CGAP       the Cancer Genome Anatomy Project
    CGAP HOW TO GenesChromosomesTissuesSAGEPathwaysTools  

Genes

Gene Tools

SNP Tools

Transcriptome Analysis

CGAP Data

Purchase CGAP Reagents

Related Links

Quick Links:

NCI Logo


Gene Info

Gene Information For:Hs. CST3, Cystatin C
Sequence ID:NM_000099

Database Links

UniGeneEntrez GeneOMIMSNPViewerAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20p11.21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 23562552 - 23566592

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4153023Full LengthBC013083cystatin C
5248305Full LengthBC110305cystatin C

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000090  

Protein Infomation

RefSeq

mRNAProteinSwissProtPfam Motifs
NM_000099 NP_000090 P01034 Cystatin

Related Sequences

 
mRNAGenPeptSwissProt
BC013083 AAH13083 P01034
BC110305 AAI10306 P01034
BT006839 AAP35485 P01034
DQ891439 ABM82365  
EU176584 ABW03385  
AK312213 BAG35146 B2R5J9
X05607 CAA29096 P01034
CR541988 CAG46785 P01034
CR542018 CAG46815 P01034

Homologs (from HomoloGene)

Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CST3 NP_000090 R.norvegicus Cst3 25307   NP_036969 74
M.musculus Cst3 13010 Gene Info NP_034106 72

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)


If you have any questions, comments, or need information about CGAP, please contact the NCI CGAP Help Desk.