CGAP       the Cancer Genome Anatomy Project
    CGAP HOW TO GenesChromosomesTissuesSAGEPathwaysTools  

Genes

Gene Tools

SNP Tools

Transcriptome Analysis

CGAP Data

Purchase CGAP Reagents

Related Links

Quick Links:

NCI Logo


Gene Info

Gene Information For:Hs. SRM, Spermidine synthase
Sequence ID:NM_003132

Database Links

UniGeneEntrez GeneOMIMSNPViewerAssembliesSNP500CancerRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36-p22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 11037235 - 11042644

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2820975Full LengthBC000309spermidine synthase
5420683Full LengthBC033106spermidine synthase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003123  

Protein Infomation

RefSeq

mRNAProteinSwissProtEnzymePfam Motifs
NM_003132 NP_003123 P19623 EC 2.5.1.16 Spermine_synth

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
M34338 AAA36633 P19623 EC 2.5.1.16
BC000309 AAH00309 P19623 EC 2.5.1.16
BC033106 AAH33106 P19623 EC 2.5.1.16
EU831556 ACE86475    
EU831469 ACE87156    

Homologs (from HomoloGene)

Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SRM NP_003123 M.musculus Srm 20810 Gene Info NP_033298 95
R.norvegicus Srm 84596   NP_445916 95
M.grisea MGG_06197 2684363   XP_369267 62
N.crassa NCU06727.1 2708859   XP_327013 60
S.cerevisiae SPE3 856182   NP_015394 58
C.elegans Y46G5A.19 174914   NP_496723 58
A.gambiae AgaP_AGAP011126 1270799   XP_309520 58
S.pombe SPBC12C2.07c 2539919   NP_596015 57
D.melanogaster SpdS 41167   NP_731384 56
A.thaliana SPDS1 838993   NP_173794 53

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

Kegg Pathways
Pathway information courtesy of Kegg


If you have any questions, comments, or need information about CGAP, please contact the NCI CGAP Help Desk.