Biochemical Processes and Macromolecular Structures
Arabidopsis Seed Development and Germination Is Associated with Temporally Distinct Metabolic Switches
Aaron Fait, Ruthie Angelovici, Hadar Less, Itzhak Ohad, Ewa Urbanczyk-Wochniak, Alisdair R. Fernie, and Gad Galili
Plant Physiol. 2006 November; 142(3): 839–854. doi: 10.1104/pp.106.086694.
PMCID: PMC1630763
Molecular Identification of an Arabidopsis S-Adenosylmethionine Transporter. Analysis of Organ Distribution, Bacterial Expression, Reconstitution into Liposomes, and Functional Characterization
Luigi Palmieri, Roberto Arrigoni, Emanuela Blanco, Fernando Carrari, Maria Ines Zanor, Claudia Studart-Guimaraes, Alisdair R. Fernie, and Ferdinando Palmieri
Plant Physiol. 2006 November; 142(3): 855–865. doi: 10.1104/pp.106.086975.
PMCID: PMC1630753
CER4 Encodes an Alcohol-Forming Fatty Acyl-Coenzyme A Reductase Involved in Cuticular Wax Production in Arabidopsis
Owen Rowland, Huanquan Zheng, Shelley R. Hepworth, Patricia Lam, Reinhard Jetter, and Ljerka Kunst
Plant Physiol. 2006 November; 142(3): 866–877. doi: 10.1104/pp.106.086785.
PMCID: PMC1630741
The Role of Cytosolic α-Glucan Phosphorylase in Maltose Metabolism and the Comparison of Amylomaltase in Arabidopsis and Escherichia coli
Yan Lu, Jon M. Steichen, Jian Yao, and Thomas D. Sharkey
Plant Physiol. 2006 November; 142(3): 878–889. doi: 10.1104/pp.106.086850.
PMCID: PMC1630732
Up-Regulation of 1-Deoxy-d-Xylulose-5-Phosphate Synthase Enhances Production of Essential Oils in Transgenic Spike Lavender
Jesús Muñoz-Bertomeu, Isabel Arrillaga, Roc Ros, and Juan Segura
Plant Physiol. 2006 November; 142(3): 890–900. doi: 10.1104/pp.106.086355.
PMCID: PMC1630752
The Cellulose Synthase Gene Superfamily and Biochemical Functions of Xylem-Specific Cellulose Synthase-Like Genes in Populus trichocarpa
Shiro Suzuki, Laigeng Li, Ying-Hsuan Sun, and Vincent L. Chiang
Plant Physiol. 2006 November; 142(3): 1233–1245. doi: 10.1104/pp.106.086678.
PMCID: PMC1630762
Chloroplasts as a Nitric Oxide Cellular Source. Effect of Reactive Nitrogen Species on Chloroplastic Lipids and Proteins
Sebastián Jasid, Marcela Simontacchi, Carlos G. Bartoli, and Susana Puntarulo
Plant Physiol. 2006 November; 142(3): 1246–1255. doi: 10.1104/pp.106.086918.
PMCID: PMC1630751
Bioenergetics and Photosynthesis
Glutamate:Glyoxylate Aminotransferase Modulates Amino Acid Content during Photorespiration
Daisuke Igarashi, Hiroko Tsuchida, Mitsue Miyao, and Chieko Ohsumi
Plant Physiol. 2006 November; 142(3): 901–910. doi: 10.1104/pp.106.085514.
PMCID: PMC1630728
Differential Operation of Dual Protochlorophyllide Reductases for Chlorophyll Biosynthesis in Response to Environmental Oxygen Levels in the Cyanobacterium Leptolyngbya boryana
Shoji Yamazaki, Jiro Nomata, and Yuichi Fujita
Plant Physiol. 2006 November; 142(3): 911–922. doi: 10.1104/pp.106.086090.
PMCID: PMC1630749
Cell Biology and Signal Transduction
Diacidic Motif Is Required for Efficient Transport of the K+ Channel KAT1 to the Plasma Membrane
Melanie Mikosch, Annette C. Hurst, Brigitte Hertel, and Ulrike Homann
Plant Physiol. 2006 November; 142(3): 923–930. doi: 10.1104/pp.106.087064.
PMCID: PMC1630742
AKINβγ Contributes to SnRK1 Heterotrimeric Complexes and Interacts with Two Proteins Implicated in Plant Pathogen Resistance through Its KIS/GBD Sequence
Lionel Gissot, Cécile Polge, Mathieu Jossier, Thomas Girin, Jean-Pierre Bouly, Martin Kreis, and Martine Thomas
Plant Physiol. 2006 November; 142(3): 931–944. doi: 10.1104/pp.106.087718.
PMCID: PMC1630761
Localization of Green Fluorescent Protein Fusions with the Seven Arabidopsis Vacuolar Sorting Receptors to Prevacuolar Compartments in Tobacco BY-2 Cells
Yansong Miao, Pak Kan Yan, Hyeran Kim, Inhwan Hwang, and Liwen Jiang
Plant Physiol. 2006 November; 142(3): 945–962. doi: 10.1104/pp.106.083618.
PMCID: PMC1630755
Calcium Entry Mediated by GLR3.3, an Arabidopsis Glutamate Receptor with a Broad Agonist Profile
Zhi Qi, Nicholas R. Stephens, and Edgar P. Spalding
Plant Physiol. 2006 November; 142(3): 963–971. doi: 10.1104/pp.106.088989.
PMCID: PMC1630757
Green Light Adjusts the Plastid Transcriptome during Early Photomorphogenic Development
Amit Dhingra, Dawn H. Bies, Kevin R. Lehner, and Kevin M. Folta
Plant Physiol. 2006 November; 142(3): 1256–1266. doi: 10.1104/pp.106.088351.
PMCID: PMC1630736
Development and Hormone Action
Isolation of mtpim Proves Tnt1 a Useful Reverse Genetics Tool in Medicago truncatula and Uncovers New Aspects of AP1-Like Functions in Legumes
Reyes Benlloch, Isabelle d'Erfurth, Cristina Ferrandiz, Viviane Cosson, José Pío Beltrán, Luis Antonio Cañas, Adam Kondorosi, Francisco Madueño, and Pascal Ratet
Plant Physiol. 2006 November; 142(3): 972–983. doi: 10.1104/pp.106.083543.
PMCID: PMC1630737
Extracellular ATP in Plants. Visualization, Localization, and Analysis of Physiological Significance in Growth and Signaling
Sung-Yong Kim, Mayandi Sivaguru, and Gary Stacey
Plant Physiol. 2006 November; 142(3): 984–992. doi: 10.1104/pp.106.085670.
PMCID: PMC1630726
Building Up of the Plastid Transcriptional Machinery during Germination and Early Plant Development
Emilie Demarsy, Florence Courtois, Jacinthe Azevedo, Laurence Buhot, and Silva Lerbs-Mache
Plant Physiol. 2006 November; 142(3): 993–1003. doi: 10.1104/pp.106.085043.
PMCID: PMC1630747
Separation of Arabidopsis Pollen Tetrads Is Regulated by QUARTET1, a Pectin Methylesterase Gene
Kirk E. Francis, Sandy Y. Lam, and Gregory P. Copenhaver
Plant Physiol. 2006 November; 142(3): 1004–1013. doi: 10.1104/pp.106.085274.
PMCID: PMC1630721
Branching Genes Are Conserved across Species. Genes Controlling a Novel Signal in Pea Are Coregulated by Other Long-Distance Signals
Xenie Johnson, Tanya Brcich, Elizabeth A. Dun, Magali Goussot, Karine Haurogné, Christine A. Beveridge, and Catherine Rameau
Plant Physiol. 2006 November; 142(3): 1014–1026. doi: 10.1104/pp.106.087676.
PMCID: PMC1630745
Consistency of Polyamine Profiles and Expression of Arginine Decarboxylase in Mitosis during Zygotic Embryogenesis of Scots Pine
Jaana Vuosku, Anne Jokela, Esa Läärä, Mira Sääskilahti, Riina Muilu, Suvi Sutela, Teresa Altabella, Tytti Sarjala, and Hely Häggman
Plant Physiol. 2006 November; 142(3): 1027–1038. doi: 10.1104/pp.106.083030.
PMCID: PMC1630739
The FLORAL ORGAN NUMBER4 Gene Encoding a Putative Ortholog of Arabidopsis CLAVATA3 Regulates Apical Meristem Size in Rice
Huangwei Chu, Qian Qian, Wanqi Liang, Changsong Yin, Hexin Tan, Xuan Yao, Zheng Yuan, Jun Yang, Hai Huang, Da Luo, Hong Ma, and Dabing Zhang
Plant Physiol. 2006 November; 142(3): 1039–1052. doi: 10.1104/pp.106.086736.
PMCID: PMC1630730
The Cyclin-Dependent Kinase Inhibitor Orysa;KRP1 Plays an Important Role in Seed Development of Rice
Rosa Maria Barrôco, Adrian Peres, Anne-Marie Droual, Lieven De Veylder, Le Son Long Nguyen, Joris De Wolf, Vladimir Mironov, Rindert Peerbolte, Gerrit T.S. Beemster, Dirk Inzé, Willem F. Broekaert, and Valerie Frankard
Plant Physiol. 2006 November; 142(3): 1053–1064. doi: 10.1104/pp.106.087056.
PMCID: PMC1630760
Developmental and Embryo Axis Regulation of Gibberellin Biosynthesis during Germination and Young Seedling Growth of Pea
Belay T. Ayele, Jocelyn A. Ozga, Leonid V. Kurepin, and Dennis M. Reinecke
Plant Physiol. 2006 November; 142(3): 1267–1281. doi: 10.1104/pp.106.086199.
PMCID: PMC1630722
Environmental Stress and Adaptation to Stress
Identification of Drought Tolerance Determinants by Genetic Analysis of Root Response to Drought Stress and Abscisic Acid
Liming Xiong, Rui-Gang Wang, Guohong Mao, and Jessica M. Koczan
Plant Physiol. 2006 November; 142(3): 1065–1074. doi: 10.1104/pp.106.084632.
PMCID: PMC1630748
Regulation of the High-Affinity NO3 Uptake System by NRT1.1-Mediated NO3 Demand Signaling in Arabidopsis
Gabriel Krouk, Pascal Tillard, and Alain Gojon
Plant Physiol. 2006 November; 142(3): 1075–1086. doi: 10.1104/pp.106.087510.
PMCID: PMC1630733
An Investigation of Boron Toxicity in Barley Using Metabolomics
Ute Roessner, John H. Patterson, Megan G. Forbes, Geoffrey B. Fincher, Peter Langridge, and Anthony Bacic
Plant Physiol. 2006 November; 142(3): 1087–1101. doi: 10.1104/pp.106.084053.
PMCID: PMC1630719
Improved Resistance to Controlled Deterioration in Transgenic Seeds
Pilar Prieto-Dapena, Raúl Castaño, Concepción Almoguera, and Juan Jordano
Plant Physiol. 2006 November; 142(3): 1102–1112. doi: 10.1104/pp.106.087817.
PMCID: PMC1630740
The Arabidopsis Tetratricopeptide Repeat-Containing Protein TTL1 Is Required for Osmotic Stress Responses and Abscisic Acid Sensitivity
Abel Rosado, Arnaldo L. Schapire, Ray A. Bressan, Antoine L. Harfouche, Paul M. Hasegawa, Victoriano Valpuesta, and Miguel A. Botella
Plant Physiol. 2006 November; 142(3): 1113–1126. doi: 10.1104/pp.106.085191.
PMCID: PMC1630727
Biochemical and Molecular Characterization of AtPAP26, a Vacuolar Purple Acid Phosphatase Up-Regulated in Phosphate-Deprived Arabidopsis Suspension Cells and Seedlings
Vasko Veljanovski, Barbara Vanderbeld, Vicki L. Knowles, Wayne A. Snedden, and William C. Plaxton
Plant Physiol. 2006 November; 142(3): 1282–1293. doi: 10.1104/pp.106.087171.
PMCID: PMC1630754
The BnALMT1 and BnALMT2 Genes from Rape Encode Aluminum-Activated Malate Transporters That Enhance the Aluminum Resistance of Plant Cells
Ayalew Ligaba, Maki Katsuhara, Peter R. Ryan, Mineo Shibasaka, and Hideaki Matsumoto
Plant Physiol. 2006 November; 142(3): 1294–1303. doi: 10.1104/pp.106.085233.
PMCID: PMC1630743
Characterization of a Two-Component High-Affinity Nitrate Uptake System in Arabidopsis. Physiology and Protein-Protein Interaction
Mathilde Orsel, Franck Chopin, Olivier Leleu, Susan J. Smith, Anne Krapp, Françoise Daniel-Vedele, and Anthony J. Miller
Plant Physiol. 2006 November; 142(3): 1304–1317. doi: 10.1104/pp.106.085209.
PMCID: PMC1630756
CO2 Sensing at Ocean Surface Mediated by cAMP in a Marine Diatom
Hisashi Harada, Kensuke Nakajima, Kunihiro Sakaue, and Yusuke Matsuda
Plant Physiol. 2006 November; 142(3): 1318–1328. doi: 10.1104/pp.106.086561.
PMCID: PMC1630750
Genetics, Genomics, and Molecular Evolution
Large Expression Differences in Genes for Iron and Zinc Homeostasis, Stress Response, and Lignin Biosynthesis Distinguish Roots of Arabidopsis thaliana and the Related Metal Hyperaccumulator Thlaspi caerulescens
Judith E. van de Mortel, Laia Almar Villanueva, Henk Schat, Jeroen Kwekkeboom, Sean Coughlan, Perry D. Moerland, Emiel Ver Loren van Themaat, Maarten Koornneef, and Mark G.M. Aarts
Plant Physiol. 2006 November; 142(3): 1127–1147. doi: 10.1104/pp.106.082073.
PMCID: PMC1630723
Functional Classification, Genomic Organization, Putatively cis-Acting Regulatory Elements, and Relationship to Quantitative Trait Loci, of Sorghum Genes with Rhizome-Enriched Expression
Cheol Seong Jang, Terry L. Kamps, D. Neil Skinner, Stefan R. Schulze, William K. Vencill, and Andrew H. Paterson
Plant Physiol. 2006 November; 142(3): 1148–1159. doi: 10.1104/pp.106.082891.
PMCID: PMC1630734
Regulation of Seed Size by Hypomethylation of Maternal and Paternal Genomes
Wenyan Xiao, Roy C. Brown, Betty E. Lemmon, John J. Harada, Robert B. Goldberg, and Robert L. Fischer
Plant Physiol. 2006 November; 142(3): 1160–1168. doi: 10.1104/pp.106.088849.
PMCID: PMC1630758
Plants Interacting with Other Organisms
Characterization of a Mitogen-Activated Protein Kinase Gene from Cucumber Required for Trichoderma-Conferred Plant Resistance
Michal Shoresh, Amit Gal-On, Diana Leibman, and Ilan Chet
Plant Physiol. 2006 November; 142(3): 1169–1179. doi: 10.1104/pp.106.082107.
PMCID: PMC1630744
Pathogen-Induced Arabidopsis WRKY7 Is a Transcriptional Repressor and Enhances Plant Susceptibility to Pseudomonas syringae
Kang-Chang Kim, Baofang Fan, and Zhixiang Chen
Plant Physiol. 2006 November; 142(3): 1180–1192. doi: 10.1104/pp.106.082487.
PMCID: PMC1630724
A Novel Function for the Cathepsin D Inhibitor in Tomato
Purificación Lisón, Ismael Rodrigo, and Vicente Conejero
Plant Physiol. 2006 November; 142(3): 1329–1339. doi: 10.1104/pp.106.086587.
PMCID: PMC1630738
Systems Biology, Molecular Biology, and Gene Regulation
Carotenoid Cleavage Dioxygenase (CmCCD4a) Contributes to White Color Formation in Chrysanthemum Petals
Akemi Ohmiya, Sanae Kishimoto, Ryutaro Aida, Satoshi Yoshioka, and Katsuhiko Sumitomo
Plant Physiol. 2006 November; 142(3): 1193–1201. doi: 10.1104/pp.106.087130.
PMCID: PMC1630759
Contribution of Ethylene Biosynthesis for Resistance to Blast Fungus Infection in Young Rice Plants
Takayoshi Iwai, Atsushi Miyasaka, Shigemi Seo, and Yuko Ohashi
Plant Physiol. 2006 November; 142(3): 1202–1215. doi: 10.1104/pp.106.085258.
PMCID: PMC1630725
Light-Induced Expression of a MYB Gene Regulates Anthocyanin Biosynthesis in Red Apples
Adam M. Takos, Felix W. Jaffé, Steele R. Jacob, Jochen Bogs, Simon P. Robinson, and Amanda R. Walker
Plant Physiol. 2006 November; 142(3): 1216–1232. doi: 10.1104/pp.106.088104.
PMCID: PMC1630764
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