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Welcome to the National Cancer Institute's Center for Bioinformatics (NCICB) Open Source Project Site.

This web site, enabled by GForge, is the primary site for collaborative project development for the NCI Center for Bioinformatics (NCICB) and for the NCI's Cancer Biomedical Informatics Grid™ (caBIG™).
  • The NCICB plays a lead role in bioinformatics and information technology by building many types of tools and resources that enable information to be shared along the continuum from the scientific bench to the clinical bedside and back.
  • caBIG™ is the cornerstone of NCI's biomedical informatics efforts to work together, leveraging valuable resources to transform cancer research into a more collaborative, efficient, and effective endeavor.
  • NCI's collaborative development is based on standard software practices stemming from the Rational Unified Process (RUP) and incorporating Object Management Group's (OMG) Model Driven Architecture (MDA). More information about NCI's software development methodology, policies and procedures can be found on the Software Configuration Management (SCM) Initiative project page.

Getting Started:

Note: Access to all project pages is open, but some of the project sites' features require an account. From all GForge tabs, you can apply for a GForge account: click the New Account link in the upper right corner; or, if you have an account, proceed directly to login: Click Login in the upper right-hand corner.
  • Home Page - This tab is where you land! From this page, you can navigate to any displayed GForge link, to external hypertext links, or to any other visible GForge tabs.
  • My Page - This tab serves as your login page once you have a GForge account and facilitates navigation to projects you have joined.
  • Project Tree - This tab includes links to all NCICB and caBIG project pages where you will find additional information. Once you have a GForge account, you can navigate to any visible project in GForge and request to join that project. The project pages provide tools to help project teams collaborate through access to meeting notes, draft and release documentation, bug and feature tracking, release plans, design documents, news, forums, CVS, and product Wikis.
Related Links: NCICB Open Development

Site shortcuts: NCICB Product Monthly Reports ~  caBIG Projects ~  NCICB Projects ~  NCI-NHGRI

Help with GForge: GForge Help Project ~  GForge Quick Start and User Guide

This site is being maintained by NCICB. Contact NCICB Application Support

Latest News
Subversion: New Repository Default
    Sarah Elkins - 2009-03-05 12:09   -   NCICB SCM Initiative
As of Friday, March 6, the default repository selected for new projects created in GForge will be Subversion. See the FAQ at http://gforge.nci.nih.gov/plugins/wiki/index.php?SubversionDefaultFrequentlyAskedQuestions&id=27&type=g for more details.
caBIG Vocabulary Knowledge Center
    Cheryl Nintemann - 2009-02-19 18:00   -   VKC Releases
Home Page: https://cabig-kc.nci.nih.gov/Vocab/KC
caBIO 4.2 is Released
    Juli Klemm - 2009-02-19 17:57   -   caBIO
On behalf of the entire caBIO team, I am pleased to announce the availability of caBIO 4.2. The key new feature in this release of caBIO is the availability of data from the Pathway Interaction Database (PID) (http://pid.nci.nih.gov/). Data from this resource have been added to the Pathway object and to a new supporting model in the gov.nih.nci.cabio.pathways package.
caArray 2.2.0 is Released
    Juli Klemm - 2009-02-13 18:03   -   Next Generation of caArray - 2.0
On behalf of the caArray team, I am pleased to announce the release of caArray 2.2.0. Over 80 features/issues have been addressed in this release.

Highlights of caArray 2.2.0
Development activity moved to LexEVS project
    Thomas Johnson - 2008-10-16 12:57   -   EVS API (deprecated - see LexEVS)
Due to continued integration of the LexBIG and EVS code bases, this GForge project is being deprecated. All development activity has been migrated to the LexEVS GForge project, located at the following URL: https://gforge.nci.nih.gov/projects/lexevs/.

 

Announcements
caBIG What's Big this Week
caCORE Infrastructure News!
 
NCICB GForge Statistics
Hosted Projects: 407
Registered Users: 1,807
 
NCICB Software Configuration Management Guidelines
Application Deployment Request (Annotated PDF)
Build Instructions Outline (Annotated PDF)
Build Script Guidelines (PDF)
Change Control Handbook (PDF)
Change Request
Database Deployment Request
Deployment Handbook (PDF)
Detailed Setup and Configuration Deployment Instructions (Annotated)
 
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