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BMC Genomics

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Editor-in-Chief
Melissa Norton, MD

Biology Editor
Penelope Webb, PhD

In-house Editor
Matthew Kaiser



BMC  BMC Genomics, Volume 10


Research article
Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays
Joshua S Bloom, Zia Khan, Leonid Kruglyak, Mona Singh, Amy A Caudy
BMC Genomics 2009, 10:221 (12May2009)
[Abstract] [Provisional PDF]

Research article
A network-based integrative approach to prioritize reliable hits from multiple genome-wide RNAi screens in Drosophila
Li Wang, Zhidong Tu, Fengzhu Sun
BMC Genomics 2009, 10:220 (12May2009)
[Abstract] [Provisional PDF]

Research article
Sequencing and de novo analysis of a coral larval transcriptome using 454 GS-Flx
Eli Meyer, Galina V Aglyamova, Shi Wang, Jade Buchanan-Carter, David Abrego, John K Colbourne, Bette L Willis, Mikhail V Matz
BMC Genomics 2009, 10:219 (12May2009)
[Abstract] [Provisional PDF]

Research article
Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data
Yu-Ping Wang, Kuo-Bin Li
BMC Genomics 2009, 10:218 (12May2009)
[Abstract] [Provisional PDF]

Research article
Ixodes scapularis tick serine proteinase inhibitor (serpin) gene family; annotation and transcriptional analyses
Albert Mulenga, Rabuesak Khumthong, Katelyn C. Chalaire
BMC Genomics 2009, 10:217 (12May2009)
[Abstract] [Provisional PDF]

Research article
Comparative genomics of Toll-like receptor signalling in five species
Oliver C Jann, Annemarie King, Nestor Lopez Corrales, Susan I Anderson, Kirsty Jensen, Tahar Ait-ali, Haizhou Tang, Chunhua Wu, Noelle E Cockett, Alan L Archibald, Elizabeth J Glass
BMC Genomics 2009, 10:216 (11May2009)
[Abstract] [Provisional PDF]

Research article
Dynamic changes in transcripts during regeneration of the secondary vascular system in Populus tomentosa Carr. revealed by cDNA microarrays
Minjie Wang, Xiaoli Qi, Shutang Zhao, Shougong Zhang, Meng-Zhu Lu
BMC Genomics 2009, 10:215 (11May2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Identification and target prediction of miRNAs specifically expressed in rat neural tissue
You-Jia Hua, Zhong-Yi Tang, Kang Tu, Li Zhu, Yi-Xue Li, Lu Xie, Hua-Sheng Xiao
BMC Genomics 2009, 10:214 (9May2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Identification of genes expressed in the hermaphrodite germ line of C. elegans using SAGE
Xin Wang, Yongjun Zhao, Kim Wong, Peter Ehlers, Yuji Kohara, Steven J Jones, Marco A Mara, Robert A Holt, Donald G Moerman, Dave Hansen
BMC Genomics 2009, 10:213 (9May2009)
[Abstract] [Provisional PDF]

Research article
Water deficit alters differentially metabolic pathways affecting important flavor and quality traits in grape berries of Cabernet Sauvignon and Chardonnay
Laurent G Deluc, David R Quilici, Alain Decendit, Jerome Grimplet, Matthew D Wheatley, Karen A Schlauch, Jean-Michel Merillon, John C Cushman, Grant R Cramer
BMC Genomics 2009, 10:212 (8May2009)
[Abstract] [Provisional PDF]

Research article
An integrated RH map of porcine chromosome 10
Jian-Gang Ma, Hiroshi Yasue, Katie E Eyer, Hideki Hiraiwa, Takeshi Shimogiri, Stacey N Meyers, Jonathan E Beever, Lawrence B Schook, Craig W Beattie, Wan-Sheng Liu
BMC Genomics 2009, 10:211 (8May2009)
[Abstract] [Provisional PDF]

Research article
Improving Gene-finding in Chlamydomonas reinhardtii: GreenGenie2
Alan L Kwan, Linya Li, David C Kulp, Susan K Dutcher, Gary D Stormo
BMC Genomics 2009, 10:210 (7May2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Software
ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii
Patrick May, Jan O Christian, Stefan Kempa, Dirk Walther
BMC Genomics 2009, 10:209 (4May2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Genome-wide identification and characterization of cytochrome P450 monooxygenase genes in the ciliate Tetrahymena thermophila
Chengjie Fu, Jie Xiong, Wei Miao
BMC Genomics 2009, 10:208 (1May2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Transcriptional profiling of cattle infected with Trypanosoma congolense highlights gene expression signatures underlying trypanotolerance and trypanosusceptibility.
Grace M O' Gorman, Stephen DE Park, Emmeline W Hill, Kieran G Meade, Paul M Coussens, Morris Agaba, Jan Naessens, Stephen J Kemp, David E MacHugh
BMC Genomics 2009, 10:207 (1May2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Identifying genes related to choriogenesis in insect panoistic ovaries by Suppression Subtractive Hybridization
Paula Irles, Xavier Belles, M. Dolors Piulachs
BMC Genomics 2009, 10:206 (30April2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Transcriptomic analysis of the entomopathogenic nematode, Heterorhabditis bacteriophora TTO1
Xiaodong Bai, Byron J Adams, Todd A Ciche, Sandra Clifton, Randy Gaugler, Saskia A Hogenhout, John Spieth, Paul W Sternberg, Richard K Wilson, Parwinder S Grewal
BMC Genomics 2009, 10:205 (30April2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
In silico miRNA prediction in metazoan genomes: balancing between sensitivity and specificity
Ate van der Burgt, Mark WJE Fiers, Jan-Peter Nap, Roeland CHJ van Ham
BMC Genomics 2009, 10:204 (30April2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery
Matthew C Hale, Cory R McCormick, James R Jackson, J Andrew DeWoody
BMC Genomics 2009, 10:203 (29April2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

Research article
Distinct patterns of gene and protein expression elicited by organophosphorus pesticides in Caenorhabditis elegans
John A Lewis, Maria Szilagyi, Elizabeth Gehman, William E Dennis, David A Jackson
BMC Genomics 2009, 10:202 (29April2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]

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