CGAP       the Cancer Genome Anatomy Project
Skip Main Navigation
    CGAP HOW TO GenesChromosomesTissuesSAGERNAiPathwaysTools  

Genes

Gene Tools

SNP Tools

Transcriptome Analysis

CGAP Data

Purchase CGAP Reagents

Related Links

Quick Links:

NCI Logo


Gene Info

Gene Information For:Hs. RP11-544M22.4, Homo sapiens, clone IMAGE:3634113, mRNA
Sequence ID:NM_016946
NM_001113205
NM_001113207
NM_001113206

Database Links

UniGeneEntrez GeneOMIMDTPSNPViewerAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21.2-q21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 159234515 - 159257549

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2990019Full LengthBC001533F11 receptor
3634113IncompleteBC038219F11 receptor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058642  

Protein Infomation

RefSeq

mRNAProteinSwissProtEnzymePfam Motifs
NM_001113205 NP_001106676      
NM_001113206 NP_001106677      
NM_001113207 NP_001106678 Q8NFU3 EC 2.8.1.1  
NM_016946 NP_058642 Q6FIB4
Q9Y624
  ig
V-set
NM_144503 NP_653086 Q6FIB4
Q9Y624
  ig
V-set

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF154005 AAD43794 Q9Y5B2  
AF172398 AAD48877 Q6FIB4
Q9Y624
 
AF207907 AAF22829 Q6FIB4
Q9Y624
 
BC001533 AAH01533 Q6FIB4
Q9Y624
 
BC001699 AAH01699 Q8NFU3 EC 2.8.1.1
AY358896 AAQ89255 Q6FIB4
Q9Y624
 
BT020103 AAV38906 Q6FIB4
Q9Y624
 
DQ892228 ABM83154    
DQ895428 ABM86354    
EU831732 ACE86566    
EU831648 ACE87248    
AK075152 BAC11436 Q6FIB4
Q9Y624
 
AK299487 BAH13047 B7Z5W1  
AK304412 BAH14177 B7Z941  
AL136649 CAB66584 Q6FIB4
Q9Y624
 
CR533512 CAG38543 Q6FIB4
Q9Y624
 
XM_001722251 XP_001722303    
XM_001725725 XP_001725777    
XM_001725726 XP_001725778    

Homologs (from HomoloGene)

Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens F11R NP_058642 R.norvegicus F11r 116479   NP_446248 72
M.musculus F11r 16456 Gene Info NP_766235 69

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

NCI-Nature Pathway Interaction Database

Kegg Pathways
Pathway information courtesy of Kegg

Download Plugin: Download Plugin Adobe SVG Viewer