CGAP       the Cancer Genome Anatomy Project
    CGAP HOW TO GenesChromosomesTissuesSAGEPathwaysTools  

Genes

Gene Tools

SNP Tools

Transcriptome Analysis

CGAP Data

Purchase CGAP Reagents

Related Links

Quick Links:

NCI Logo


Gene Info

Gene Information For:Hs. RPS20, Ribosomal protein S20
Sequence ID:NM_001023

Database Links

UniGeneEntrez GeneCGWBOMIMDTPSNPViewerAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 57148168 - 57149619

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3029762Full LengthBC007507ribosomal protein S20
30386230Full LengthBC087850ribosomal protein S20

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001014  

Protein Infomation

RefSeq

mRNAProteinSwissProtPfam Motifs
NM_001023 NP_001014 P60866 Ribosomal_S10

Related Sequences

 
mRNAGenPeptSwissProt
L06498 AAA60286 P60866
BC007507 AAH07507 P60866
BC087850 AAH87850 P60866
DQ893212 ABM84138  
DQ896541 ABM87540  
D28358 BAA05724  
AK311808 BAG34751 B2R4F4
AK301342 BAG62890 B4DW28

Homologs (from HomoloGene)

Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPS20 NP_001014 M.musculus Rps20 67427 Gene Info NP_080423 100
R.norvegicus Rps20 122772   NP_001007604 100
A.gambiae AgaP_AGAP010591 1275318   XP_314556 83
D.melanogaster RpS20 42464   NP_524421 82
S.pombe rps20 2539449   NP_588436 81
C.elegans rps-20 173309   NP_740944 80
M.grisea MGG_03372 2676891   XP_360829 78
A.thaliana AT3G47370 823891   NP_001030826 74
N.crassa NCU06892.1 2709078   XP_327178 72
S.cerevisiae RPS20 856371   NP_011848 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

Kegg Pathways
Pathway information courtesy of Kegg


If you have any questions, comments, or need information about CGAP, please contact the NCI CGAP Help Desk.